Clone Sequence Records
BS04218.5prime Sequence
202 bp (184 high quality bases) assembled on 2005-12-01
> BS04218.5prime
GAAGTTATCAGTCGACATGGATACCACCTATATTACAACGAATCCAGCTT
TAAGCCTGCGAGACTTTCTAGCCGACTATCAAAAGAAAATATCCGGTACT
GCAGACGAAGTGCCCTTCTTTCTCCAAAAAAACCCAGTACTTGTCGACGT
GTCTGAAAGCTGTTCCCTGGACTTGATCGAGTCCCCAGACGACAGCTCGA
TT
BS04218.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11508-PA | 1134 | CG11508-RA | 1..186 | 17..202 | 930 | 100 | Plus |
CG11508-PB | 1134 | CG11508-RB | 1..186 | 17..202 | 930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pbp49-RD | 1913 | CG42515-RD | 695..881 | 16..202 | 935 | 100 | Plus |
Pbp49-RB | 1887 | CG42515-RB | 612..798 | 16..202 | 935 | 100 | Plus |
Pbp49-RA | 1970 | CG42515-RA | 695..881 | 16..202 | 935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8130443..8130629 | 202..16 | 935 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:08:33 has no hits.
BS04218.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:55 Download gff for
BS04218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11508-PA | 1..186 | 17..202 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:36 Download gff for
BS04218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11508-PB | 1..186 | 17..202 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:26 Download gff for
BS04218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbp49-RA | 690..881 | 10..202 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:53 Download gff for
BS04218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbp49-RA | 690..881 | 10..202 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:53 Download gff for
BS04218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8130443..8130634 | 10..202 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:26 Download gff for
BS04218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4017948..4018139 | 10..202 | 98 | | Minus |
BS04218.3prime Sequence
242 bp (175 high quality bases) assembled on 2005-12-01
> BS04218.3prime
ATGGTCTAGAAAGCTTTCAGGAGGGGAGATTTTGCTGTTTAATGTCCTCC
TCTTCGCCCTCCAGCTCTACATGGTCATACATGCGATAGGCTTTGAACTG
GCCCAGCTTGACACCATCCACGTAAAAGAAGCTGAGAAAACATCTGCGGC
ACAGGTAGGAGGGATCGTGCAGCTGTCGCCGGGACTGGTTCACGATGAAG
CTATAGCTTGCGAATGCCGCACATATAGCAAGTCCTGCGATT
BS04218.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11508-PA | 1134 | CG11508-RA | 943..1134 | 208..17 | 960 | 100 | Minus |
CG11508-PB | 1134 | CG11508-RB | 943..1134 | 208..17 | 960 | 100 | Minus |
CG11508-PA | 1134 | CG11508-RA | 910..943 | 242..209 | 170 | 100 | Minus |
CG11508-PB | 1134 | CG11508-RB | 910..943 | 242..209 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pbp49-RD | 1913 | CG42515-RD | 1548..1773 | 242..16 | 1110 | 99.6 | Minus |
Pbp49-RB | 1887 | CG42515-RB | 1522..1747 | 242..16 | 1110 | 99.6 | Minus |
Pbp49-RA | 1970 | CG42515-RA | 1605..1830 | 242..16 | 1110 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 01:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8129494..8129719 | 16..242 | 1085 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 01:11:23 has no hits.
