Clone Sequence Records
BS04209.5prime Sequence
614 bp (505 high quality bases) assembled on 2005-09-08
> BS04209.5prime
CAGTCGACATGCCAGAAACTGATTTACTCGAGCTCTTTCCTGCTGCTCTG
TTGCACAATCCTGCTGCTGGGAACAGTACAGAATGCCGGTTCCAATAGCA
CCAGCCCTCATCCTCACCAGAATCAAACTCATCGCGGACATGGTCACAGT
CATCGAACGCGTCATCAGGGCAACTATTTGGCCACCCATCAAAGGCAGCA
GCGCAGACTGCAGTCGCTGAATCAAGCCAAATCGGATGTGGAGCTGCTGC
CCGGGGTCACCATGCACGAGGTCACCAGATTACGACGGGTTCAGCCACAT
AATCCCTACAATAAAGTGCAGACACGACGCCTACACCAATCGCGAAACCC
CACCGAATGGGATTACAATACTTACAACATCATGACCAACACGTTCGGCC
CACCGCCACCGCCGATGCCGTTGTCACCGCGATATGGAAAGGGCGAGGAT
AATACCCAGGATGTTGAGTTTATCGGGGTGCGAGAACGTGGAAGGGGTTA
CTCATTCTTGCCATCGGTAACGGTCACCACTGCTCCGCCACCGAATCTGA
ATCAAAGATCCGCGAGTCCTGGTTCTCGCAGTAGCATCGGCACTATTCCA
CCACTGGTTCCGGC
BS04209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7447-PA | 1539 | CG7447-RA | 11..605 | 20..614 | 2900 | 99.4 | Plus |
CG7447-PB | 1539 | CG7447-RB | 11..605 | 20..614 | 2900 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slow-RB | 2104 | CG7447-RB | 228..832 | 9..614 | 2960 | 99.3 | Plus |
slow-RA | 2364 | CG7447-RA | 488..1092 | 9..614 | 2960 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:57:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4390491..4391095 | 9..614 | 2935 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:57:16 has no hits.
BS04209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:42 Download gff for
BS04209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-PB | 1..605 | 9..614 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:22 Download gff for
BS04209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-PB | 1..605 | 9..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:49:04 Download gff for
BS04209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 481..1092 | 1..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:10:59 Download gff for
BS04209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 481..1092 | 1..614 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:10:59 Download gff for
BS04209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4390484..4391095 | 1..614 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:49:04 Download gff for
BS04209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4390484..4391095 | 1..614 | 98 | | Plus |
BS04209.3prime Sequence
739 bp (573 high quality bases) assembled on 2005-09-08
> BS04209.3prime
ATGGTCTAGAAAGCTTTTACGGGCAATTGGCATTGCGGCCATTCCGGCAC
TTCAGCAGCAGGTTCAGCATACCCTCCAGCTTGTTCGTCCGGGACTCTGT
CTTGTAGAGATTCGTCTGCAGTCGACTGACATCCTGAGCCTGCTTTTCCA
GCGTGCTTAGCCGACTCTTGAGTGTGTCCACCACACTGTAGGTGGCCTGC
AGCGACTTTTGCAGCTCGTTCGTGTGCACTCGCTCATTGGCCAAGGACTT
TTCGATCTTCTGGAGTCGCGTGGCCACCTCCGCGTCCGTATCATCGATAT
CGTTCTCCAGATCCCGAGCCTCGAACGCATCGTCCGCATTCGTGGACACC
TTCTTGCAGCTCTGCTGATCCGACTGGAGAACGAATCCCTGACGGCAGCG
GCAGAAGTAAGATCCATGCGTATTGATGCACTGTTGATCGCATGGCTTCT
CCGTCTGGCACTCGTCCACATCCTGCTCGCAGAAACGTCCTGTGAAACCA
GTTGGACAGCTGCAGGTGCTAGGAGCCGTACAATTGCCACCGTTTTGGCA
GCGCGCGGAGCAAATAGGTTTCATGCGCGAATCCGACCTTGGGTTTTCCC
GGCTCCATCCCGTGCAGCAGTCGTAGGTCATCTGCTGGGCGGTCTTGTGA
TCGATGACGTCCCTGTAGGCCTGCTCGTGGACCACCTGCACCCTGGTGCA
CTTCTGGCCACTAAAGGTGGGCGGCTGGCAGGGCGTGGC
BS04209.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7447-PA | 1539 | CG7447-RA | 817..1535 | 739..21 | 3545 | 99.7 | Minus |
CG7447-PB | 1539 | CG7447-RB | 817..1535 | 739..21 | 3545 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:14:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slow-RB | 2104 | CG7447-RB | 1044..1767 | 739..16 | 3575 | 99.6 | Minus |
slow-RA | 2364 | CG7447-RA | 1304..2027 | 739..16 | 3575 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4402225..4402644 | 567..148 | 2100 | 100 | Minus |
3L | 28110227 | 3L | 4401985..4402156 | 739..568 | 845 | 99.4 | Minus |
3L | 28110227 | 3L | 4402711..4402844 | 149..16 | 640 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:14:24 has no hits.
