Clone Sequence Records
BS04216.3prime Sequence
903 bp (780 high quality bases) assembled on 2005-12-01
> BS04216.3prime
ATGGTCTAGAAAGCTTCTAATTGGTGAGGATTTCGGCGGCACGATTCTCC
ATCAGTTTCTCCATGTTCGTGATGGCGCCCATCCATGTGTCCAGAGTGCT
GGCCATGCCGACAATCTGGCTGCGGTTGAGGACGCGTGGTTGCACCCACG
ACATGTTAACCACTCCAGCCACTTGGTCAATCTCGCCGCGGACGAGATCC
AAAGCCAGAGCCTTCATGATAAGCAGTTCCACTTCCTTGGCGGGCAGTTT
GGTCTCTTGCGCGATGTCGGTAAAGGAGATGGCTCGCTCGATGGCTGAGC
GCTTGAAGGTCATCTCCATGAGGCAAAGGAGGGAGATCTTCTGGCGCAAC
TTGACCTCCTGGGCAGCCAAATCGGGAATCTTGGACCAGATTTTCTTCAT
GTCATTAAACTTGTTAATATCGCCCGTGTTGAAGGCTTTAAGAAGTTCCA
TGAGCCACTCATTTTCCGTGCCCTTAAGCGACTCAAGAATGGGATGAGCC
AGCAATTCGCCTATGTTGTAGACACCATCGCCCAAGAGAGCAGCCAGACC
CAAGAAGAATGCCTGCTGGGCCCATTGATCACGGGGGTACTCATCCATGG
AGCAGCCCAGAAACTGTAGGCCACATCGGTAGTAATCGCTGTGCTTGCCC
ACTCGCCGATAATACTGGGATGCCAGCATGTAGTATTTGCCGTGAACGGG
CGTCACATTACCCGCTTCCTCTAGGACATCACGCAGTTCCTCGATGATCT
TCTTGGTGGCATTCAGATCGTTCAGGTTGCTGAAGTACAGATTACCCTGC
ATCACCTGCAGATACCAAACGGCCTCGTCGCAGATCTTCACCTTGTCCTT
CATCTTCTCCAAGAACTCGATGGCCTCCCTTCTTGTCACCGATGTTGTCA
ACC
BS04216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10230-PB | 1149 | Rpn9-RB | 288..1149 | 878..17 | 4285 | 99.8 | Minus |
CG10230-PA | 1149 | Rpn9-RA | 288..1149 | 878..17 | 4285 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn9-RA | 1340 | CG10230-RA | 370..1255 | 903..17 | 4395 | 99.8 | Minus |
Rpn9-RB | 1578 | CG10230-RB | 480..1365 | 903..17 | 4395 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23732041..23732534 | 409..903 | 2410 | 99.6 | Plus |
3R | 32079331 | 3R | 23731588..23731981 | 17..410 | 1970 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:14:12 has no hits.
BS04216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:50 Download gff for
BS04216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-PA | 264..1149 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:32 Download gff for
BS04216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10230-PA | 264..1149 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:12 Download gff for
BS04216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RB | 480..1368 | 10..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:44:06 Download gff for
BS04216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RB | 480..1368 | 10..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:44:06 Download gff for
BS04216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23731584..23731981 | 10..410 | 99 | <- | Plus |
3R | 23732043..23732534 | 411..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:12 Download gff for
BS04216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19557306..19557703 | 10..410 | 99 | <- | Plus |
arm_3R | 19557765..19558256 | 411..903 | 99 | | Plus |
BS04216.5prime Sequence
907 bp (796 high quality bases) assembled on 2005-11-29
> BS04216.5prime
GAAGTTATCAGTCGACATGTCCAATCCTCAGCCTAATGTCACCGCCTATC
TGGCGACCCAGAAGAAGACCACCAACAAAGAACTCGCCGCCGAATGGACG
CTCATCGAGGAGCTCTACAATGAAAAACTCTGGAATGAGCTGACCATCAA
ACTGGTGACCTTTGTGCGCCACGAATCCTTGCAGGACGAAACTGCGCTGC
TGCAGCTCTACCAGAATTTCCTGTCCACCTTCGAGACCAAAATAAACCCC
TATGGCCTCATCCAGATTCTCGAGGTGGTGGTTGACAACATCGGTGACAA
GAAGGAGGCCATCGAGTTCTTGGAGAAGATGAAGGACAAGGTGAAGATCT
GCGACGAGGCCGTTTGGTATCTGCAGGTGATGCAGGGTAATCTGTACCTC
AGCAACCTGAACGATCTGAATGCCACCAAGAAGATCATCGAGGAACTGCG
