Clone BS04210 Report

Search the DGRC for BS04210

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptRhoGDI-RA
Protein status:BS04210.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04210.3prime Sequence

636 bp (635 high quality bases) assembled on 2005-12-01

> BS04210.3prime
ATGGTCTAGAAAGCTTTTAGGCCCAGTCCTTTTTGATCTCAAAGGTCCAG
TCCCACTCCAGGTGTATGTGCTTGTCGTCATCCGTGAAGACCGAACTGAC
CGAGTAGGTGCCGCGGGAGAATGTGCCTGAAGGTGCCTCCTCGGCGGGCG
TCAAATAGAACTGAATCTCCTTCTTCGGCGGATAGGAGCCAACCATATGC
TTCATCTTGTCAACATTAACACCCAAGCGAGAAGTCTTTTGAACATACTT
AAGGCCATGGACTATTTCACGCTGCACAATAAAATCAATGCGCACCTTGT
ACTGAACACCTTCTTTGATCACAAAAAGCTGCTTTTTCAGCTGACTAAGG
TCACCGGTAAGATCCAATTCCATGTCGTCGCGTCCTTCGACAACGAGGGC
CAGTTTCTTTACAATAACTTTTCGGGGATCATTGGGTTCAACAATAATTT
TCTCGGTCTGGGCGGCACCCAGGAGCGCCTCCTTGTAGCGCCGCAAGCTC
TCATCCTCCTGATCGGCGGCCATTATTTCCTCGATGGTCTTCTCCGGCGG
CGCCTGGTAGTTGGCATCGTGGACATCGTCGTCGTGGTGCTCGGGATGGT
GCTTCGTCTCTGTTTCGGCCATGTCGACTGATAACT

BS04210.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7823-PA 606 RhoGDI-RA 1..606 622..17 3030 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGDI-RB 1442 CG7823-RB 84..690 623..17 3035 100 Minus
RhoGDI-RA 1540 CG7823-RA 182..788 623..17 3035 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19931981..19932178 214..17 990 100 Minus
3L 28110227 3L 19930830..19931014 623..439 925 100 Minus
3L 28110227 3L 19931260..19931381 331..210 595 99.2 Minus
3L 28110227 3L 19931087..19931197 439..329 555 100 Minus
Blast to na_te.dros performed on 2015-02-03 13:24:00 has no hits.

BS04210.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:43 Download gff for BS04210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7823-PA 1..606 17..622 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:23 Download gff for BS04210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7823-PA 1..606 17..622 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:59:54 Download gff for BS04210.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 176..788 17..629 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:49:04 Download gff for BS04210.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 176..788 17..629 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:49:04 Download gff for BS04210.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19930824..19931014 439..629 98 -> Minus
3L 19931088..19931197 329..438 100 -> Minus
3L 19931263..19931377 214..328 100 -> Minus
3L 19931982..19932178 17..213 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:59:54 Download gff for BS04210.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19923924..19924114 439..629 98 -> Minus
arm_3L 19924188..19924297 329..438 100 -> Minus
arm_3L 19924363..19924477 214..328 100 -> Minus
arm_3L 19925082..19925278 17..213 100   Minus

BS04210.5prime Sequence

636 bp (635 high quality bases) assembled on 2005-11-29

> BS04210.5prime
GAAGTTATCAGTCGACATGGCCGAAACAGAGACGAAGCACCATCCCGAGC
ACCACGACGACGATGTCCACGATGCCAACTACCAGGCGCCGCCGGAGAAG
ACCATCGAGGAAATAATGGCCGCCGATCAGGAGGATGAGAGCTTGCGGCG
CTACAAGGAGGCGCTCCTGGGTGCCGCCCAGACCGAGAAAATTATTGTTG
AACCCAATGATCCCCGAAAAGTTATTGTAAAGAAACTGGCCCTCGTTGTC
GAAGGACGCGACGACATGGAATTGGATCTTACCGGTGACCTTAGTCAGCT
GAAAAAGCAGCTTTTTGTGATCAAAGAAGGTGTTCAGTACAAGGTGCGCA
TTGATTTTATTGTGCAGCGTGAAATAGTCCATGGCCTTAAGTATGTTCAA
AAGACTTCTCGCTTGGGTGTTAATGTTGACAAGATGAAGCATATGGTTGG
CTCCTATCCGCCGAAGAAGGAGATTCAGTTCTATTTGACGCCCGCCGAGG
AGGCACCTTCAGGCACATTCTCCCGCGGCACCTACTCGGTCAGTTCGGTC
TTCACGGATGACGACAAGCACATACACCTGGAGTGGGACTGGACCTTTGA
GATCAAAAAGGACTGGGCCTAAAAGCTTTCTAGACC

BS04210.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7823-PA 606 RhoGDI-RA 1..606 17..622 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGDI-RB 1442 CG7823-RB 84..690 16..622 3035 100 Plus
RhoGDI-RA 1540 CG7823-RA 182..788 16..622 3035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19931981..19932178 425..622 990 100 Plus
3L 28110227 3L 19930830..19931014 16..200 925 100 Plus
3L 28110227 3L 19931260..19931381 308..429 595 99.2 Plus
3L 28110227 3L 19931087..19931197 200..310 555 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:30:20 has no hits.

