Clone Sequence Records
BS04223.3prime Sequence
851 bp (796 high quality bases) assembled on 2005-12-01
> BS04223.3prime
ATGGTCTAGAAAGCTTCTAGTTTTTCTCAATAGCTTCTTTTGGTGGCTCC
CACCTATCCAAGAGCTCCTTTAGTCGTTCCCTTCGATGTTCCAGTTGCAA
CTTCTCTATTAGTCCACTCAGTTGGTCGCCGCCCTTGAGGAAACCATTGA
GGTTGTGCAGCGTACCGCCTTGAATTCGATGATCCGTTATGCGGTCCTGG
ACGAAATTGTAGGTACGGATCTTCTCATTGCGATTGAGACTACCCTGTTG
CGCCTTCTTGGTGGCCATTTTGCTAGCCTCAACGCTCTCCAACTGCTGTT
GCACAAGTCGCGACCGTAGACGCTTCATCGCTAGCTCCCGGTTTTTGAGC
TGGGAGCGTTCCGATTGCGCCTCCACCGCCAGACCCGTGGGCAGATGAAC
AATTCTTACAGCCGAGTCGGTGGTGTTAACATGCTGTCCACCAGCTCCAC
TCGCTCGCTTCGTCTCGATCTTCAGATCCTTCTCAGCGATGTGCACTTGG
ATGTCGGCGGGTCGGGGAATCACTGTAATTGAGGCGGTGCTGGTGTGCAT
GCGTCCAGACTTTTCAGTGGCCGGCACCCGCTGTACGCGGTGAACTCCAG
CCTCATAGCGCAGCCAGCGGAAGGCATCCTCGCCGCTCACCATCAGACTA
GCGTGCCGCAGACCCCCGATGTCGGTGCCCTCGCTGGCAAACTCCTCCCA
CTCCCAGCCCATGTGCTCGAAATAGCCGGTGTACATTTCGTACAATTCTT
GGGCGAATAGCATTGCCTCCTGGCCACCGGCGCCGGCATTCAGGCCGAAG
ATCAGAGCCGGATACTCCTCATCGTCAGAGAGCGTAAGCAGCTCCTGCAG
T
BS04223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5705-PA | 1179 | CG5705-RA | 345..1179 | 851..17 | 4175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5705-RA | 1420 | CG5705-RA | 453..1288 | 851..16 | 4180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13220431..13221266 | 851..16 | 4180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:49:31 has no hits.
BS04223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:00 Download gff for
BS04223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-PA | 345..1179 | 17..851 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:43 Download gff for
BS04223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-PA | 345..1179 | 17..851 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:34:23 Download gff for
BS04223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 453..1294 | 8..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:30 Download gff for
BS04223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 453..1294 | 8..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:30 Download gff for
BS04223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13220431..13221272 | 8..851 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:34:23 Download gff for
BS04223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13220431..13221272 | 8..851 | 99 | | Minus |
BS04223.5prime Sequence
866 bp (781 high quality bases) assembled on 2005-11-29
> BS04223.5prime
GAAGTTATCAGTCGACATGATATCGCGCAAACTACTAAACCTTCGACTGG
GTTACCTGGCACGCCGTTGGGCCAGCACGGATCCGCTGAGCATTCAGAAC
GAGAAGCTGCAGGCTTATTTGGAGTCTCTACGCCAGGAATACTACGCCGT
GCGAGTCAACGCCGCCGGAAACAGCAAATCCTACGCCCGTCTCGCCCAGC
TGGAGGGCGTGGTCAGTGCCCTGGAGCAGCGACGCGTACTAGAACGGCAC
ATCACCAGCGCCAAGGACATGGAAGCGGAGAAGGACGAGGATATGCGTGA
GCTAATGCGCGAGGAGAACGAAGTCTATGTGGATCTACTGGGCAAGCAGG
ATCAGGCCTTACTGCAGGAGCTGCTTACGCTCTCTGACGATGAGGAGTAT
CCGGCTCTGATCTTCGGCCTGAATGCCGGCGCCGGTGGCCAGGAGGCAAT
GCTATTCGCCCAAGAATTGTACGAAATGTACACCGGCTATTTCGAGCACA
TGGGCTGGGAGTGGGAGGAGTTTGCCAGCGAGGGCACCGACATCGGGGGT
CTGCGGCACGCTAGTCTGATGGTGAGCGGCGAGGATGCCTTCCGCTGGCT
GCGCTATGAGGCTGGAGTTCACCGCGTACAGCGGGTGCCGGCCACTGAAA
AGTCTGGACGCATGCACACCAGCACCGCCTCAATTACAGTGATTCCCCGA
CCCGCCGACATCCAAGTGCACATCGCTGAGAAGGATCTGAAGATCGAGAC
GAAGCGAGCGAGTGGAGCTGGTGGACAGCATGTTAACACCACCGACTCGG
CTGTAAGAATTGTTCATCTGCCCACGGGTCTGGCGGTGGAGGCGCAATCG
GAACGCTCCCAGCTCA
BS04223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5705-PA | 1179 | CG5705-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5705-RA | 1420 | CG5705-RA | 109..958 | 17..866 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13220087..13220936 | 17..866 | 4250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:50:17 has no hits.
