Clone Sequence Records
BS04221.3prime Sequence
789 bp (788 high quality bases) assembled on 2005-12-01
> BS04221.3prime
ATGGTCTAGAAAGCTTCTAATAATTCTTTCGTCCCGTTTGCTGCAGGTCC
AGTTTGTTCAGCAGATCGTCAAACTCGCTGAAGAGATGGGTTGTGCCATA
GCTGTCCACATAGGTCTTGCTGCCCCTGGAGGTTTTCTTGAAAGCGGGCA
GCACCGGACTGTGACCATGCAGAAGATTCACATTCTGATAAGACTGCGCC
TTGGCCGAACCGGCCAATGGATGCGACTGACTCTTGCCAACCGTGGGCGC
CAGTTCCAGAAAATTGGGCGCCTTCTTTGGCTGCAACTTGACCTGGTTGA
GCAGCGGATTGTGCAACTGAAGCTGCCGGTAGATGGGCAGGGCGTGCTTC
GGTGGCACCACCACGTGCTGGCGGCCCACCGCCTGCGGGTACAGGTACGT
GGTCTCCACCGTTGGCACCTGGCGGTAGTGGTATCGTCCCTCCCGCGGCG
TATACCTCCCATCCGAGCTCAGGGCGATGTGGAAGACGGTGCGCATGGGC
TTGCTGTAGTACTGATACACCTGCGGATTCCGCTGCTCGGGAACTATCCC
ATCTGGCACTGCGATGCCCTCCTTCTGCAGGCGATTCAAAAACAATCGAT
CCGTCTCAAAGGCGGTGTCGGGTATCTTACCACCCGCATGTGGCAATACT
TGTTCCCGATAGATTTGGCGTTTCTTGTGGTTGCGCTCAGCAAACTCCGA
GCCTTGGGCAATTATGAATGGGCCCACGCAAAGATATAGTAAACCGATCA
GCAAGATCACATATGGCGTAGACATGTCGACTGATAACT
BS04221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-PA | 759 | CG32037-RA | 1..759 | 775..17 | 3795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-RB | 1836 | CG32037-RB | 417..1175 | 775..17 | 3795 | 100 | Minus |
CG32037-RA | 1540 | CG32037-RA | 417..1175 | 775..17 | 3795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9490566..9490818 | 271..523 | 1265 | 100 | Plus |
3L | 28110227 | 3L | 9490323..9490508 | 86..271 | 930 | 100 | Plus |
3L | 28110227 | 3L | 9491472..9491630 | 519..677 | 795 | 100 | Plus |
3L | 28110227 | 3L | 9491698..9491799 | 674..775 | 510 | 100 | Plus |
3L | 28110227 | 3L | 9490163..9490231 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:01:10 has no hits.
BS04221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:56 Download gff for
BS04221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-PA | 1..759 | 17..775 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:38 Download gff for
BS04221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-PA | 1..759 | 17..775 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:19:49 Download gff for
BS04221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 408..1178 | 10..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:20 Download gff for
BS04221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 408..1178 | 10..783 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:20 Download gff for
BS04221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9490159..9490231 | 10..85 | 94 | <- | Plus |
3L | 9490323..9490507 | 86..270 | 100 | <- | Plus |
3L | 9490566..9490815 | 271..520 | 100 | <- | Plus |
3L | 9491474..9491626 | 521..673 | 100 | <- | Plus |
3L | 9491698..9491808 | 674..783 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:19:49 Download gff for
BS04221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9484798..9484908 | 674..783 | 97 | | Plus |
arm_3L | 9483259..9483331 | 10..85 | 94 | <- | Plus |
arm_3L | 9483423..9483607 | 86..270 | 100 | <- | Plus |
arm_3L | 9483666..9483915 | 271..520 | 100 | <- | Plus |
arm_3L | 9484574..9484726 | 521..673 | 100 | <- | Plus |
BS04221.5prime Sequence
789 bp (788 high quality bases) assembled on 2005-11-29
> BS04221.5prime
GAAGTTATCAGTCGACATGTCTACGCCATATGTGATCTTGCTGATCGGTT
TACTATATCTTTGCGTGGGCCCATTCATAATTGCCCAAGGCTCGGAGTTT
