Clone BS04213 Report

Search the DGRC for BS04213

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG8569-RA
Protein status:BS04213.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04213.3prime Sequence

873 bp (856 high quality bases) assembled on 2005-12-01

> BS04213.3prime
ATGGTCTAGAAAGCTTTTAATGAGTAACTTTGCAGGATGCTTGGTGGCGT
CTCTTATCACGTCGCTGGCATTCAACGCTGCAGTAGGACGCAGTAAAGCA
GCAGTTAAAAACGGCCTCATCCAGGCAATGGTAGCACCATTGCTTCCTTT
TCACTTCGGCCAGCTTCCTTTGCGTGGCCGAGAGCTCTCTTCGGCAATTT
AGCAGATCGTTATGCGCCTGCAGTATTTCGGCGGTTAGACTATCATATGC
TACGGAGTCAGGAATCCCACGAATGGGCACCGGCGATGAGGTATTCGAAG
TGGTGTTATTAAGCCGTCGATTCTTTGCAGCGCCGGGAGTGGCTGGAGTC
GGCGGGCGTCCTCGTTTGCCGGACGCACTCGTTTCCGTTGACTCCGTGCA
GTGGGATAGAGCCACCTTAATGAGATTCTCGGCAACGGTGGGATCTGCAT
GGAAGCCGAATAGCGAGGCGGAATAGTGGGACAACATCATGTGACACTGC
AGTTCTTTTATCGCAGCGCTCAGAGCTCGGGAGTTCCGTGGTTTGATATG
CGACTGAATGTCCGACTCGATGGGTGTAATATCACGTTCTGAGATGAGGG
CCCGGGAATGAGTGCCACCGAAGAAGCGGACGTCGTACTTGATGGGCTGA
CGCTTGGAGACGCTCATCACCTTTGCAGGCCACGGTGGTGAGCCCACCTG
CTTGGCAAATACCAACTCGTGCCGCTGAAGACATGGCTTGGCGAACCAGA
GATCCGACAGGCTGGCCTCGTTGGAATACCTATAGCAGTCGGGGCAACGA
CGGATTTCGCGAATGTCGTGCGTCACATCTCTCATCAGCCACTTGGTGGC
ATTGTACTCAACGCTCTTTTGCC

BS04213.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8569-PA 1827 CG8569-RA 971..1827 873..17 4285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8569-RA 2334 CG8569-RA 1038..1895 873..16 4290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12520529..12521185 672..16 3285 100 Minus
2R 25286936 2R 12520268..12520472 873..669 1025 100 Minus
Blast to na_te.dros performed 2015-02-06 15:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 1209..1263 10..64 122 69.1 Plus
gypsy2 6841 gypsy2 GYPSY2 6841bp 3719..3767 428..380 119 71.4 Minus

BS04213.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:46 Download gff for BS04213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8569-PA 971..1827 17..873 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:27 Download gff for BS04213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8569-PA 971..1827 17..873 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:11:36 Download gff for BS04213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 1038..1897 11..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:51:31 Download gff for BS04213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 1038..1897 11..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:51:31 Download gff for BS04213.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12520268..12520470 671..873 100 -> Minus
2R 12520531..12521187 11..670 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:11:36 Download gff for BS04213.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8407773..8407975 671..873 100 -> Minus
arm_2R 8408036..8408692 11..670 99   Minus

BS04213.5prime Sequence

835 bp (770 high quality bases) assembled on 2005-12-01

> BS04213.5prime
GAAGTTATCAGTCGACATGGCCAGCGATATTCCACCTTCAGCCATCCGTA
TTTGGATGGACAAGCTGAAAAAGGGCGTTGGGCAGCCGGCGACAGTCCTA
GAGCGTTCCCTGCTCAATTTAATGAGTGCAGAAGCAGCCAGTTTATCGGT
GAAAAATGCCACGGAGCGAGGCATACTGGTGGCCAGAGCAGGCGGCGGAC
GGTCCAAGCGTCTGGCCCTCGCCTTTTGTCAAAAAGTAAGCCGGCTGCCC
AGCTCACCAATTGATCCGTTCTGCTTCGAGTGCCATTTGCCCGGAGCCGT
TAAGAAATGCATATCCTGCCATCGCTCCTTCCACGAGAATTGCCAGCGAC
AGGACCCGGAGAAGCCCAATTATTCAGTGCCCTCGGACAAGGGCCAACCT
TACCAGTTTCCCGTCAACGAATTGGACAATCAGCCCCTGAATAACACTCA
GAACTTGGAGACTCCCCAAACGCCAACGCCCCTGCTCGATCATAATAGCA
ACATCAATCAGACTTTGCTAGCCACTACGGATTTCCTGAAGCACGAGAAC
ATCGAGTGGGACGACGACGTCTTCTTTGTGTGCGAACAAAAGGGCGCGCG
CCAGCGAAAGCTGCCCAGGATCAAGGACGAACTACAAAGCAGTTTGGATA
GCGATGAGGGAAGCGATCTGGAGCGCTGCACCCACTGCCGTTTGCTCGCC
CTGGCCGCTCTCCACAACCCACCGCAACTCGACAAGCAAGAGCTGGGCTG
CCTATTGAAGTACTCCTGGGACCAGCATCACTCCTGGATCTCCATGGATG
TGGCCAAGTACATGGCCCAGCATTGGAACGAACGC