BS04223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:01 Download gff for
BS04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:45 Download gff for
BS04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:54:44 Download gff for
BS04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 109..957 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:10:13 Download gff for
BS04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 109..957 | 17..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:10:13 Download gff for
BS04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13220087..13220935 | 17..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:54:44 Download gff for
BS04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13220087..13220935 | 17..865 | 100 | | Plus |
BS04223.complete Sequence
1211 bp (1211 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634882
> BS04223.complete
GAAGTTATCAGTCGACATGATATCGCGCAAACTACTAAACCTTCGACTGG
GTTACCTGGCACGCCGTTGGGCCAGCACGGATCCGCTGAGCATTCAGAAC
GAGAAGCTGCAGGCTTATTTGGAGTCTCTACGCCAGGAATACTACGCCGT
GCGAGTCAACGCCGCCGGAAACAGCAAATCCTACGCCCGTCTCGCCCAGC
TGGAGGGCGTGGTCAGTGCCCTGGAGCAGCGACGCGTACTAGAACGGCAC
ATCACCAGCGCCAAGGACATGGAAGCGGAGAAGGACGAGGATATGCGTGA
GCTAATGCGCGAGGAGAACGAAGTCTATGTGGATCTACTGGGCAAGCAGG
ATCAGGCCTTACTGCAGGAGCTGCTTACGCTCTCTGACGATGAGGAGTAT
CCGGCTCTGATCTTCGGCCTGAATGCCGGCGCCGGTGGCCAGGAGGCAAT
GCTATTCGCCCAAGAATTGTACGAAATGTACACCGGCTATTTCGAGCACA
TGGGCTGGGAGTGGGAGGAGTTTGCCAGCGAGGGCACCGACATCGGGGGT
CTGCGGCACGCTAGTCTGATGGTGAGCGGCGAGGATGCCTTCCGCTGGCT
GCGCTATGAGGCTGGAGTTCACCGCGTACAGCGGGTGCCGGCCACTGAAA
AGTCTGGACGCATGCACACCAGCACCGCCTCAATTACAGTGATTCCCCGA
CCCGCCGACATCCAAGTGCACATCGCTGAGAAGGATCTGAAGATCGAGAC
GAAGCGAGCGAGTGGAGCTGGTGGACAGCATGTTAACACCACCGACTCGG
CTGTAAGAATTGTTCATCTGCCCACGGGTCTGGCGGTGGAGGCGCAATCG
GAACGCTCCCAGCTCAAAAACCGGGAGCTAGCGATGAAGCGTCTACGGTC
GCGACTTGTGCAACAGCAGTTGGAGAGCGTTGAGGCTAGCAAAATGGCCA
CCAAGAAGGCGCAACAGGGTAGTCTCAATCGCAATGAGAAGATCCGTACC
TACAATTTCGTCCAGGACCGCATAACGGATCATCGAATTCAAGGCGGTAC
GCTGCACAACCTCAATGGTTTCCTCAAGGGCGGCGACCAACTGAGTGGAC
TAATAGAGAAGTTGCAACTGGAACATCGAAGGGAACGACTAAAGGAGCTC
TTGGATAGGTGGGAGCCACCAAAAGAAGCTATTGAGAAAAACTAGAAGCT
TTCTAGACCAT
BS04223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5705-RA | 1179 | CG5705-PA | 1..1179 | 17..1195 | 5895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5705-RA | 1420 | CG5705-RA | 109..1288 | 17..1196 | 5900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13220087..13221266 | 17..1196 | 5900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:58:15 has no hits.
BS04223.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:04 Download gff for
BS04223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 1..1179 | 17..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:31 Download gff for
BS04223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 100..1285 | 17..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:27 Download gff for
BS04223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 109..1287 | 17..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:04 Download gff for
BS04223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 100..1285 | 17..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:00 Download gff for
BS04223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 109..1287 | 17..1195 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:00 Download gff for
BS04223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13220087..13221265 | 17..1195 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:27 Download gff for
BS04223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13220087..13221265 | 17..1195 | 100 | | Plus |
BS04223.pep Sequence
Translation from 16 to 1194
> BS04223.pep
MISRKLLNLRLGYLARRWASTDPLSIQNEKLQAYLESLRQEYYAVRVNAA
GNSKSYARLAQLEGVVSALEQRRVLERHITSAKDMEAEKDEDMRELMREE
NEVYVDLLGKQDQALLQELLTLSDDEEYPALIFGLNAGAGGQEAMLFAQE
LYEMYTGYFEHMGWEWEEFASEGTDIGGLRHASLMVSGEDAFRWLRYEAG
VHRVQRVPATEKSGRMHTSTASITVIPRPADIQVHIAEKDLKIETKRASG
AGGQHVNTTDSAVRIVHLPTGLAVEAQSERSQLKNRELAMKRLRSRLVQQ
QLESVEASKMATKKAQQGSLNRNEKIRTYNFVQDRITDHRIQGGTLHNLN
GFLKGGDQLSGLIEKLQLEHRRERLKELLDRWEPPKEAIEKN*
BS04223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5705-PA | 392 | CG5705-PA | 1..392 | 1..392 | 1986 | 100 | Plus |
