Clone BS04216 Report

Search the DGRC for BS04216

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptRpn9-RA
Protein status:BS04216.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04216.3prime Sequence

903 bp (780 high quality bases) assembled on 2005-12-01

> BS04216.3prime
ATGGTCTAGAAAGCTTCTAATTGGTGAGGATTTCGGCGGCACGATTCTCC
ATCAGTTTCTCCATGTTCGTGATGGCGCCCATCCATGTGTCCAGAGTGCT
GGCCATGCCGACAATCTGGCTGCGGTTGAGGACGCGTGGTTGCACCCACG
ACATGTTAACCACTCCAGCCACTTGGTCAATCTCGCCGCGGACGAGATCC
AAAGCCAGAGCCTTCATGATAAGCAGTTCCACTTCCTTGGCGGGCAGTTT
GGTCTCTTGCGCGATGTCGGTAAAGGAGATGGCTCGCTCGATGGCTGAGC
GCTTGAAGGTCATCTCCATGAGGCAAAGGAGGGAGATCTTCTGGCGCAAC
TTGACCTCCTGGGCAGCCAAATCGGGAATCTTGGACCAGATTTTCTTCAT
GTCATTAAACTTGTTAATATCGCCCGTGTTGAAGGCTTTAAGAAGTTCCA
TGAGCCACTCATTTTCCGTGCCCTTAAGCGACTCAAGAATGGGATGAGCC
AGCAATTCGCCTATGTTGTAGACACCATCGCCCAAGAGAGCAGCCAGACC
CAAGAAGAATGCCTGCTGGGCCCATTGATCACGGGGGTACTCATCCATGG
AGCAGCCCAGAAACTGTAGGCCACATCGGTAGTAATCGCTGTGCTTGCCC
ACTCGCCGATAATACTGGGATGCCAGCATGTAGTATTTGCCGTGAACGGG
CGTCACATTACCCGCTTCCTCTAGGACATCACGCAGTTCCTCGATGATCT
TCTTGGTGGCATTCAGATCGTTCAGGTTGCTGAAGTACAGATTACCCTGC
ATCACCTGCAGATACCAAACGGCCTCGTCGCAGATCTTCACCTTGTCCTT
CATCTTCTCCAAGAACTCGATGGCCTCCCTTCTTGTCACCGATGTTGTCA
ACC

BS04216.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10230-PB 1149 Rpn9-RB 288..1149 878..17 4285 99.8 Minus
CG10230-PA 1149 Rpn9-RA 288..1149 878..17 4285 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn9-RA 1340 CG10230-RA 370..1255 903..17 4395 99.8 Minus
Rpn9-RB 1578 CG10230-RB 480..1365 903..17 4395 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23732041..23732534 409..903 2410 99.6 Plus
3R 32079331 3R 23731588..23731981 17..410 1970 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:14:12 has no hits.

BS04216.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:50 Download gff for BS04216.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn9-PA 264..1149 17..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:32 Download gff for BS04216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10230-PA 264..1149 17..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:12 Download gff for BS04216.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RB 480..1368 10..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:44:06 Download gff for BS04216.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RB 480..1368 10..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:44:06 Download gff for BS04216.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23731584..23731981 10..410 99 <- Plus
3R 23732043..23732534 411..903 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:12 Download gff for BS04216.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19557306..19557703 10..410 99 <- Plus
arm_3R 19557765..19558256 411..903 99   Plus

