Clone BS04209 Report

Search the DGRC for BS04209

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:9
Vector:pDNR-Dual
Associated Gene/Transcriptslow-RA
Protein status:BS04209.pep: full length peptide match
Sequenced Size:1571

Clone Sequence Records

BS04209.5prime Sequence

614 bp (505 high quality bases) assembled on 2005-09-08

> BS04209.5prime
CAGTCGACATGCCAGAAACTGATTTACTCGAGCTCTTTCCTGCTGCTCTG
TTGCACAATCCTGCTGCTGGGAACAGTACAGAATGCCGGTTCCAATAGCA
CCAGCCCTCATCCTCACCAGAATCAAACTCATCGCGGACATGGTCACAGT
CATCGAACGCGTCATCAGGGCAACTATTTGGCCACCCATCAAAGGCAGCA
GCGCAGACTGCAGTCGCTGAATCAAGCCAAATCGGATGTGGAGCTGCTGC
CCGGGGTCACCATGCACGAGGTCACCAGATTACGACGGGTTCAGCCACAT
AATCCCTACAATAAAGTGCAGACACGACGCCTACACCAATCGCGAAACCC
CACCGAATGGGATTACAATACTTACAACATCATGACCAACACGTTCGGCC
CACCGCCACCGCCGATGCCGTTGTCACCGCGATATGGAAAGGGCGAGGAT
AATACCCAGGATGTTGAGTTTATCGGGGTGCGAGAACGTGGAAGGGGTTA
CTCATTCTTGCCATCGGTAACGGTCACCACTGCTCCGCCACCGAATCTGA
ATCAAAGATCCGCGAGTCCTGGTTCTCGCAGTAGCATCGGCACTATTCCA
CCACTGGTTCCGGC

BS04209.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7447-PA 1539 CG7447-RA 11..605 20..614 2900 99.4 Plus
CG7447-PB 1539 CG7447-RB 11..605 20..614 2900 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
slow-RB 2104 CG7447-RB 228..832 9..614 2960 99.3 Plus
slow-RA 2364 CG7447-RA 488..1092 9..614 2960 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4390491..4391095 9..614 2935 99.3 Plus
Blast to na_te.dros performed on 2015-02-13 09:57:16 has no hits.

BS04209.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:42 Download gff for BS04209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7447-PB 1..605 9..614 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:22 Download gff for BS04209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7447-PB 1..605 9..614 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:49:04 Download gff for BS04209.5prime
Subject Subject Range Query Range Percent Splice Strand
slow-RA 481..1092 1..614 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:10:59 Download gff for BS04209.5prime
Subject Subject Range Query Range Percent Splice Strand
slow-RA 481..1092 1..614 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:10:59 Download gff for BS04209.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4390484..4391095 1..614 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:49:04 Download gff for BS04209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4390484..4391095 1..614 98   Plus

BS04209.3prime Sequence

739 bp (573 high quality bases) assembled on 2005-09-08

> BS04209.3prime
ATGGTCTAGAAAGCTTTTACGGGCAATTGGCATTGCGGCCATTCCGGCAC
TTCAGCAGCAGGTTCAGCATACCCTCCAGCTTGTTCGTCCGGGACTCTGT
CTTGTAGAGATTCGTCTGCAGTCGACTGACATCCTGAGCCTGCTTTTCCA
GCGTGCTTAGCCGACTCTTGAGTGTGTCCACCACACTGTAGGTGGCCTGC
AGCGACTTTTGCAGCTCGTTCGTGTGCACTCGCTCATTGGCCAAGGACTT
TTCGATCTTCTGGAGTCGCGTGGCCACCTCCGCGTCCGTATCATCGATAT
CGTTCTCCAGATCCCGAGCCTCGAACGCATCGTCCGCATTCGTGGACACC
TTCTTGCAGCTCTGCTGATCCGACTGGAGAACGAATCCCTGACGGCAGCG
GCAGAAGTAAGATCCATGCGTATTGATGCACTGTTGATCGCATGGCTTCT
CCGTCTGGCACTCGTCCACATCCTGCTCGCAGAAACGTCCTGTGAAACCA
GTTGGACAGCTGCAGGTGCTAGGAGCCGTACAATTGCCACCGTTTTGGCA
GCGCGCGGAGCAAATAGGTTTCATGCGCGAATCCGACCTTGGGTTTTCCC
GGCTCCATCCCGTGCAGCAGTCGTAGGTCATCTGCTGGGCGGTCTTGTGA
TCGATGACGTCCCTGTAGGCCTGCTCGTGGACCACCTGCACCCTGGTGCA
CTTCTGGCCACTAAAGGTGGGCGGCTGGCAGGGCGTGGC

