Clone BS04218 Report

Search the DGRC for BS04218

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptPbp49-RA
Protein status:BS04218.pep: full length peptide match
Sequenced Size:1166

Clone Sequence Records

BS04218.5prime Sequence

202 bp (184 high quality bases) assembled on 2005-12-01

> BS04218.5prime
GAAGTTATCAGTCGACATGGATACCACCTATATTACAACGAATCCAGCTT
TAAGCCTGCGAGACTTTCTAGCCGACTATCAAAAGAAAATATCCGGTACT
GCAGACGAAGTGCCCTTCTTTCTCCAAAAAAACCCAGTACTTGTCGACGT
GTCTGAAAGCTGTTCCCTGGACTTGATCGAGTCCCCAGACGACAGCTCGA
TT

BS04218.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11508-PA 1134 CG11508-RA 1..186 17..202 930 100 Plus
CG11508-PB 1134 CG11508-RB 1..186 17..202 930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp49-RD 1913 CG42515-RD 695..881 16..202 935 100 Plus
Pbp49-RB 1887 CG42515-RB 612..798 16..202 935 100 Plus
Pbp49-RA 1970 CG42515-RA 695..881 16..202 935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8130443..8130629 202..16 935 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:08:33 has no hits.

BS04218.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:55 Download gff for BS04218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11508-PA 1..186 17..202 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:36 Download gff for BS04218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11508-PB 1..186 17..202 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:26 Download gff for BS04218.5prime
Subject Subject Range Query Range Percent Splice Strand
Pbp49-RA 690..881 10..202 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:53 Download gff for BS04218.5prime
Subject Subject Range Query Range Percent Splice Strand
Pbp49-RA 690..881 10..202 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:53 Download gff for BS04218.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8130443..8130634 10..202 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:26 Download gff for BS04218.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4017948..4018139 10..202 98   Minus

BS04218.3prime Sequence

242 bp (175 high quality bases) assembled on 2005-12-01

> BS04218.3prime
ATGGTCTAGAAAGCTTTCAGGAGGGGAGATTTTGCTGTTTAATGTCCTCC
TCTTCGCCCTCCAGCTCTACATGGTCATACATGCGATAGGCTTTGAACTG
GCCCAGCTTGACACCATCCACGTAAAAGAAGCTGAGAAAACATCTGCGGC
ACAGGTAGGAGGGATCGTGCAGCTGTCGCCGGGACTGGTTCACGATGAAG
CTATAGCTTGCGAATGCCGCACATATAGCAAGTCCTGCGATT

BS04218.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11508-PA 1134 CG11508-RA 943..1134 208..17 960 100 Minus
CG11508-PB 1134 CG11508-RB 943..1134 208..17 960 100 Minus
CG11508-PA 1134 CG11508-RA 910..943 242..209 170 100 Minus
CG11508-PB 1134 CG11508-RB 910..943 242..209 170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp49-RD 1913 CG42515-RD 1548..1773 242..16 1110 99.6 Minus
Pbp49-RB 1887 CG42515-RB 1522..1747 242..16 1110 99.6 Minus
Pbp49-RA 1970 CG42515-RA 1605..1830 242..16 1110 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 01:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8129494..8129719 16..242 1085 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 01:11:23 has no hits.

BS04218.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:54 Download gff for BS04218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11508-PA 910..1134 17..242 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:35 Download gff for BS04218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11508-PB 910..1134 17..242 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 15:11:10 Download gff for BS04218.3prime
Subject Subject Range Query Range Percent Splice Strand
Pbp49-RA 1605..1830 16..242 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:30:13 Download gff for BS04218.3prime
Subject Subject Range Query Range Percent Splice Strand
Pbp49-RA 1605..1830 16..242 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:30:13 Download gff for BS04218.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8129494..8129719 16..242 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 15:11:10 Download gff for BS04218.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4016999..4017224 16..242 99   Plus