BS04210.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:44 Download gff for BS04210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7823-PA 1..606 17..622 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:25 Download gff for BS04210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7823-PA 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:16 Download gff for BS04210.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 176..788 10..622 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:35 Download gff for BS04210.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 176..788 10..622 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:35 Download gff for BS04210.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19930824..19931014 10..200 98 -> Plus
3L 19931088..19931197 201..310 100 -> Plus
3L 19931263..19931377 311..425 100 -> Plus
3L 19931982..19932178 426..622 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:16 Download gff for BS04210.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19923924..19924114 10..200 98 -> Plus
arm_3L 19924188..19924297 201..310 100 -> Plus
arm_3L 19924363..19924477 311..425 100 -> Plus
arm_3L 19925082..19925278 426..622 100   Plus

BS04210.complete Sequence

638 bp (638 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634878

> BS04210.complete
GAAGTTATCAGTCGACATGGCCGAAACAGAGACGAAGCACCATCCCGAGC
ACCACGACGACGATGTCCACGATGCCAACTACCAGGCGCCGCCGGAGAAG
ACCATCGAGGAAATAATGGCCGCCGATCAGGAGGATGAGAGCTTGCGGCG
CTACAAGGAGGCGCTCCTGGGTGCCGCCCAGACCGAGAAAATTATTGTTG
AACCCAATGATCCCCGAAAAGTTATTGTAAAGAAACTGGCCCTCGTTGTC
GAAGGACGCGACGACATGGAATTGGATCTTACCGGTGACCTTAGTCAGCT
GAAAAAGCAGCTTTTTGTGATCAAAGAAGGTGTTCAGTACAAGGTGCGCA
TTGATTTTATTGTGCAGCGTGAAATAGTCCATGGCCTTAAGTATGTTCAA
AAGACTTCTCGCTTGGGTGTTAATGTTGACAAGATGAAGCATATGGTTGG
CTCCTATCCGCCGAAGAAGGAGATTCAGTTCTATTTGACGCCCGCCGAGG
AGGCACCTTCAGGCACATTCTCCCGCGGCACCTACTCGGTCAGTTCGGTC
TTCACGGATGACGACAAGCACATACACCTGGAGTGGGACTGGACCTTTGA
GATCAAAAAGGACTGGGCCTAAAAGCTTTCTAGACCAT

BS04210.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGDI-RB 606 CG7823-PB 1..606 17..622 3030 100 Plus
RhoGDI-RA 606 CG7823-PA 1..606 17..622 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGDI-RB 1442 CG7823-RB 84..690 16..622 3035 100 Plus
RhoGDI-RA 1540 CG7823-RA 182..788 16..622 3035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19931981..19932178 425..622 990 100 Plus
3L 28110227 3L 19930830..19931014 16..200 925 100 Plus
3L 28110227 3L 19931260..19931381 308..429 595 99.2 Plus
3L 28110227 3L 19931087..19931197 200..310 555 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:46:07 has no hits.

BS04210.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:47 Download gff for BS04210.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:39 Download gff for BS04210.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 112..724 10..622 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:18 Download gff for BS04210.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 183..786 17..620 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:47 Download gff for BS04210.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 112..724 10..622 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:36 Download gff for BS04210.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 183..786 17..620 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:36 Download gff for BS04210.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19930831..19931014 17..200 100 -> Plus
3L 19931088..19931197 201..310 100 -> Plus
3L 19931263..19931377 311..425 100 -> Plus
3L 19931982..19932176 426..620 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:18 Download gff for BS04210.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19923931..19924114 17..200 100 -> Plus
arm_3L 19924188..19924297 201..310 100 -> Plus
arm_3L 19924363..19924477 311..425 100 -> Plus
arm_3L 19925082..19925276 426..620 100   Plus

BS04210.pep Sequence

Translation from 16 to 621

> BS04210.pep
MAETETKHHPEHHDDDVHDANYQAPPEKTIEEIMAADQEDESLRRYKEAL
LGAAQTEKIIVEPNDPRKVIVKKLALVVEGRDDMELDLTGDLSQLKKQLF
VIKEGVQYKVRIDFIVQREIVHGLKYVQKTSRLGVNVDKMKHMVGSYPPK
KEIQFYLTPAEEAPSGTFSRGTYSVSSVFTDDDKHIHLEWDWTFEIKKDW
A*

BS04210.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGDI-PB 201 CG7823-PB 1..201 1..201 1054 100 Plus
RhoGDI-PA 201 CG7823-PA 1..201 1..201 1054 100 Plus