Clone BS04221 Report

Search the DGRC for BS04221

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG32037-RA
Protein status:BS04221.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04221.3prime Sequence

789 bp (788 high quality bases) assembled on 2005-12-01

> BS04221.3prime
ATGGTCTAGAAAGCTTCTAATAATTCTTTCGTCCCGTTTGCTGCAGGTCC
AGTTTGTTCAGCAGATCGTCAAACTCGCTGAAGAGATGGGTTGTGCCATA
GCTGTCCACATAGGTCTTGCTGCCCCTGGAGGTTTTCTTGAAAGCGGGCA
GCACCGGACTGTGACCATGCAGAAGATTCACATTCTGATAAGACTGCGCC
TTGGCCGAACCGGCCAATGGATGCGACTGACTCTTGCCAACCGTGGGCGC
CAGTTCCAGAAAATTGGGCGCCTTCTTTGGCTGCAACTTGACCTGGTTGA
GCAGCGGATTGTGCAACTGAAGCTGCCGGTAGATGGGCAGGGCGTGCTTC
GGTGGCACCACCACGTGCTGGCGGCCCACCGCCTGCGGGTACAGGTACGT
GGTCTCCACCGTTGGCACCTGGCGGTAGTGGTATCGTCCCTCCCGCGGCG
TATACCTCCCATCCGAGCTCAGGGCGATGTGGAAGACGGTGCGCATGGGC
TTGCTGTAGTACTGATACACCTGCGGATTCCGCTGCTCGGGAACTATCCC
ATCTGGCACTGCGATGCCCTCCTTCTGCAGGCGATTCAAAAACAATCGAT
CCGTCTCAAAGGCGGTGTCGGGTATCTTACCACCCGCATGTGGCAATACT
TGTTCCCGATAGATTTGGCGTTTCTTGTGGTTGCGCTCAGCAAACTCCGA
GCCTTGGGCAATTATGAATGGGCCCACGCAAAGATATAGTAAACCGATCA
GCAAGATCACATATGGCGTAGACATGTCGACTGATAACT

BS04221.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32037-PA 759 CG32037-RA 1..759 775..17 3795 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG32037-RB 1836 CG32037-RB 417..1175 775..17 3795 100 Minus
CG32037-RA 1540 CG32037-RA 417..1175 775..17 3795 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9490566..9490818 271..523 1265 100 Plus
3L 28110227 3L 9490323..9490508 86..271 930 100 Plus
3L 28110227 3L 9491472..9491630 519..677 795 100 Plus
3L 28110227 3L 9491698..9491799 674..775 510 100 Plus
3L 28110227 3L 9490163..9490231 17..85 345 100 Plus
Blast to na_te.dros performed on 2015-01-30 16:01:10 has no hits.

BS04221.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:56 Download gff for BS04221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32037-PA 1..759 17..775 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:38 Download gff for BS04221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32037-PA 1..759 17..775 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:19:49 Download gff for BS04221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 408..1178 10..783 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:20 Download gff for BS04221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 408..1178 10..783 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:20 Download gff for BS04221.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9490159..9490231 10..85 94 <- Plus
3L 9490323..9490507 86..270 100 <- Plus
3L 9490566..9490815 271..520 100 <- Plus
3L 9491474..9491626 521..673 100 <- Plus
3L 9491698..9491808 674..783 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:19:49 Download gff for BS04221.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9484798..9484908 674..783 97   Plus
arm_3L 9483259..9483331 10..85 94 <- Plus
arm_3L 9483423..9483607 86..270 100 <- Plus
arm_3L 9483666..9483915 271..520 100 <- Plus
arm_3L 9484574..9484726 521..673 100 <- Plus

BS04221.5prime Sequence

789 bp (788 high quality bases) assembled on 2005-11-29

> BS04221.5prime
GAAGTTATCAGTCGACATGTCTACGCCATATGTGATCTTGCTGATCGGTT
TACTATATCTTTGCGTGGGCCCATTCATAATTGCCCAAGGCTCGGAGTTT
GCTGAGCGCAACCACAAGAAACGCCAAATCTATCGGGAACAAGTATTGCC
ACATGCGGGTGGTAAGATACCCGACACCGCCTTTGAGACGGATCGATTGT
TTTTGAATCGCCTGCAGAAGGAGGGCATCGCAGTGCCAGATGGGATAGTT
CCCGAGCAGCGGAATCCGCAGGTGTATCAGTACTACAGCAAGCCCATGCG
CACCGTCTTCCACATCGCCCTGAGCTCGGATGGGAGGTATACGCCGCGGG
AGGGACGATACCACTACCGCCAGGTGCCAACGGTGGAGACCACGTACCTG
TACCCGCAGGCGGTGGGCCGCCAGCACGTGGTGGTGCCACCGAAGCACGC
CCTGCCCATCTACCGGCAGCTTCAGTTGCACAATCCGCTGCTCAACCAGG
TCAAGTTGCAGCCAAAGAAGGCGCCCAATTTTCTGGAACTGGCGCCCACG
GTTGGCAAGAGTCAGTCGCATCCATTGGCCGGTTCGGCCAAGGCGCAGTC
TTATCAGAATGTGAATCTTCTGCATGGTCACAGTCCGGTGCTGCCCGCTT
TCAAGAAAACCTCCAGGGGCAGCAAGACCTATGTGGACAGCTATGGCACA
ACCCATCTCTTCAGCGAGTTTGACGATCTGCTGAACAAACTGGACCTGCA
GCAAACGGGACGAAAGAATTATTAGAAGCTTTCTAGACC

BS04221.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32037-PA 759 CG32037-RA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG32037-RB 1836 CG32037-RB 417..1175 17..775 3795 100 Plus
CG32037-RA 1540 CG32037-RA 417..1175 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9490566..9490818 521..269 1265 100 Minus
3L 28110227 3L 9490323..9490508 706..521 930 100 Minus
3L 28110227 3L 9491472..9491630 273..115 795 100 Minus
3L 28110227 3L 9491698..9491799 118..17 510 100 Minus
3L 28110227 3L 9490163..9490231 775..707 345 100 Minus
Blast to na_te.dros performed on 2015-02-02 12:18:11 has no hits.