BS04209.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:41 Download gff for
BS04209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-PB | 817..1539 | 17..739 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:21 Download gff for
BS04209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-PB | 817..1539 | 17..739 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:58:18 Download gff for
BS04209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 1304..2027 | 16..739 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:33 Download gff for
BS04209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 1304..2027 | 16..739 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:33 Download gff for
BS04209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4401985..4402156 | 568..739 | 99 | -> | Minus |
3L | 4402225..4402643 | 149..567 | 100 | -> | Minus |
3L | 4402712..4402846 | 14..148 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:58:18 Download gff for
BS04209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4401985..4402156 | 568..739 | 99 | -> | Minus |
arm_3L | 4402225..4402643 | 149..567 | 100 | -> | Minus |
arm_3L | 4402712..4402846 | 14..148 | 97 | -> | Minus |
BS04209.complete Sequence
1571 bp assembled on 2010-01-09
GenBank Submission: KX797763
> BS04209.complete
GAAGTTATCAGTCGACATGCCAGAAATGATTTACTCGAGCTCTTTCCTGC
TGCTCTGTTGCACAATCCTGCTGCTGGGAACAGTACAGAATGCCGGTTCC
AATAGCACCAGCCCTCATCCTCACCAGAATCAAACTCATCGCGGACATGG
TCACAGTCATCGAACGCGTCATCAGGGCAACTATTTGGCCACCCATCAAA
GGCAGCAGCGCAGACTGCAGTCGCTGAATCAAGCCAAATCGGATGTGGAG
CTGCTGCCCGGGGTCACCATGCACGAGGTCACCAGATTACGACGGGTTCA
GCCACATAATCCCTACAATAAAGTGCAGACACGACGCCTACACCAATCGC
GAAACCCCACCGAATGGGATTACAATACTTACAACATCATGACCAACACG
TTCGGTCCACCGCCACCGCCGATGCCGTTGTCACCGCGATATGGAAAGGG
CGAGGATAATACCCAGGATGTTGAGTTTATCGGGGTGCGAGAACGTGGAA
GGGGTTACTCATTCGTGCCATCGGTAACGGTCACCACTGCTCCGCCACCG
AATCTGAATCGAAGATCCGCGAGTCCTGGTTCTCGCAGTAGCATCGGCAC
TATTCCACCACTGGTTCCGGCCAGAAGGGGCTATAGCTACACCACCACCA
CAAGTTCTCCTCCAGTGAACACCATCACCACTGACAATCCCTTCGAGACG
AACACCATTGGTCGAGGCTATCCCACAGATCCCAAGGAAATGGAAAGGCG
GCACATTTGCATGCAACAGCGAACGGTTACGATGCCCGTGAAGCGAACGG
AGGTCTACAGTCGTCCCACCTGGAAGCACGTGGCCACGCCCTGCCAGCCG
CCCACCTTTAGTGGCCAGAAGTGCACCAGGGTGCAGGTGGTCCACGAGCA
GGCCTACAGGGACGTCATCGATCACAAGACCGCCCAGCAGATGACCTACG
ACTGCTGCACGGGATGGAGCCGGGAAAACCCAAGGTCGGATTCGTGCATG
AAACCTATTTGCTCCGCGCGCTGCCAAAACGGTGGCAATTGTACGGCTCC
TAGCACCTGCAGCTGTCCAACTGGTTTCACAGGACGTTTCTGCGAGCAGG
ATGTGGACGAGTGCCAGACGGAGAAGCCATGCGATCAACAGTGCATCAAT
ACGCATGGATCTTACTTCTGCCGCTGCCGTCAGGGATTCGTTCTCCAGTC
GGATCAGCAGAGCTGCAAGAAGGTGTCCACGAATGCGGACGATGCGTTCG
AGGCTCGGGATCTGGAGAACGATATCGATGATACGGACGCGGAGGTGGCC
ACGCGACTCCAGAAGATCGAAAAGTCCTTGGCCAATGAGCGAGTGCACAC
GAACGAGCTGCAAAAGTCGCTGCAGGCCACCTACAGTGTGGTGGACACAC
TCAAGAGTCGGCTAAGCACGCTGGAAAAGCAGGCTCAGGATGTCAGTCGA
CTGCAGACGAATCTCTACAAGACAGAGTCCCGGACGAACAAGCTGGAGGG
TATGCTGAACCTGCTGCTGAAGTGCCGGAATGGCCCCAATGCCAATTGCC
CCTAAAAGCTTTCTAGACCAT
BS04209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slow-RB | 1539 | CG7447-PB | 1..1539 | 17..1555 | 7695 | 100 | Plus |
slow-RA | 1539 | CG7447-PA | 1..1539 | 17..1555 | 7695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slow-RB | 2104 | CG7447-RB | 228..1767 | 17..1556 | 7700 | 100 | Plus |
slow-RA | 2364 | CG7447-RA | 488..2027 | 17..1556 | 7700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4390491..4391222 | 17..748 | 3660 | 100 | Plus |
3L | 28110227 | 3L | 4402225..4402644 | 1005..1424 | 2100 | 100 | Plus |
3L | 28110227 | 3L | 4401898..4402156 | 746..1004 | 1295 | 100 | Plus |
3L | 28110227 | 3L | 4402711..4402844 | 1423..1556 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:56:07 has no hits.