BS04218.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:54 Download gff for
BS04218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11508-PA | 910..1134 | 17..242 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:35 Download gff for
BS04218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11508-PB | 910..1134 | 17..242 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 15:11:10 Download gff for
BS04218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbp49-RA | 1605..1830 | 16..242 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:30:13 Download gff for
BS04218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbp49-RA | 1605..1830 | 16..242 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:30:13 Download gff for
BS04218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8129494..8129719 | 16..242 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 15:11:10 Download gff for
BS04218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4016999..4017224 | 16..242 | 99 | | Plus |
BS04218.complete Sequence
1166 bp assembled on 2010-05-12
GenBank Submission: KX794203
> BS04218.complete
GAAGTTATCAGTCGACATGGATACCACCTATATTACAACGAATCCAGCTT
TAAGCCTGCGAGACTTTCTAGCCGACTATCAAAAGAAAATATCCGGTACT
GCAGACGAAGTGCCCTTCTTTCTCCAAAAAAACCCAGTACTTGTCGACGT
GTCTGAAAGCTGTTCCCTGGACTTGATCGAGTCCCCAGACGACAGCTCGA
TTGCAGTCTTCCAGCCCGCCGCAGACAAATGCCGCCCAACCTTTTCTCCG
CCGCAGGAGAACCAGCATGTGCCCTCCACTTTTACTGCTCTAAGCCAGCA
CAAGGACAAGTCCCGTAAGTGTCCCTTTGGCCGCACCCAGTACAGCCACA
AACTGAATCCGACGCCGACAGACTCGCCTAACCTGCACATCGATGCTTGC
GGCGAACTGGAGCTAACCGTGCGTCTATATCGACCACCGCGGGCCTACCA
TCGCGGGTTTAAGGTGGAGATTCCCGTTTTCGCCGAGGAGTTCGTATGTC
TGGGCAGCAATTATCTGACCGAGCTGCGGGACAAGATCAGCTGCGTTTGC
AATGGAAAACGGTTTGTCGACATCAGCGACGATCCAGATGCACCGTTGCC
ATCCATTGACACAAATCCCGGTTACTTCTTCATCAACGACACATTCTACA
ACGACCAGCGCAATCCGGACAATCCCGACTATTCCAAGACCGTCTTGCAG
TGGGCTGCCAGAGCGAACGGAGTGAACGGAGAAACGCTTAAGGTGGAGAG
TATGGAGGGCAAAAGATTCATCGATCTCACTGTCAGCCCCGGATCACCGC
TACACTACCTGCACCACGGCAATTGCGAACACCTGTTTGTGATCTCCCAG
GTAGAGGTGCTAACGCCACTTAGTAAACGGCCAGATCGCAGCCTGTATCC
CTATCCTCACGCCTTCAGTACGTTTAATCGCAGGACTTGCTATATGTGCG
GCATTCGCAGCTATAGCTTCATCGTGAACCAGTCCCGGCGACAGCTGCAC
GATCCCTCCTACCTGTGCCGCAGATGTTTTCTCAGCTTCTTTTACGTGGA
TGGTGTCAAGCTGGGCCAGTTCAAAGCCTATCGCATGTATGACCATGTAG
AGCTGGAGGGCGAAGAGGAGGACATTAAACAGCAAAATCTCCCCTCCTGA
AAGCTTTCTAGACCAT
BS04218.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pbp49-RB | 1134 | CG42515-PB | 1..1134 | 17..1150 | 5670 | 100 | Plus |
Pbp49-RA | 1134 | CG42515-PA | 1..1134 | 17..1150 | 5670 | 100 | Plus |
Pbp49-RD | 1077 | CG42515-PD | 299..1077 | 372..1150 | 3895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pbp49-RB | 1887 | CG42515-RB | 612..1747 | 16..1151 | 5680 | 100 | Plus |
Pbp49-RA | 1970 | CG42515-RA | 695..1830 | 16..1151 | 5680 | 100 | Plus |
CG42516-RB | 1887 | CG42516-RB | 612..1747 | 16..1151 | 5680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8129494..8130629 | 1151..16 | 5680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:44:59 has no hits.
BS04218.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:40 Download gff for
BS04218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbp49-RC | 627..1759 | 17..1149 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:51 Download gff for
BS04218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42516-RB | 613..1745 | 17..1149 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:16 Download gff for
BS04218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42516-RB | 613..1745 | 17..1149 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:16 Download gff for
BS04218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8129496..8130628 | 17..1149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:51 Download gff for
BS04218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4017001..4018133 | 17..1149 | 100 | | Minus |
BS04218.pep Sequence
Translation from 16 to 1149
> BS04218.pep
MDTTYITTNPALSLRDFLADYQKKISGTADEVPFFLQKNPVLVDVSESCS
LDLIESPDDSSIAVFQPAADKCRPTFSPPQENQHVPSTFTALSQHKDKSR
KCPFGRTQYSHKLNPTPTDSPNLHIDACGELELTVRLYRPPRAYHRGFKV
EIPVFAEEFVCLGSNYLTELRDKISCVCNGKRFVDISDDPDAPLPSIDTN
PGYFFINDTFYNDQRNPDNPDYSKTVLQWAARANGVNGETLKVESMEGKR
FIDLTVSPGSPLHYLHHGNCEHLFVISQVEVLTPLSKRPDRSLYPYPHAF
STFNRRTCYMCGIRSYSFIVNQSRRQLHDPSYLCRRCFLSFFYVDGVKLG
QFKAYRMYDHVELEGEEEDIKQQNLPS*
BS04218.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pbp49-PB | 377 | CG42515-PB | 1..377 | 1..377 | 2038 | 100 | Plus |
Pbp49-PA | 377 | CG42515-PA | 1..377 | 1..377 | 2038 | 100 | Plus |
Pbp49-PD | 358 | CG42515-PD | 1..358 | 1..377 | 1891 | 94.7 | Plus |