Clone Sequence Records
BS04213.3prime Sequence
873 bp (856 high quality bases) assembled on 2005-12-01
> BS04213.3prime
ATGGTCTAGAAAGCTTTTAATGAGTAACTTTGCAGGATGCTTGGTGGCGT
CTCTTATCACGTCGCTGGCATTCAACGCTGCAGTAGGACGCAGTAAAGCA
GCAGTTAAAAACGGCCTCATCCAGGCAATGGTAGCACCATTGCTTCCTTT
TCACTTCGGCCAGCTTCCTTTGCGTGGCCGAGAGCTCTCTTCGGCAATTT
AGCAGATCGTTATGCGCCTGCAGTATTTCGGCGGTTAGACTATCATATGC
TACGGAGTCAGGAATCCCACGAATGGGCACCGGCGATGAGGTATTCGAAG
TGGTGTTATTAAGCCGTCGATTCTTTGCAGCGCCGGGAGTGGCTGGAGTC
GGCGGGCGTCCTCGTTTGCCGGACGCACTCGTTTCCGTTGACTCCGTGCA
GTGGGATAGAGCCACCTTAATGAGATTCTCGGCAACGGTGGGATCTGCAT
GGAAGCCGAATAGCGAGGCGGAATAGTGGGACAACATCATGTGACACTGC
AGTTCTTTTATCGCAGCGCTCAGAGCTCGGGAGTTCCGTGGTTTGATATG
CGACTGAATGTCCGACTCGATGGGTGTAATATCACGTTCTGAGATGAGGG
CCCGGGAATGAGTGCCACCGAAGAAGCGGACGTCGTACTTGATGGGCTGA
CGCTTGGAGACGCTCATCACCTTTGCAGGCCACGGTGGTGAGCCCACCTG
CTTGGCAAATACCAACTCGTGCCGCTGAAGACATGGCTTGGCGAACCAGA
GATCCGACAGGCTGGCCTCGTTGGAATACCTATAGCAGTCGGGGCAACGA
CGGATTTCGCGAATGTCGTGCGTCACATCTCTCATCAGCCACTTGGTGGC
ATTGTACTCAACGCTCTTTTGCC
BS04213.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8569-PA | 1827 | CG8569-RA | 971..1827 | 873..17 | 4285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8569-RA | 2334 | CG8569-RA | 1038..1895 | 873..16 | 4290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:21:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12520529..12521185 | 672..16 | 3285 | 100 | Minus |
2R | 25286936 | 2R | 12520268..12520472 | 873..669 | 1025 | 100 | Minus |
Blast to na_te.dros performed 2015-02-06 15:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 1209..1263 | 10..64 | 122 | 69.1 | Plus |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 3719..3767 | 428..380 | 119 | 71.4 | Minus |
BS04213.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:46 Download gff for
BS04213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8569-PA | 971..1827 | 17..873 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:27 Download gff for
BS04213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8569-PA | 971..1827 | 17..873 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:11:36 Download gff for
BS04213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8569-RA | 1038..1897 | 11..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:51:31 Download gff for
BS04213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8569-RA | 1038..1897 | 11..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:51:31 Download gff for
BS04213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12520268..12520470 | 671..873 | 100 | -> | Minus |
2R | 12520531..12521187 | 11..670 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:11:36 Download gff for
BS04213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8407773..8407975 | 671..873 | 100 | -> | Minus |
arm_2R | 8408036..8408692 | 11..670 | 99 | | Minus |
BS04213.5prime Sequence
835 bp (770 high quality bases) assembled on 2005-12-01
> BS04213.5prime
GAAGTTATCAGTCGACATGGCCAGCGATATTCCACCTTCAGCCATCCGTA
TTTGGATGGACAAGCTGAAAAAGGGCGTTGGGCAGCCGGCGACAGTCCTA
GAGCGTTCCCTGCTCAATTTAATGAGTGCAGAAGCAGCCAGTTTATCGGT
GAAAAATGCCACGGAGCGAGGCATACTGGTGGCCAGAGCAGGCGGCGGAC
GGTCCAAGCGTCTGGCCCTCGCCTTTTGTCAAAAAGTAAGCCGGCTGCCC
AGCTCACCAATTGATCCGTTCTGCTTCGAGTGCCATTTGCCCGGAGCCGT
TAAGAAATGCATATCCTGCCATCGCTCCTTCCACGAGAATTGCCAGCGAC
AGGACCCGGAGAAGCCCAATTATTCAGTGCCCTCGGACAAGGGCCAACCT
TACCAGTTTCCCGTCAACGAATTGGACAATCAGCCCCTGAATAACACTCA
GAACTTGGAGACTCCCCAAACGCCAACGCCCCTGCTCGATCATAATAGCA
ACATCAATCAGACTTTGCTAGCCACTACGGATTTCCTGAAGCACGAGAAC
ATCGAGTGGGACGACGACGTCTTCTTTGTGTGCGAACAAAAGGGCGCGCG
CCAGCGAAAGCTGCCCAGGATCAAGGACGAACTACAAAGCAGTTTGGATA
GCGATGAGGGAAGCGATCTGGAGCGCTGCACCCACTGCCGTTTGCTCGCC
CTGGCCGCTCTCCACAACCCACCGCAACTCGACAAGCAAGAGCTGGGCTG
CCTATTGAAGTACTCCTGGGACCAGCATCACTCCTGGATCTCCATGGATG
TGGCCAAGTACATGGCCCAGCATTGGAACGAACGC
BS04213.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8569-PA | 1827 | CG8569-RA | 1..819 | 17..835 | 4070 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8569-RA | 2334 | CG8569-RA | 68..886 | 17..835 | 4080 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12519410..12520116 | 129..835 | 3520 | 99.9 | Plus |
2R | 25286936 | 2R | 12519233..12519347 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:00:14 has no hits.