BS04221.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:57 Download gff for BS04221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32037-PA 1..759 17..775 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:39 Download gff for BS04221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32037-PA 1..759 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:58:10 Download gff for BS04221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 408..1178 9..782 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:39:30 Download gff for BS04221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 408..1178 9..782 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:39:30 Download gff for BS04221.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9491698..9491808 9..118 97   Minus
3L 9490159..9490231 707..782 94 <- Minus
3L 9490323..9490507 522..706 100 <- Minus
3L 9490566..9490815 272..521 100 <- Minus
3L 9491474..9491626 119..271 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:58:10 Download gff for BS04221.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9483259..9483331 707..782 94 <- Minus
arm_3L 9483423..9483607 522..706 100 <- Minus
arm_3L 9483666..9483915 272..521 100 <- Minus
arm_3L 9484574..9484726 119..271 100 <- Minus
arm_3L 9484798..9484908 9..118 97   Minus

BS04221.complete Sequence

791 bp (791 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634881

> BS04221.complete
GAAGTTATCAGTCGACATGTCTACGCCATATGTGATCTTGCTGATCGGTT
TACTATATCTTTGCGTGGGCCCATTCATAATTGCCCAAGGCTCGGAGTTT
GCTGAGCGCAACCACAAGAAACGCCAAATCTATCGGGAACAAGTATTGCC
ACATGCGGGTGGTAAGATACCCGACACCGCCTTTGAGACGGATCGATTGT
TTTTGAATCGCCTGCAGAAGGAGGGCATCGCAGTGCCAGATGGGATAGTT
CCCGAGCAGCGGAATCCGCAGGTGTATCAGTACTACAGCAAGCCCATGCG
CACCGTCTTCCACATCGCCCTGAGCTCGGATGGGAGGTATACGCCGCGGG
AGGGACGATACCACTACCGCCAGGTGCCAACGGTGGAGACCACGTACCTG
TACCCGCAGGCGGTGGGCCGCCAGCACGTGGTGGTGCCACCGAAGCACGC
CCTGCCCATCTACCGGCAGCTTCAGTTGCACAATCCGCTGCTCAACCAGG
TCAAGTTGCAGCCAAAGAAGGCGCCCAATTTTCTGGAACTGGCGCCCACG
GTTGGCAAGAGTCAGTCGCATCCATTGGCCGGTTCGGCCAAGGCGCAGTC
TTATCAGAATGTGAATCTTCTGCATGGTCACAGTCCGGTGCTGCCCGCTT
TCAAGAAAACCTCCAGGGGCAGCAAGACCTATGTGGACAGCTATGGCACA
ACCCATCTCTTCAGCGAGTTTGACGATCTGCTGAACAAACTGGACCTGCA
GCAAACGGGACGAAAGAATTATTAGAAGCTTTCTAGACCAT

BS04221.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG32037-RB 759 CG32037-PB 1..759 17..775 3795 100 Plus
CG32037-RA 759 CG32037-PA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32037-RB 1836 CG32037-RB 417..1175 17..775 3795 100 Plus
CG32037-RA 1540 CG32037-RA 417..1175 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9490566..9490818 521..269 1265 100 Minus
3L 28110227 3L 9490323..9490508 706..521 930 100 Minus
3L 28110227 3L 9491472..9491630 273..115 795 100 Minus
3L 28110227 3L 9491698..9491799 118..17 510 100 Minus
3L 28110227 3L 9490163..9490231 775..707 345 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:44:39 has no hits.

BS04221.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:03 Download gff for BS04221.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 1..759 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:29 Download gff for BS04221.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 387..1157 9..782 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:47 Download gff for BS04221.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 417..1175 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:03 Download gff for BS04221.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 387..1157 9..782 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:30 Download gff for BS04221.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 417..1175 17..775 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:30 Download gff for BS04221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9490163..9490231 707..775 100 <- Minus
3L 9490323..9490507 522..706 100 <- Minus
3L 9490566..9490815 272..521 100 <- Minus
3L 9491474..9491626 119..271 100 <- Minus
3L 9491698..9491799 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:47 Download gff for BS04221.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9484798..9484899 17..118 100   Minus
arm_3L 9483263..9483331 707..775 100 <- Minus
arm_3L 9483423..9483607 522..706 100 <- Minus
arm_3L 9483666..9483915 272..521 100 <- Minus
arm_3L 9484574..9484726 119..271 100 <- Minus

BS04221.pep Sequence

Translation from 16 to 774

> BS04221.pep
MSTPYVILLIGLLYLCVGPFIIAQGSEFAERNHKKRQIYREQVLPHAGGK
IPDTAFETDRLFLNRLQKEGIAVPDGIVPEQRNPQVYQYYSKPMRTVFHI
ALSSDGRYTPREGRYHYRQVPTVETTYLYPQAVGRQHVVVPPKHALPIYR
QLQLHNPLLNQVKLQPKKAPNFLELAPTVGKSQSHPLAGSAKAQSYQNVN
LLHGHSPVLPAFKKTSRGSKTYVDSYGTTHLFSEFDDLLNKLDLQQTGRK
NY*

BS04221.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32037-PB 252 CG32037-PB 1..252 1..252 1330 100 Plus
CG32037-PA 252 CG32037-PA 1..252 1..252 1330 100 Plus