Clone Sequence Records
BS04210.3prime Sequence
636 bp (635 high quality bases) assembled on 2005-12-01
> BS04210.3prime
ATGGTCTAGAAAGCTTTTAGGCCCAGTCCTTTTTGATCTCAAAGGTCCAG
TCCCACTCCAGGTGTATGTGCTTGTCGTCATCCGTGAAGACCGAACTGAC
CGAGTAGGTGCCGCGGGAGAATGTGCCTGAAGGTGCCTCCTCGGCGGGCG
TCAAATAGAACTGAATCTCCTTCTTCGGCGGATAGGAGCCAACCATATGC
TTCATCTTGTCAACATTAACACCCAAGCGAGAAGTCTTTTGAACATACTT
AAGGCCATGGACTATTTCACGCTGCACAATAAAATCAATGCGCACCTTGT
ACTGAACACCTTCTTTGATCACAAAAAGCTGCTTTTTCAGCTGACTAAGG
TCACCGGTAAGATCCAATTCCATGTCGTCGCGTCCTTCGACAACGAGGGC
CAGTTTCTTTACAATAACTTTTCGGGGATCATTGGGTTCAACAATAATTT
TCTCGGTCTGGGCGGCACCCAGGAGCGCCTCCTTGTAGCGCCGCAAGCTC
TCATCCTCCTGATCGGCGGCCATTATTTCCTCGATGGTCTTCTCCGGCGG
CGCCTGGTAGTTGGCATCGTGGACATCGTCGTCGTGGTGCTCGGGATGGT
GCTTCGTCTCTGTTTCGGCCATGTCGACTGATAACT
BS04210.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7823-PA | 606 | RhoGDI-RA | 1..606 | 622..17 | 3030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGDI-RB | 1442 | CG7823-RB | 84..690 | 623..17 | 3035 | 100 | Minus |
RhoGDI-RA | 1540 | CG7823-RA | 182..788 | 623..17 | 3035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19931981..19932178 | 214..17 | 990 | 100 | Minus |
3L | 28110227 | 3L | 19930830..19931014 | 623..439 | 925 | 100 | Minus |
3L | 28110227 | 3L | 19931260..19931381 | 331..210 | 595 | 99.2 | Minus |
3L | 28110227 | 3L | 19931087..19931197 | 439..329 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:24:00 has no hits.
BS04210.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:43 Download gff for
BS04210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7823-PA | 1..606 | 17..622 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:23 Download gff for
BS04210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7823-PA | 1..606 | 17..622 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:59:54 Download gff for
BS04210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 176..788 | 17..629 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:49:04 Download gff for
BS04210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 176..788 | 17..629 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:49:04 Download gff for
BS04210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19930824..19931014 | 439..629 | 98 | -> | Minus |
3L | 19931088..19931197 | 329..438 | 100 | -> | Minus |
3L | 19931263..19931377 | 214..328 | 100 | -> | Minus |
3L | 19931982..19932178 | 17..213 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:59:54 Download gff for
BS04210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19923924..19924114 | 439..629 | 98 | -> | Minus |
arm_3L | 19924188..19924297 | 329..438 | 100 | -> | Minus |
arm_3L | 19924363..19924477 | 214..328 | 100 | -> | Minus |
arm_3L | 19925082..19925278 | 17..213 | 100 | | Minus |
BS04210.5prime Sequence
636 bp (635 high quality bases) assembled on 2005-11-29
> BS04210.5prime
GAAGTTATCAGTCGACATGGCCGAAACAGAGACGAAGCACCATCCCGAGC
ACCACGACGACGATGTCCACGATGCCAACTACCAGGCGCCGCCGGAGAAG
ACCATCGAGGAAATAATGGCCGCCGATCAGGAGGATGAGAGCTTGCGGCG
CTACAAGGAGGCGCTCCTGGGTGCCGCCCAGACCGAGAAAATTATTGTTG
AACCCAATGATCCCCGAAAAGTTATTGTAAAGAAACTGGCCCTCGTTGTC
GAAGGACGCGACGACATGGAATTGGATCTTACCGGTGACCTTAGTCAGCT
GAAAAAGCAGCTTTTTGTGATCAAAGAAGGTGTTCAGTACAAGGTGCGCA
TTGATTTTATTGTGCAGCGTGAAATAGTCCATGGCCTTAAGTATGTTCAA
AAGACTTCTCGCTTGGGTGTTAATGTTGACAAGATGAAGCATATGGTTGG
CTCCTATCCGCCGAAGAAGGAGATTCAGTTCTATTTGACGCCCGCCGAGG
AGGCACCTTCAGGCACATTCTCCCGCGGCACCTACTCGGTCAGTTCGGTC
TTCACGGATGACGACAAGCACATACACCTGGAGTGGGACTGGACCTTTGA
GATCAAAAAGGACTGGGCCTAAAAGCTTTCTAGACC
BS04210.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7823-PA | 606 | RhoGDI-RA | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGDI-RB | 1442 | CG7823-RB | 84..690 | 16..622 | 3035 | 100 | Plus |
RhoGDI-RA | 1540 | CG7823-RA | 182..788 | 16..622 | 3035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19931981..19932178 | 425..622 | 990 | 100 | Plus |
3L | 28110227 | 3L | 19930830..19931014 | 16..200 | 925 | 100 | Plus |
3L | 28110227 | 3L | 19931260..19931381 | 308..429 | 595 | 99.2 | Plus |
3L | 28110227 | 3L | 19931087..19931197 | 200..310 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:30:20 has no hits.