BS04213.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:47 Download gff for
BS04213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8569-PA | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:29 Download gff for
BS04213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8569-PA | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:44:01 Download gff for
BS04213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8569-RA | 65..886 | 14..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:50 Download gff for
BS04213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8569-RA | 65..886 | 14..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:50 Download gff for
BS04213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12519230..12519347 | 14..131 | 99 | -> | Plus |
2R | 12519413..12520116 | 132..835 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:44:01 Download gff for
BS04213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8406735..8406852 | 14..131 | 99 | -> | Plus |
arm_2R | 8406918..8407621 | 132..835 | 99 | | Plus |
BS04213.complete Sequence
1859 bp assembled on 2008-01-02
GenBank Submission: FJ634879
> BS04213.complete
GAAGTTATCAGTCGACATGGCCAGCGATATTCCACCTTCAGCCATCCGTA
TTTGGATGGACAAGCTGAAAAAGGGCGTTGGGCAGCCGGCGACAGTCCTA
GAGCGTTCCCTGCTCAATTTAATGAGTGCAGAAGCAGCCAGTTTATCGGT
GAAAAATGCCACGGAGCGAGGCATACTGGTGGCCAGAGCAGGCGGCGGAC
GGTCCAAGCGTCTGGCCCTCGCCTTTTGTCAAAAAGTAAGCCGGCTGCCC
AGCTCACCAATTGATCCGTTCTGCTTCGAGTGCCATTTGCCCGGAGCCGT
TAAGAAATGCATATCCTGCCATCGCTCCTTCCACGAGAATTGCCAGCGAC
AGGACCCGGAGAAGCCCAATTATTCAGTGCCCTCGGACAAGGGCCAACCT
TACCAGTTTCCCGTCAACGAATTGGACAATCAGCCCCTGAATAACACTCA
GAACTTGGAGACTCCCCAAACGCCAACGCCCCTGCTCGATCATAATAGCA
ACATCAATCAGACTTTGCTAGCCACTACGGATTTCCTGAAGCACGAGAAC
ATCGAGTGGGACGACGACGTCTTCTTTGTGTGCGAACAAAAGGGCGCGCG
CCAGCGAAAGCTGCCCAGGATCAAGGACGAACTACAAAGCAGTTTGGATA
GCGATGAGGGAAGCGATCTGGAGCGCTGCACCCACTGCCGTTTGCTCGCC
CTGGCCGCTCTCCACAACCCACCGCAACTCGACAAGCAAGAGCTGGGCTG
CCTATTGAAGTACTCCTGGGACCAGCATCACTCCTGGATCTCCATGGATG
TGGCCAAGTACATGGCCAAGCATTGGAACGAACGCGACAAGGCGCTGGTT
AAGCGGCTACTCTTCAAGACAAAGATTTTGGGTCTGGGCGACATCGAGCG
CAACATAGCGGCGGCGAAGTATACGTACCTAACAGAATTCCTAATGGATC
TGCTCGATCTGCAGCACAACATGGCCGTGTTCTTTGGGCAAAAGAGCGTT
GAGTACAATGCCACCAAGTGGCTGATGAGAGATGTGACGCACGACATTCG
CGAAATCCGTCGTTGCCCCGACTGCTATAGGTATTCCAACGAGGCCAGCC
TGTCGGATCTCTGGTTCGCCAAGCCATGTCTTCAGCGGCACGAGTTGGTA
TTTGCCAAGCAGGTGGGCTCACCACCGTGGCCTGCAAAGGTGATGAGCGT
CTCCAAGCGTCAGCCCATCAAGTACGACGTCCGCTTCTTCGGTGGCACTC
ATTCCCGGGCCCTCATCTCAGAACGTGATATTACACCCATCGAGTCGGAC
ATTCAGTCGCATATCAAACCACGGAACTCCCGAGCTCTGAGCGCTGCGAT
AAAAGAACTGCAGTGTCACATGATGTTGTCCCACTATTCCGCCTCGCTAT
TCGGCTTCCATGCAGATCCCACCGTTGCCGAGAATCTCATTAAGGTGGCT
CTATCCCACTGCACGGAGTCAACGGAAACGAGTGCGTCCGGCAAACGAGG
ACGCCCGCCGACTCCAGCCACTCCCGGCGCTGCAAAGAATCGACGGCTTA
ATAACACCACTTCGAATACCTCATCGCCGGTGCCCATTCGTGGGATTCCT
GACTCCGTAGCATATGATAGTCTAACCGCCGAAATACTGCAGGCGCATAA
CGATCTGCTAAATTGCCGAAGAGAGCTCTCGGCCACGCAAAGGAAGCTGG
CCGAAGTGAAAAGGAAGCAATGGTGCTACCATTGCCTGGATGAGGCCGTT
TTTAACTGCTGCTTTACTGCGTCCTACTGCAGCGTTGAATGCCAGCGACG
TGATAAGAGACGCCACCAAGCATCCTGCAAAGTTACTCATTAAAAGCTTT