TGATGTCCTAGAGGAAGCGGGTAATGTGACGCCCGTTCACGGCAAATACT
ACATGCTGGCATCCCAGTATTATCGGCGAGTGGGCAAGCACAGCGATTAC
TACCGATGTGGCCTACAGTTTCTGGGCTGCTCCATGGATGAGTACCCCCG
TGATCAATGGGCCCAGCAGGCATTCTTCTTGGGTCTGGCTGCTCTCTTGG
GCGATGGTGTCTACAACATAGGCGAATTGCTGGCTCATCCCATTCTTGAG
TCGCTTAAGGGCACGGAAAATGAGTGGCTCATGGAACTTCTTAAAGCCTT
CAACACGGGCGATATTAACAAGTTTAATGACATGAAGAAAATCTGGTCCA
AGATTCCCGATTTGGCTGCCCAGGAGGTCAAGTTGCGCCAGAAGATCTCC
CTCCTTTGCCTCATGGAGATGACCTTCAAGCGCTCAGCCATCGAGCGAGC
CATCTCC
BS04216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10230-PB | 1149 | Rpn9-RB | 1..891 | 17..907 | 4455 | 100 | Plus |
CG10230-PA | 1149 | Rpn9-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn9-RA | 1340 | CG10230-RA | 107..997 | 17..907 | 4455 | 100 | Plus |
Rpn9-RB | 1578 | CG10230-RB | 217..1107 | 17..907 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23732041..23732573 | 773..241 | 2665 | 100 | Minus |
3R | 32079331 | 3R | 23731846..23731981 | 907..772 | 680 | 100 | Minus |
3R | 32079331 | 3R | 23732627..23732740 | 240..127 | 570 | 100 | Minus |
3R | 32079331 | 3R | 23732796..23732905 | 126..17 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:47:54 has no hits.
BS04216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:51 Download gff for
BS04216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:33 Download gff for
BS04216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10230-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:10:53 Download gff for
BS04216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RB | 215..1107 | 13..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:55 Download gff for
BS04216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RB | 215..1107 | 13..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:55 Download gff for
BS04216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23731846..23731981 | 772..907 | 100 | <- | Minus |
3R | 23732043..23732573 | 241..771 | 100 | <- | Minus |
3R | 23732627..23732740 | 127..240 | 100 | <- | Minus |
3R | 23732796..23732913 | 9..126 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:10:53 Download gff for
BS04216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19557568..19557703 | 772..907 | 100 | <- | Minus |
arm_3R | 19557765..19558295 | 241..771 | 100 | <- | Minus |
arm_3R | 19558349..19558462 | 127..240 | 100 | <- | Minus |
arm_3R | 19558518..19558635 | 9..126 | 97 | | Minus |
BS04216.complete Sequence
1181 bp (1181 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634880
> BS04216.complete
GAAGTTATCAGTCGACATGTCCAATCCTCAGCCTAATGTCACCGCCTATC
TGGCGACCCAGAAGAAGACCACCAACAAAGAACTCGCCGCCGAATGGACG
CTCATCGAGGAGCTCTACAATGAAAAACTCTGGAATGAGCTGACCATCAA
ACTGGTGACCTTTGTGCGCCACGAATCCTTGCAGGACGAAACTGCGCTGC
TGCAGCTCTACCAGAATTTCCTGTCCACCTTCGAGACCAAAATAAACCCC
TATGGCCTCATCCAGATTCTCGAGGTGGTGGTTGACAACATCGGTGACAA
GAAGGAGGCCATCGAGTTCTTGGAGAAGATGAAGGACAAGGTGAAGATCT
GCGACGAGGCCGTTTGGTATCTGCAGGTGATGCAGGGTAATCTGTACCTC
AGCAACCTGAACGATCTGAATGCCACCAAGAAGATCATCGAGGAACTGCG
TGATGTCCTAGAGGAAGCGGGTAATGTGACGCCCGTTCACGGCAAATACT
ACATGCTGGCATCCCAGTATTATCGGCGAGTGGGCAAGCACAGCGATTAC
TACCGATGTGGCCTACAGTTTCTGGGCTGCTCCATGGATGAGTACCCCCG
TGATCAATGGGCCCAGCAGGCATTCTTCTTGGGTCTGGCTGCTCTCTTGG
GCGATGGTGTCTACAACATAGGCGAATTGCTGGCTCATCCCATTCTTGAG
TCGCTTAAGGGCACGGAAAATGAGTGGCTCATGGAACTTCTTAAAGCCTT