BS04210.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:44 Download gff for
BS04210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7823-PA | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:25 Download gff for
BS04210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7823-PA | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:16 Download gff for
BS04210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 176..788 | 10..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:35 Download gff for
BS04210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 176..788 | 10..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:35 Download gff for
BS04210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19930824..19931014 | 10..200 | 98 | -> | Plus |
3L | 19931088..19931197 | 201..310 | 100 | -> | Plus |
3L | 19931263..19931377 | 311..425 | 100 | -> | Plus |
3L | 19931982..19932178 | 426..622 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:16 Download gff for
BS04210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19923924..19924114 | 10..200 | 98 | -> | Plus |
arm_3L | 19924188..19924297 | 201..310 | 100 | -> | Plus |
arm_3L | 19924363..19924477 | 311..425 | 100 | -> | Plus |
arm_3L | 19925082..19925278 | 426..622 | 100 | | Plus |
BS04210.complete Sequence
638 bp (638 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634878
> BS04210.complete
GAAGTTATCAGTCGACATGGCCGAAACAGAGACGAAGCACCATCCCGAGC
ACCACGACGACGATGTCCACGATGCCAACTACCAGGCGCCGCCGGAGAAG
ACCATCGAGGAAATAATGGCCGCCGATCAGGAGGATGAGAGCTTGCGGCG
CTACAAGGAGGCGCTCCTGGGTGCCGCCCAGACCGAGAAAATTATTGTTG
AACCCAATGATCCCCGAAAAGTTATTGTAAAGAAACTGGCCCTCGTTGTC
GAAGGACGCGACGACATGGAATTGGATCTTACCGGTGACCTTAGTCAGCT
GAAAAAGCAGCTTTTTGTGATCAAAGAAGGTGTTCAGTACAAGGTGCGCA
TTGATTTTATTGTGCAGCGTGAAATAGTCCATGGCCTTAAGTATGTTCAA
AAGACTTCTCGCTTGGGTGTTAATGTTGACAAGATGAAGCATATGGTTGG
CTCCTATCCGCCGAAGAAGGAGATTCAGTTCTATTTGACGCCCGCCGAGG
AGGCACCTTCAGGCACATTCTCCCGCGGCACCTACTCGGTCAGTTCGGTC
TTCACGGATGACGACAAGCACATACACCTGGAGTGGGACTGGACCTTTGA
GATCAAAAAGGACTGGGCCTAAAAGCTTTCTAGACCAT
BS04210.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGDI-RB | 606 | CG7823-PB | 1..606 | 17..622 | 3030 | 100 | Plus |
RhoGDI-RA | 606 | CG7823-PA | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGDI-RB | 1442 | CG7823-RB | 84..690 | 16..622 | 3035 | 100 | Plus |
RhoGDI-RA | 1540 | CG7823-RA | 182..788 | 16..622 | 3035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19931981..19932178 | 425..622 | 990 | 100 | Plus |
3L | 28110227 | 3L | 19930830..19931014 | 16..200 | 925 | 100 | Plus |
3L | 28110227 | 3L | 19931260..19931381 | 308..429 | 595 | 99.2 | Plus |
3L | 28110227 | 3L | 19931087..19931197 | 200..310 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:46:07 has no hits.
BS04210.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:47 Download gff for
BS04210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:39 Download gff for
BS04210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 112..724 | 10..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:18 Download gff for
BS04210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 183..786 | 17..620 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:47 Download gff for
BS04210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 112..724 | 10..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:36 Download gff for
BS04210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 183..786 | 17..620 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:36 Download gff for
BS04210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19930831..19931014 | 17..200 | 100 | -> | Plus |
3L | 19931088..19931197 | 201..310 | 100 | -> | Plus |
3L | 19931263..19931377 | 311..425 | 100 | -> | Plus |
3L | 19931982..19932176 | 426..620 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:18 Download gff for
BS04210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19923931..19924114 | 17..200 | 100 | -> | Plus |
arm_3L | 19924188..19924297 | 201..310 | 100 | -> | Plus |
arm_3L | 19924363..19924477 | 311..425 | 100 | -> | Plus |
arm_3L | 19925082..19925276 | 426..620 | 100 | | Plus |
BS04210.pep Sequence
Translation from 16 to 621
> BS04210.pep
MAETETKHHPEHHDDDVHDANYQAPPEKTIEEIMAADQEDESLRRYKEAL
LGAAQTEKIIVEPNDPRKVIVKKLALVVEGRDDMELDLTGDLSQLKKQLF
VIKEGVQYKVRIDFIVQREIVHGLKYVQKTSRLGVNVDKMKHMVGSYPPK
KEIQFYLTPAEEAPSGTFSRGTYSVSSVFTDDDKHIHLEWDWTFEIKKDW
A*
BS04210.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGDI-PB | 201 | CG7823-PB | 1..201 | 1..201 | 1054 | 100 | Plus |
RhoGDI-PA | 201 | CG7823-PA | 1..201 | 1..201 | 1054 | 100 | Plus |