BS04209.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7447-PA 1539 CG7447-RA 817..1535 739..21 3545 99.7 Minus
CG7447-PB 1539 CG7447-RB 817..1535 739..21 3545 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
slow-RB 2104 CG7447-RB 1044..1767 739..16 3575 99.6 Minus
slow-RA 2364 CG7447-RA 1304..2027 739..16 3575 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4402225..4402644 567..148 2100 100 Minus
3L 28110227 3L 4401985..4402156 739..568 845 99.4 Minus
3L 28110227 3L 4402711..4402844 149..16 640 98.5 Minus
Blast to na_te.dros performed on 2015-02-10 17:14:24 has no hits.

BS04209.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:41 Download gff for BS04209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7447-PB 817..1539 17..739 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:21 Download gff for BS04209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7447-PB 817..1539 17..739 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:58:18 Download gff for BS04209.3prime
Subject Subject Range Query Range Percent Splice Strand
slow-RA 1304..2027 16..739 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:33 Download gff for BS04209.3prime
Subject Subject Range Query Range Percent Splice Strand
slow-RA 1304..2027 16..739 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:33 Download gff for BS04209.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4401985..4402156 568..739 99 -> Minus
3L 4402225..4402643 149..567 100 -> Minus
3L 4402712..4402846 14..148 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:58:18 Download gff for BS04209.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4401985..4402156 568..739 99 -> Minus
arm_3L 4402225..4402643 149..567 100 -> Minus
arm_3L 4402712..4402846 14..148 97 -> Minus

BS04209.complete Sequence

1571 bp assembled on 2010-01-09

GenBank Submission: KX797763

> BS04209.complete
GAAGTTATCAGTCGACATGCCAGAAATGATTTACTCGAGCTCTTTCCTGC
TGCTCTGTTGCACAATCCTGCTGCTGGGAACAGTACAGAATGCCGGTTCC
AATAGCACCAGCCCTCATCCTCACCAGAATCAAACTCATCGCGGACATGG
TCACAGTCATCGAACGCGTCATCAGGGCAACTATTTGGCCACCCATCAAA
GGCAGCAGCGCAGACTGCAGTCGCTGAATCAAGCCAAATCGGATGTGGAG
CTGCTGCCCGGGGTCACCATGCACGAGGTCACCAGATTACGACGGGTTCA
GCCACATAATCCCTACAATAAAGTGCAGACACGACGCCTACACCAATCGC
GAAACCCCACCGAATGGGATTACAATACTTACAACATCATGACCAACACG
TTCGGTCCACCGCCACCGCCGATGCCGTTGTCACCGCGATATGGAAAGGG
CGAGGATAATACCCAGGATGTTGAGTTTATCGGGGTGCGAGAACGTGGAA
GGGGTTACTCATTCGTGCCATCGGTAACGGTCACCACTGCTCCGCCACCG
AATCTGAATCGAAGATCCGCGAGTCCTGGTTCTCGCAGTAGCATCGGCAC
TATTCCACCACTGGTTCCGGCCAGAAGGGGCTATAGCTACACCACCACCA
CAAGTTCTCCTCCAGTGAACACCATCACCACTGACAATCCCTTCGAGACG
AACACCATTGGTCGAGGCTATCCCACAGATCCCAAGGAAATGGAAAGGCG
GCACATTTGCATGCAACAGCGAACGGTTACGATGCCCGTGAAGCGAACGG
AGGTCTACAGTCGTCCCACCTGGAAGCACGTGGCCACGCCCTGCCAGCCG
CCCACCTTTAGTGGCCAGAAGTGCACCAGGGTGCAGGTGGTCCACGAGCA
GGCCTACAGGGACGTCATCGATCACAAGACCGCCCAGCAGATGACCTACG
ACTGCTGCACGGGATGGAGCCGGGAAAACCCAAGGTCGGATTCGTGCATG
AAACCTATTTGCTCCGCGCGCTGCCAAAACGGTGGCAATTGTACGGCTCC
TAGCACCTGCAGCTGTCCAACTGGTTTCACAGGACGTTTCTGCGAGCAGG
ATGTGGACGAGTGCCAGACGGAGAAGCCATGCGATCAACAGTGCATCAAT
ACGCATGGATCTTACTTCTGCCGCTGCCGTCAGGGATTCGTTCTCCAGTC
GGATCAGCAGAGCTGCAAGAAGGTGTCCACGAATGCGGACGATGCGTTCG
AGGCTCGGGATCTGGAGAACGATATCGATGATACGGACGCGGAGGTGGCC
ACGCGACTCCAGAAGATCGAAAAGTCCTTGGCCAATGAGCGAGTGCACAC
GAACGAGCTGCAAAAGTCGCTGCAGGCCACCTACAGTGTGGTGGACACAC
TCAAGAGTCGGCTAAGCACGCTGGAAAAGCAGGCTCAGGATGTCAGTCGA
CTGCAGACGAATCTCTACAAGACAGAGTCCCGGACGAACAAGCTGGAGGG
TATGCTGAACCTGCTGCTGAAGTGCCGGAATGGCCCCAATGCCAATTGCC
CCTAAAAGCTTTCTAGACCAT