CTAGACCAT
BS04213.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8569-RA | 1827 | CG8569-PA | 1..1827 | 17..1843 | 9135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8569-RA | 2334 | CG8569-RA | 68..1895 | 17..1844 | 9140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12519410..12520472 | 129..1191 | 5315 | 100 | Plus |
2R | 25286936 | 2R | 12520529..12521185 | 1188..1844 | 3285 | 100 | Plus |
2R | 25286936 | 2R | 12519233..12519347 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:50:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 1209..1263 | 1850..1796 | 122 | 69.1 | Minus |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 3719..3767 | 1432..1480 | 119 | 71.4 | Plus |
BS04213.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:49 Download gff for
BS04213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8569-RA | 1..1827 | 17..1843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:00 Download gff for
BS04213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8569-RA | 85..1909 | 17..1841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:19 Download gff for
BS04213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8569-RA | 68..1892 | 17..1841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:49 Download gff for
BS04213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8569-RA | 82..1914 | 14..1849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:12 Download gff for
BS04213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8569-RA | 68..1892 | 17..1841 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:12 Download gff for
BS04213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12519233..12519347 | 17..131 | 100 | -> | Plus |
2R | 12519413..12520470 | 132..1189 | 100 | -> | Plus |
2R | 12520531..12521182 | 1190..1841 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:19 Download gff for
BS04213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8406738..8406852 | 17..131 | 100 | -> | Plus |
arm_2R | 8406918..8407975 | 132..1189 | 100 | -> | Plus |
arm_2R | 8408036..8408687 | 1190..1841 | 100 | | Plus |
BS04213.pep Sequence
Translation from 16 to 1842
> BS04213.pep
MASDIPPSAIRIWMDKLKKGVGQPATVLERSLLNLMSAEAASLSVKNATE
RGILVARAGGGRSKRLALAFCQKVSRLPSSPIDPFCFECHLPGAVKKCIS
CHRSFHENCQRQDPEKPNYSVPSDKGQPYQFPVNELDNQPLNNTQNLETP
QTPTPLLDHNSNINQTLLATTDFLKHENIEWDDDVFFVCEQKGARQRKLP
RIKDELQSSLDSDEGSDLERCTHCRLLALAALHNPPQLDKQELGCLLKYS
WDQHHSWISMDVAKYMAKHWNERDKALVKRLLFKTKILGLGDIERNIAAA
KYTYLTEFLMDLLDLQHNMAVFFGQKSVEYNATKWLMRDVTHDIREIRRC
PDCYRYSNEASLSDLWFAKPCLQRHELVFAKQVGSPPWPAKVMSVSKRQP
IKYDVRFFGGTHSRALISERDITPIESDIQSHIKPRNSRALSAAIKELQC
HMMLSHYSASLFGFHADPTVAENLIKVALSHCTESTETSASGKRGRPPTP
ATPGAAKNRRLNNTTSNTSSPVPIRGIPDSVAYDSLTAEILQAHNDLLNC
RRELSATQRKLAEVKRKQWCYHCLDEAVFNCCFTASYCSVECQRRDKRRH
QASCKVTH*
BS04213.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8569-PA | 608 | CG8569-PA | 1..608 | 1..608 | 3243 | 100 | Plus |
CG1815-PB | 1121 | CG1815-PB | 459..618 | 302..468 | 192 | 31 | Plus |
CG1815-PC | 1664 | CG1815-PC | 459..618 | 302..468 | 192 | 31 | Plus |