BS04213.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8569-PA 1827 CG8569-RA 1..819 17..835 4070 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8569-RA 2334 CG8569-RA 68..886 17..835 4080 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12519410..12520116 129..835 3520 99.9 Plus
2R 25286936 2R 12519233..12519347 17..131 575 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:00:14 has no hits.

BS04213.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:47 Download gff for BS04213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8569-PA 1..819 17..835 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:29 Download gff for BS04213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8569-PA 1..819 17..835 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:44:01 Download gff for BS04213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 65..886 14..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:50 Download gff for BS04213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 65..886 14..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:50 Download gff for BS04213.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12519230..12519347 14..131 99 -> Plus
2R 12519413..12520116 132..835 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:44:01 Download gff for BS04213.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8406735..8406852 14..131 99 -> Plus
arm_2R 8406918..8407621 132..835 99   Plus

BS04213.complete Sequence

1859 bp assembled on 2008-01-02

GenBank Submission: FJ634879

> BS04213.complete
GAAGTTATCAGTCGACATGGCCAGCGATATTCCACCTTCAGCCATCCGTA
TTTGGATGGACAAGCTGAAAAAGGGCGTTGGGCAGCCGGCGACAGTCCTA
GAGCGTTCCCTGCTCAATTTAATGAGTGCAGAAGCAGCCAGTTTATCGGT
GAAAAATGCCACGGAGCGAGGCATACTGGTGGCCAGAGCAGGCGGCGGAC
GGTCCAAGCGTCTGGCCCTCGCCTTTTGTCAAAAAGTAAGCCGGCTGCCC
AGCTCACCAATTGATCCGTTCTGCTTCGAGTGCCATTTGCCCGGAGCCGT
TAAGAAATGCATATCCTGCCATCGCTCCTTCCACGAGAATTGCCAGCGAC
AGGACCCGGAGAAGCCCAATTATTCAGTGCCCTCGGACAAGGGCCAACCT
TACCAGTTTCCCGTCAACGAATTGGACAATCAGCCCCTGAATAACACTCA
GAACTTGGAGACTCCCCAAACGCCAACGCCCCTGCTCGATCATAATAGCA
ACATCAATCAGACTTTGCTAGCCACTACGGATTTCCTGAAGCACGAGAAC
ATCGAGTGGGACGACGACGTCTTCTTTGTGTGCGAACAAAAGGGCGCGCG
CCAGCGAAAGCTGCCCAGGATCAAGGACGAACTACAAAGCAGTTTGGATA
GCGATGAGGGAAGCGATCTGGAGCGCTGCACCCACTGCCGTTTGCTCGCC
CTGGCCGCTCTCCACAACCCACCGCAACTCGACAAGCAAGAGCTGGGCTG
CCTATTGAAGTACTCCTGGGACCAGCATCACTCCTGGATCTCCATGGATG
TGGCCAAGTACATGGCCAAGCATTGGAACGAACGCGACAAGGCGCTGGTT
AAGCGGCTACTCTTCAAGACAAAGATTTTGGGTCTGGGCGACATCGAGCG
CAACATAGCGGCGGCGAAGTATACGTACCTAACAGAATTCCTAATGGATC
TGCTCGATCTGCAGCACAACATGGCCGTGTTCTTTGGGCAAAAGAGCGTT
GAGTACAATGCCACCAAGTGGCTGATGAGAGATGTGACGCACGACATTCG
CGAAATCCGTCGTTGCCCCGACTGCTATAGGTATTCCAACGAGGCCAGCC
TGTCGGATCTCTGGTTCGCCAAGCCATGTCTTCAGCGGCACGAGTTGGTA
TTTGCCAAGCAGGTGGGCTCACCACCGTGGCCTGCAAAGGTGATGAGCGT
CTCCAAGCGTCAGCCCATCAAGTACGACGTCCGCTTCTTCGGTGGCACTC
ATTCCCGGGCCCTCATCTCAGAACGTGATATTACACCCATCGAGTCGGAC
ATTCAGTCGCATATCAAACCACGGAACTCCCGAGCTCTGAGCGCTGCGAT
AAAAGAACTGCAGTGTCACATGATGTTGTCCCACTATTCCGCCTCGCTAT
TCGGCTTCCATGCAGATCCCACCGTTGCCGAGAATCTCATTAAGGTGGCT
CTATCCCACTGCACGGAGTCAACGGAAACGAGTGCGTCCGGCAAACGAGG
ACGCCCGCCGACTCCAGCCACTCCCGGCGCTGCAAAGAATCGACGGCTTA
ATAACACCACTTCGAATACCTCATCGCCGGTGCCCATTCGTGGGATTCCT
GACTCCGTAGCATATGATAGTCTAACCGCCGAAATACTGCAGGCGCATAA
CGATCTGCTAAATTGCCGAAGAGAGCTCTCGGCCACGCAAAGGAAGCTGG
CCGAAGTGAAAAGGAAGCAATGGTGCTACCATTGCCTGGATGAGGCCGTT
TTTAACTGCTGCTTTACTGCGTCCTACTGCAGCGTTGAATGCCAGCGACG
TGATAAGAGACGCCACCAAGCATCCTGCAAAGTTACTCATTAAAAGCTTT
CTAGACCAT