BS04216.5prime Sequence

907 bp (796 high quality bases) assembled on 2005-11-29

> BS04216.5prime
GAAGTTATCAGTCGACATGTCCAATCCTCAGCCTAATGTCACCGCCTATC
TGGCGACCCAGAAGAAGACCACCAACAAAGAACTCGCCGCCGAATGGACG
CTCATCGAGGAGCTCTACAATGAAAAACTCTGGAATGAGCTGACCATCAA
ACTGGTGACCTTTGTGCGCCACGAATCCTTGCAGGACGAAACTGCGCTGC
TGCAGCTCTACCAGAATTTCCTGTCCACCTTCGAGACCAAAATAAACCCC
TATGGCCTCATCCAGATTCTCGAGGTGGTGGTTGACAACATCGGTGACAA
GAAGGAGGCCATCGAGTTCTTGGAGAAGATGAAGGACAAGGTGAAGATCT
GCGACGAGGCCGTTTGGTATCTGCAGGTGATGCAGGGTAATCTGTACCTC
AGCAACCTGAACGATCTGAATGCCACCAAGAAGATCATCGAGGAACTGCG
TGATGTCCTAGAGGAAGCGGGTAATGTGACGCCCGTTCACGGCAAATACT
ACATGCTGGCATCCCAGTATTATCGGCGAGTGGGCAAGCACAGCGATTAC
TACCGATGTGGCCTACAGTTTCTGGGCTGCTCCATGGATGAGTACCCCCG
TGATCAATGGGCCCAGCAGGCATTCTTCTTGGGTCTGGCTGCTCTCTTGG
GCGATGGTGTCTACAACATAGGCGAATTGCTGGCTCATCCCATTCTTGAG
TCGCTTAAGGGCACGGAAAATGAGTGGCTCATGGAACTTCTTAAAGCCTT
CAACACGGGCGATATTAACAAGTTTAATGACATGAAGAAAATCTGGTCCA
AGATTCCCGATTTGGCTGCCCAGGAGGTCAAGTTGCGCCAGAAGATCTCC
CTCCTTTGCCTCATGGAGATGACCTTCAAGCGCTCAGCCATCGAGCGAGC
CATCTCC

BS04216.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10230-PB 1149 Rpn9-RB 1..891 17..907 4455 100 Plus
CG10230-PA 1149 Rpn9-RA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn9-RA 1340 CG10230-RA 107..997 17..907 4455 100 Plus
Rpn9-RB 1578 CG10230-RB 217..1107 17..907 4455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23732041..23732573 773..241 2665 100 Minus
3R 32079331 3R 23731846..23731981 907..772 680 100 Minus
3R 32079331 3R 23732627..23732740 240..127 570 100 Minus
3R 32079331 3R 23732796..23732905 126..17 550 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:47:54 has no hits.

BS04216.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:51 Download gff for BS04216.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn9-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:33 Download gff for BS04216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10230-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:10:53 Download gff for BS04216.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RB 215..1107 13..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:55 Download gff for BS04216.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RB 215..1107 13..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:55 Download gff for BS04216.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23731846..23731981 772..907 100 <- Minus
3R 23732043..23732573 241..771 100 <- Minus
3R 23732627..23732740 127..240 100 <- Minus
3R 23732796..23732913 9..126 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:10:53 Download gff for BS04216.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19557568..19557703 772..907 100 <- Minus
arm_3R 19557765..19558295 241..771 100 <- Minus
arm_3R 19558349..19558462 127..240 100 <- Minus
arm_3R 19558518..19558635 9..126 97   Minus