BS04209.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:57 Download gff for
BS04209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-RB | 215..1751 | 17..1553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:45 Download gff for
BS04209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 488..2024 | 17..1553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:21 Download gff for
BS04209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-RB | 215..1751 | 17..1553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:03 Download gff for
BS04209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 488..2024 | 17..1553 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:03 Download gff for
BS04209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4390491..4391221 | 17..747 | 100 | -> | Plus |
3L | 4401900..4402156 | 748..1004 | 100 | -> | Plus |
3L | 4402225..4402643 | 1005..1423 | 100 | -> | Plus |
3L | 4402712..4402841 | 1424..1553 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:45 Download gff for
BS04209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4390491..4391221 | 17..747 | 100 | -> | Plus |
arm_3L | 4401900..4402156 | 748..1004 | 100 | -> | Plus |
arm_3L | 4402225..4402643 | 1005..1423 | 100 | -> | Plus |
arm_3L | 4402712..4402841 | 1424..1553 | 100 | | Plus |
BS04209.pep Sequence
Translation from 16 to 1554
> BS04209.pep
MPEMIYSSSFLLLCCTILLLGTVQNAGSNSTSPHPHQNQTHRGHGHSHRT
RHQGNYLATHQRQQRRLQSLNQAKSDVELLPGVTMHEVTRLRRVQPHNPY
NKVQTRRLHQSRNPTEWDYNTYNIMTNTFGPPPPPMPLSPRYGKGEDNTQ
DVEFIGVRERGRGYSFVPSVTVTTAPPPNLNRRSASPGSRSSIGTIPPLV
PARRGYSYTTTTSSPPVNTITTDNPFETNTIGRGYPTDPKEMERRHICMQ
QRTVTMPVKRTEVYSRPTWKHVATPCQPPTFSGQKCTRVQVVHEQAYRDV
IDHKTAQQMTYDCCTGWSRENPRSDSCMKPICSARCQNGGNCTAPSTCSC
PTGFTGRFCEQDVDECQTEKPCDQQCINTHGSYFCRCRQGFVLQSDQQSC
KKVSTNADDAFEARDLENDIDDTDAEVATRLQKIEKSLANERVHTNELQK
SLQATYSVVDTLKSRLSTLEKQAQDVSRLQTNLYKTESRTNKLEGMLNLL
LKCRNGPNANCP*
BS04209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slow-PB | 512 | CG7447-PB | 1..512 | 1..512 | 2784 | 100 | Plus |
slow-PA | 512 | CG7447-PA | 1..512 | 1..512 | 2784 | 100 | Plus |
N-PB | 2703 | CG3936-PB | 157..247 | 304..391 | 191 | 42.7 | Plus |
N-PA | 2703 | CG3936-PA | 157..247 | 304..391 | 191 | 42.7 | Plus |
N-PB | 2703 | CG3936-PB | 812..987 | 273..422 | 180 | 29 | Plus |
N-PA | 2703 | CG3936-PA | 812..987 | 273..422 | 180 | 29 | Plus |
N-PB | 2703 | CG3936-PB | 258..380 | 275..404 | 175 | 34.8 | Plus |
N-PA | 2703 | CG3936-PA | 258..380 | 275..404 | 175 | 34.8 | Plus |