BS04213.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8569-RA 1827 CG8569-PA 1..1827 17..1843 9135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8569-RA 2334 CG8569-RA 68..1895 17..1844 9140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12519410..12520472 129..1191 5315 100 Plus
2R 25286936 2R 12520529..12521185 1188..1844 3285 100 Plus
2R 25286936 2R 12519233..12519347 17..131 575 100 Plus
Blast to na_te.dros performed 2014-11-27 16:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 1209..1263 1850..1796 122 69.1 Minus
gypsy2 6841 gypsy2 GYPSY2 6841bp 3719..3767 1432..1480 119 71.4 Plus

BS04213.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:49 Download gff for BS04213.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 1..1827 17..1843 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:00 Download gff for BS04213.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 85..1909 17..1841 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:19 Download gff for BS04213.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 68..1892 17..1841 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:49 Download gff for BS04213.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 82..1914 14..1849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:12 Download gff for BS04213.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 68..1892 17..1841 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:12 Download gff for BS04213.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12519233..12519347 17..131 100 -> Plus
2R 12519413..12520470 132..1189 100 -> Plus
2R 12520531..12521182 1190..1841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:19 Download gff for BS04213.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8406738..8406852 17..131 100 -> Plus
arm_2R 8406918..8407975 132..1189 100 -> Plus
arm_2R 8408036..8408687 1190..1841 100   Plus

BS04213.pep Sequence

Translation from 16 to 1842

> BS04213.pep
MASDIPPSAIRIWMDKLKKGVGQPATVLERSLLNLMSAEAASLSVKNATE
RGILVARAGGGRSKRLALAFCQKVSRLPSSPIDPFCFECHLPGAVKKCIS
CHRSFHENCQRQDPEKPNYSVPSDKGQPYQFPVNELDNQPLNNTQNLETP
QTPTPLLDHNSNINQTLLATTDFLKHENIEWDDDVFFVCEQKGARQRKLP
RIKDELQSSLDSDEGSDLERCTHCRLLALAALHNPPQLDKQELGCLLKYS
WDQHHSWISMDVAKYMAKHWNERDKALVKRLLFKTKILGLGDIERNIAAA
KYTYLTEFLMDLLDLQHNMAVFFGQKSVEYNATKWLMRDVTHDIREIRRC
PDCYRYSNEASLSDLWFAKPCLQRHELVFAKQVGSPPWPAKVMSVSKRQP
IKYDVRFFGGTHSRALISERDITPIESDIQSHIKPRNSRALSAAIKELQC
HMMLSHYSASLFGFHADPTVAENLIKVALSHCTESTETSASGKRGRPPTP
ATPGAAKNRRLNNTTSNTSSPVPIRGIPDSVAYDSLTAEILQAHNDLLNC
RRELSATQRKLAEVKRKQWCYHCLDEAVFNCCFTASYCSVECQRRDKRRH
QASCKVTH*

BS04213.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8569-PA 608 CG8569-PA 1..608 1..608 3243 100 Plus
CG1815-PB 1121 CG1815-PB 459..618 302..468 192 31 Plus
CG1815-PC 1664 CG1815-PC 459..618 302..468 192 31 Plus