BS04209.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
slow-RB 1539 CG7447-PB 1..1539 17..1555 7695 100 Plus
slow-RA 1539 CG7447-PA 1..1539 17..1555 7695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
slow-RB 2104 CG7447-RB 228..1767 17..1556 7700 100 Plus
slow-RA 2364 CG7447-RA 488..2027 17..1556 7700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4390491..4391222 17..748 3660 100 Plus
3L 28110227 3L 4402225..4402644 1005..1424 2100 100 Plus
3L 28110227 3L 4401898..4402156 746..1004 1295 100 Plus
3L 28110227 3L 4402711..4402844 1423..1556 670 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:56:07 has no hits.

BS04209.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:57 Download gff for BS04209.complete
Subject Subject Range Query Range Percent Splice Strand
CG7447-RB 215..1751 17..1553 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:45 Download gff for BS04209.complete
Subject Subject Range Query Range Percent Splice Strand
slow-RA 488..2024 17..1553 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:21 Download gff for BS04209.complete
Subject Subject Range Query Range Percent Splice Strand
CG7447-RB 215..1751 17..1553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:03 Download gff for BS04209.complete
Subject Subject Range Query Range Percent Splice Strand
slow-RA 488..2024 17..1553 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:03 Download gff for BS04209.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4390491..4391221 17..747 100 -> Plus
3L 4401900..4402156 748..1004 100 -> Plus
3L 4402225..4402643 1005..1423 100 -> Plus
3L 4402712..4402841 1424..1553 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:45 Download gff for BS04209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4390491..4391221 17..747 100 -> Plus
arm_3L 4401900..4402156 748..1004 100 -> Plus
arm_3L 4402225..4402643 1005..1423 100 -> Plus
arm_3L 4402712..4402841 1424..1553 100   Plus

BS04209.pep Sequence

Translation from 16 to 1554

> BS04209.pep
MPEMIYSSSFLLLCCTILLLGTVQNAGSNSTSPHPHQNQTHRGHGHSHRT
RHQGNYLATHQRQQRRLQSLNQAKSDVELLPGVTMHEVTRLRRVQPHNPY
NKVQTRRLHQSRNPTEWDYNTYNIMTNTFGPPPPPMPLSPRYGKGEDNTQ
DVEFIGVRERGRGYSFVPSVTVTTAPPPNLNRRSASPGSRSSIGTIPPLV
PARRGYSYTTTTSSPPVNTITTDNPFETNTIGRGYPTDPKEMERRHICMQ
QRTVTMPVKRTEVYSRPTWKHVATPCQPPTFSGQKCTRVQVVHEQAYRDV
IDHKTAQQMTYDCCTGWSRENPRSDSCMKPICSARCQNGGNCTAPSTCSC
PTGFTGRFCEQDVDECQTEKPCDQQCINTHGSYFCRCRQGFVLQSDQQSC
KKVSTNADDAFEARDLENDIDDTDAEVATRLQKIEKSLANERVHTNELQK
SLQATYSVVDTLKSRLSTLEKQAQDVSRLQTNLYKTESRTNKLEGMLNLL
LKCRNGPNANCP*

BS04209.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
slow-PB 512 CG7447-PB 1..512 1..512 2784 100 Plus
slow-PA 512 CG7447-PA 1..512 1..512 2784 100 Plus
N-PB 2703 CG3936-PB 157..247 304..391 191 42.7 Plus
N-PA 2703 CG3936-PA 157..247 304..391 191 42.7 Plus
N-PB 2703 CG3936-PB 812..987 273..422 180 29 Plus
N-PA 2703 CG3936-PA 812..987 273..422 180 29 Plus
N-PB 2703 CG3936-PB 258..380 275..404 175 34.8 Plus
N-PA 2703 CG3936-PA 258..380 275..404 175 34.8 Plus