BS04218.complete Sequence

1166 bp assembled on 2010-05-12

GenBank Submission: KX794203

> BS04218.complete
GAAGTTATCAGTCGACATGGATACCACCTATATTACAACGAATCCAGCTT
TAAGCCTGCGAGACTTTCTAGCCGACTATCAAAAGAAAATATCCGGTACT
GCAGACGAAGTGCCCTTCTTTCTCCAAAAAAACCCAGTACTTGTCGACGT
GTCTGAAAGCTGTTCCCTGGACTTGATCGAGTCCCCAGACGACAGCTCGA
TTGCAGTCTTCCAGCCCGCCGCAGACAAATGCCGCCCAACCTTTTCTCCG
CCGCAGGAGAACCAGCATGTGCCCTCCACTTTTACTGCTCTAAGCCAGCA
CAAGGACAAGTCCCGTAAGTGTCCCTTTGGCCGCACCCAGTACAGCCACA
AACTGAATCCGACGCCGACAGACTCGCCTAACCTGCACATCGATGCTTGC
GGCGAACTGGAGCTAACCGTGCGTCTATATCGACCACCGCGGGCCTACCA
TCGCGGGTTTAAGGTGGAGATTCCCGTTTTCGCCGAGGAGTTCGTATGTC
TGGGCAGCAATTATCTGACCGAGCTGCGGGACAAGATCAGCTGCGTTTGC
AATGGAAAACGGTTTGTCGACATCAGCGACGATCCAGATGCACCGTTGCC
ATCCATTGACACAAATCCCGGTTACTTCTTCATCAACGACACATTCTACA
ACGACCAGCGCAATCCGGACAATCCCGACTATTCCAAGACCGTCTTGCAG
TGGGCTGCCAGAGCGAACGGAGTGAACGGAGAAACGCTTAAGGTGGAGAG
TATGGAGGGCAAAAGATTCATCGATCTCACTGTCAGCCCCGGATCACCGC
TACACTACCTGCACCACGGCAATTGCGAACACCTGTTTGTGATCTCCCAG
GTAGAGGTGCTAACGCCACTTAGTAAACGGCCAGATCGCAGCCTGTATCC
CTATCCTCACGCCTTCAGTACGTTTAATCGCAGGACTTGCTATATGTGCG
GCATTCGCAGCTATAGCTTCATCGTGAACCAGTCCCGGCGACAGCTGCAC
GATCCCTCCTACCTGTGCCGCAGATGTTTTCTCAGCTTCTTTTACGTGGA
TGGTGTCAAGCTGGGCCAGTTCAAAGCCTATCGCATGTATGACCATGTAG
AGCTGGAGGGCGAAGAGGAGGACATTAAACAGCAAAATCTCCCCTCCTGA
AAGCTTTCTAGACCAT

BS04218.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp49-RB 1134 CG42515-PB 1..1134 17..1150 5670 100 Plus
Pbp49-RA 1134 CG42515-PA 1..1134 17..1150 5670 100 Plus
Pbp49-RD 1077 CG42515-PD 299..1077 372..1150 3895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp49-RB 1887 CG42515-RB 612..1747 16..1151 5680 100 Plus
Pbp49-RA 1970 CG42515-RA 695..1830 16..1151 5680 100 Plus
CG42516-RB 1887 CG42516-RB 612..1747 16..1151 5680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8129494..8130629 1151..16 5680 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:44:59 has no hits.

BS04218.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:40 Download gff for BS04218.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp49-RC 627..1759 17..1149 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:51 Download gff for BS04218.complete
Subject Subject Range Query Range Percent Splice Strand
CG42516-RB 613..1745 17..1149 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:16 Download gff for BS04218.complete
Subject Subject Range Query Range Percent Splice Strand
CG42516-RB 613..1745 17..1149 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:16 Download gff for BS04218.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8129496..8130628 17..1149 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:51 Download gff for BS04218.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4017001..4018133 17..1149 100   Minus

BS04218.pep Sequence

Translation from 16 to 1149

> BS04218.pep
MDTTYITTNPALSLRDFLADYQKKISGTADEVPFFLQKNPVLVDVSESCS
LDLIESPDDSSIAVFQPAADKCRPTFSPPQENQHVPSTFTALSQHKDKSR
KCPFGRTQYSHKLNPTPTDSPNLHIDACGELELTVRLYRPPRAYHRGFKV
EIPVFAEEFVCLGSNYLTELRDKISCVCNGKRFVDISDDPDAPLPSIDTN
PGYFFINDTFYNDQRNPDNPDYSKTVLQWAARANGVNGETLKVESMEGKR
FIDLTVSPGSPLHYLHHGNCEHLFVISQVEVLTPLSKRPDRSLYPYPHAF
STFNRRTCYMCGIRSYSFIVNQSRRQLHDPSYLCRRCFLSFFYVDGVKLG
QFKAYRMYDHVELEGEEEDIKQQNLPS*

BS04218.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp49-PB 377 CG42515-PB 1..377 1..377 2038 100 Plus
Pbp49-PA 377 CG42515-PA 1..377 1..377 2038 100 Plus
Pbp49-PD 358 CG42515-PD 1..358 1..377 1891 94.7 Plus