GCTGAGCGCAACCACAAGAAACGCCAAATCTATCGGGAACAAGTATTGCC
ACATGCGGGTGGTAAGATACCCGACACCGCCTTTGAGACGGATCGATTGT
TTTTGAATCGCCTGCAGAAGGAGGGCATCGCAGTGCCAGATGGGATAGTT
CCCGAGCAGCGGAATCCGCAGGTGTATCAGTACTACAGCAAGCCCATGCG
CACCGTCTTCCACATCGCCCTGAGCTCGGATGGGAGGTATACGCCGCGGG
AGGGACGATACCACTACCGCCAGGTGCCAACGGTGGAGACCACGTACCTG
TACCCGCAGGCGGTGGGCCGCCAGCACGTGGTGGTGCCACCGAAGCACGC
CCTGCCCATCTACCGGCAGCTTCAGTTGCACAATCCGCTGCTCAACCAGG
TCAAGTTGCAGCCAAAGAAGGCGCCCAATTTTCTGGAACTGGCGCCCACG
GTTGGCAAGAGTCAGTCGCATCCATTGGCCGGTTCGGCCAAGGCGCAGTC
TTATCAGAATGTGAATCTTCTGCATGGTCACAGTCCGGTGCTGCCCGCTT
TCAAGAAAACCTCCAGGGGCAGCAAGACCTATGTGGACAGCTATGGCACA
ACCCATCTCTTCAGCGAGTTTGACGATCTGCTGAACAAACTGGACCTGCA
GCAAACGGGACGAAAGAATTATTAGAAGCTTTCTAGACC
BS04221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-PA | 759 | CG32037-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-RB | 1836 | CG32037-RB | 417..1175 | 17..775 | 3795 | 100 | Plus |
CG32037-RA | 1540 | CG32037-RA | 417..1175 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9490566..9490818 | 521..269 | 1265 | 100 | Minus |
3L | 28110227 | 3L | 9490323..9490508 | 706..521 | 930 | 100 | Minus |
3L | 28110227 | 3L | 9491472..9491630 | 273..115 | 795 | 100 | Minus |
3L | 28110227 | 3L | 9491698..9491799 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 9490163..9490231 | 775..707 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:18:11 has no hits.
BS04221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:57 Download gff for
BS04221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-PA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:39 Download gff for
BS04221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-PA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:58:10 Download gff for
BS04221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 408..1178 | 9..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:39:30 Download gff for
BS04221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 408..1178 | 9..782 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:39:30 Download gff for
BS04221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9491698..9491808 | 9..118 | 97 | | Minus |
3L | 9490159..9490231 | 707..782 | 94 | <- | Minus |
3L | 9490323..9490507 | 522..706 | 100 | <- | Minus |
3L | 9490566..9490815 | 272..521 | 100 | <- | Minus |
3L | 9491474..9491626 | 119..271 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:58:10 Download gff for
BS04221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9483259..9483331 | 707..782 | 94 | <- | Minus |
arm_3L | 9483423..9483607 | 522..706 | 100 | <- | Minus |
arm_3L | 9483666..9483915 | 272..521 | 100 | <- | Minus |
arm_3L | 9484574..9484726 | 119..271 | 100 | <- | Minus |
arm_3L | 9484798..9484908 | 9..118 | 97 | | Minus |
BS04221.complete Sequence
791 bp (791 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634881
> BS04221.complete
GAAGTTATCAGTCGACATGTCTACGCCATATGTGATCTTGCTGATCGGTT
TACTATATCTTTGCGTGGGCCCATTCATAATTGCCCAAGGCTCGGAGTTT
GCTGAGCGCAACCACAAGAAACGCCAAATCTATCGGGAACAAGTATTGCC
ACATGCGGGTGGTAAGATACCCGACACCGCCTTTGAGACGGATCGATTGT
TTTTGAATCGCCTGCAGAAGGAGGGCATCGCAGTGCCAGATGGGATAGTT
CCCGAGCAGCGGAATCCGCAGGTGTATCAGTACTACAGCAAGCCCATGCG