BS04216.complete Sequence

1181 bp (1181 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634880

> BS04216.complete
GAAGTTATCAGTCGACATGTCCAATCCTCAGCCTAATGTCACCGCCTATC
TGGCGACCCAGAAGAAGACCACCAACAAAGAACTCGCCGCCGAATGGACG
CTCATCGAGGAGCTCTACAATGAAAAACTCTGGAATGAGCTGACCATCAA
ACTGGTGACCTTTGTGCGCCACGAATCCTTGCAGGACGAAACTGCGCTGC
TGCAGCTCTACCAGAATTTCCTGTCCACCTTCGAGACCAAAATAAACCCC
TATGGCCTCATCCAGATTCTCGAGGTGGTGGTTGACAACATCGGTGACAA
GAAGGAGGCCATCGAGTTCTTGGAGAAGATGAAGGACAAGGTGAAGATCT
GCGACGAGGCCGTTTGGTATCTGCAGGTGATGCAGGGTAATCTGTACCTC
AGCAACCTGAACGATCTGAATGCCACCAAGAAGATCATCGAGGAACTGCG
TGATGTCCTAGAGGAAGCGGGTAATGTGACGCCCGTTCACGGCAAATACT
ACATGCTGGCATCCCAGTATTATCGGCGAGTGGGCAAGCACAGCGATTAC
TACCGATGTGGCCTACAGTTTCTGGGCTGCTCCATGGATGAGTACCCCCG
TGATCAATGGGCCCAGCAGGCATTCTTCTTGGGTCTGGCTGCTCTCTTGG
GCGATGGTGTCTACAACATAGGCGAATTGCTGGCTCATCCCATTCTTGAG
TCGCTTAAGGGCACGGAAAATGAGTGGCTCATGGAACTTCTTAAAGCCTT
CAACACGGGCGATATTAACAAGTTTAATGACATGAAGAAAATCTGGTCCA
AGATTCCCGATTTGGCTGCCCAGGAGGTCAAGTTGCGCCAGAAGATCTCC
CTCCTTTGCCTCATGGAGATGACCTTCAAGCGCTCAGCCATCGAGCGAGC
CATCTCCTTTACCGACATCGCGCAAGAGACCAAACTGCCCGCCAAGGAAG
TGGAACTGCTTATCATGAAGGCTCTGGCTTTGGATCTCGTCCGCGGCGAG
ATTGACCAAGTGGCTGGAGTGGTTAACATGTCGTGGGTGCAACCACGCGT
CCTCAACCGCAGCCAGATTGTCGGCATGGCCAGCACTCTGGACACATGGA
TGGGCGCCATCACGAACATGGAGAAACTGATGGAGAATCGTGCCGCCGAA
ATCCTCACCAATTAGAAGCTTTCTAGACCAT

BS04216.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn9-RA 1149 CG10230-PA 1..1149 17..1165 5745 100 Plus
Rpn9-RB 1149 CG10230-PB 1..1149 17..1165 5745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn9-RA 1340 CG10230-RA 107..1255 17..1165 5745 100 Plus
Rpn9-RB 1578 CG10230-RB 217..1365 17..1165 5745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23732041..23732573 773..241 2665 100 Minus
3R 32079331 3R 23731588..23731981 1165..772 1970 100 Minus
3R 32079331 3R 23732627..23732740 240..127 570 100 Minus
3R 32079331 3R 23732796..23732905 126..17 550 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:50:02 has no hits.

BS04216.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:02 Download gff for BS04216.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RA 1..1149 17..1165 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:27 Download gff for BS04216.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RA 84..1243 9..1172 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:28 Download gff for BS04216.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RB 217..1365 17..1165 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:02 Download gff for BS04216.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RA 84..1243 9..1172 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:14 Download gff for BS04216.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RB 217..1365 17..1165 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:14 Download gff for BS04216.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23731588..23731981 772..1165 100 <- Minus
3R 23732043..23732573 241..771 100 <- Minus
3R 23732627..23732740 127..240 100 <- Minus
3R 23732796..23732905 17..126 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:28 Download gff for BS04216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19557310..19557703 772..1165 100 <- Minus
arm_3R 19557765..19558295 241..771 100 <- Minus
arm_3R 19558349..19558462 127..240 100 <- Minus
arm_3R 19558518..19558627 17..126 100   Minus

BS04216.pep Sequence

Translation from 16 to 1164

> BS04216.pep
MSNPQPNVTAYLATQKKTTNKELAAEWTLIEELYNEKLWNELTIKLVTFV
RHESLQDETALLQLYQNFLSTFETKINPYGLIQILEVVVDNIGDKKEAIE
FLEKMKDKVKICDEAVWYLQVMQGNLYLSNLNDLNATKKIIEELRDVLEE
AGNVTPVHGKYYMLASQYYRRVGKHSDYYRCGLQFLGCSMDEYPRDQWAQ
QAFFLGLAALLGDGVYNIGELLAHPILESLKGTENEWLMELLKAFNTGDI
NKFNDMKKIWSKIPDLAAQEVKLRQKISLLCLMEMTFKRSAIERAISFTD
IAQETKLPAKEVELLIMKALALDLVRGEIDQVAGVVNMSWVQPRVLNRSQ
IVGMASTLDTWMGAITNMEKLMENRAAEILTN*

BS04216.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn9-PA 382 CG10230-PA 1..382 1..382 1960 100 Plus
Rpn9-PB 382 CG10230-PB 1..382 1..382 1960 100 Plus