CAACACGGGCGATATTAACAAGTTTAATGACATGAAGAAAATCTGGTCCA
AGATTCCCGATTTGGCTGCCCAGGAGGTCAAGTTGCGCCAGAAGATCTCC
CTCCTTTGCCTCATGGAGATGACCTTCAAGCGCTCAGCCATCGAGCGAGC
CATCTCCTTTACCGACATCGCGCAAGAGACCAAACTGCCCGCCAAGGAAG
TGGAACTGCTTATCATGAAGGCTCTGGCTTTGGATCTCGTCCGCGGCGAG
ATTGACCAAGTGGCTGGAGTGGTTAACATGTCGTGGGTGCAACCACGCGT
CCTCAACCGCAGCCAGATTGTCGGCATGGCCAGCACTCTGGACACATGGA
TGGGCGCCATCACGAACATGGAGAAACTGATGGAGAATCGTGCCGCCGAA
ATCCTCACCAATTAGAAGCTTTCTAGACCAT
BS04216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn9-RA | 1149 | CG10230-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Rpn9-RB | 1149 | CG10230-PB | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn9-RA | 1340 | CG10230-RA | 107..1255 | 17..1165 | 5745 | 100 | Plus |
Rpn9-RB | 1578 | CG10230-RB | 217..1365 | 17..1165 | 5745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23732041..23732573 | 773..241 | 2665 | 100 | Minus |
3R | 32079331 | 3R | 23731588..23731981 | 1165..772 | 1970 | 100 | Minus |
3R | 32079331 | 3R | 23732627..23732740 | 240..127 | 570 | 100 | Minus |
3R | 32079331 | 3R | 23732796..23732905 | 126..17 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:50:02 has no hits.
BS04216.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:02 Download gff for
BS04216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RA | 1..1149 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:27 Download gff for
BS04216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RA | 84..1243 | 9..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:28 Download gff for
BS04216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RB | 217..1365 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:02 Download gff for
BS04216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RA | 84..1243 | 9..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:14 Download gff for
BS04216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RB | 217..1365 | 17..1165 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:14 Download gff for
BS04216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23731588..23731981 | 772..1165 | 100 | <- | Minus |
3R | 23732043..23732573 | 241..771 | 100 | <- | Minus |
3R | 23732627..23732740 | 127..240 | 100 | <- | Minus |
3R | 23732796..23732905 | 17..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:28 Download gff for
BS04216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19557310..19557703 | 772..1165 | 100 | <- | Minus |
arm_3R | 19557765..19558295 | 241..771 | 100 | <- | Minus |
arm_3R | 19558349..19558462 | 127..240 | 100 | <- | Minus |
arm_3R | 19558518..19558627 | 17..126 | 100 | | Minus |
BS04216.pep Sequence
Translation from 16 to 1164
> BS04216.pep
MSNPQPNVTAYLATQKKTTNKELAAEWTLIEELYNEKLWNELTIKLVTFV
RHESLQDETALLQLYQNFLSTFETKINPYGLIQILEVVVDNIGDKKEAIE
FLEKMKDKVKICDEAVWYLQVMQGNLYLSNLNDLNATKKIIEELRDVLEE
AGNVTPVHGKYYMLASQYYRRVGKHSDYYRCGLQFLGCSMDEYPRDQWAQ
QAFFLGLAALLGDGVYNIGELLAHPILESLKGTENEWLMELLKAFNTGDI
NKFNDMKKIWSKIPDLAAQEVKLRQKISLLCLMEMTFKRSAIERAISFTD
IAQETKLPAKEVELLIMKALALDLVRGEIDQVAGVVNMSWVQPRVLNRSQ
IVGMASTLDTWMGAITNMEKLMENRAAEILTN*
BS04216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn9-PA | 382 | CG10230-PA | 1..382 | 1..382 | 1960 | 100 | Plus |
Rpn9-PB | 382 | CG10230-PB | 1..382 | 1..382 | 1960 | 100 | Plus |