CACCGTCTTCCACATCGCCCTGAGCTCGGATGGGAGGTATACGCCGCGGG
AGGGACGATACCACTACCGCCAGGTGCCAACGGTGGAGACCACGTACCTG
TACCCGCAGGCGGTGGGCCGCCAGCACGTGGTGGTGCCACCGAAGCACGC
CCTGCCCATCTACCGGCAGCTTCAGTTGCACAATCCGCTGCTCAACCAGG
TCAAGTTGCAGCCAAAGAAGGCGCCCAATTTTCTGGAACTGGCGCCCACG
GTTGGCAAGAGTCAGTCGCATCCATTGGCCGGTTCGGCCAAGGCGCAGTC
TTATCAGAATGTGAATCTTCTGCATGGTCACAGTCCGGTGCTGCCCGCTT
TCAAGAAAACCTCCAGGGGCAGCAAGACCTATGTGGACAGCTATGGCACA
ACCCATCTCTTCAGCGAGTTTGACGATCTGCTGAACAAACTGGACCTGCA
GCAAACGGGACGAAAGAATTATTAGAAGCTTTCTAGACCAT
BS04221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-RB | 759 | CG32037-PB | 1..759 | 17..775 | 3795 | 100 | Plus |
CG32037-RA | 759 | CG32037-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-RB | 1836 | CG32037-RB | 417..1175 | 17..775 | 3795 | 100 | Plus |
CG32037-RA | 1540 | CG32037-RA | 417..1175 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9490566..9490818 | 521..269 | 1265 | 100 | Minus |
3L | 28110227 | 3L | 9490323..9490508 | 706..521 | 930 | 100 | Minus |
3L | 28110227 | 3L | 9491472..9491630 | 273..115 | 795 | 100 | Minus |
3L | 28110227 | 3L | 9491698..9491799 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 9490163..9490231 | 775..707 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:44:39 has no hits.
BS04221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:03 Download gff for
BS04221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:29 Download gff for
BS04221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 387..1157 | 9..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:47 Download gff for
BS04221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 417..1175 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:03 Download gff for
BS04221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 387..1157 | 9..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:30 Download gff for
BS04221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 417..1175 | 17..775 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:30 Download gff for
BS04221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9490163..9490231 | 707..775 | 100 | <- | Minus |
3L | 9490323..9490507 | 522..706 | 100 | <- | Minus |
3L | 9490566..9490815 | 272..521 | 100 | <- | Minus |
3L | 9491474..9491626 | 119..271 | 100 | <- | Minus |
3L | 9491698..9491799 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:47 Download gff for
BS04221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9484798..9484899 | 17..118 | 100 | | Minus |
arm_3L | 9483263..9483331 | 707..775 | 100 | <- | Minus |
arm_3L | 9483423..9483607 | 522..706 | 100 | <- | Minus |
arm_3L | 9483666..9483915 | 272..521 | 100 | <- | Minus |
arm_3L | 9484574..9484726 | 119..271 | 100 | <- | Minus |
BS04221.pep Sequence
Translation from 16 to 774
> BS04221.pep
MSTPYVILLIGLLYLCVGPFIIAQGSEFAERNHKKRQIYREQVLPHAGGK
IPDTAFETDRLFLNRLQKEGIAVPDGIVPEQRNPQVYQYYSKPMRTVFHI
ALSSDGRYTPREGRYHYRQVPTVETTYLYPQAVGRQHVVVPPKHALPIYR
QLQLHNPLLNQVKLQPKKAPNFLELAPTVGKSQSHPLAGSAKAQSYQNVN
LLHGHSPVLPAFKKTSRGSKTYVDSYGTTHLFSEFDDLLNKLDLQQTGRK
NY*
BS04221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-PB | 252 | CG32037-PB | 1..252 | 1..252 | 1330 | 100 | Plus |
CG32037-PA | 252 | CG32037-PA | 1..252 | 1..252 | 1330 | 100 | Plus |