Clone BS04225 Report

Search the DGRC for BS04225

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG33213-RA
Protein status:BS04225.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04225.3prime Sequence

930 bp (903 high quality bases) assembled on 2005-12-01

> BS04225.3prime
ATGGTCTAGAAAGCTTTCATAGCTCCTTCTTGAGGACCCTGGACAGCCGT
CTAAAATGGCCAAGGATGCACTGTCTCCGGTGCCGCAGGCATACCCGCTC
GCTGCTGAAACGCTTCAAGCAAACTGAGCAACGTCTGGGATCACCTCTTC
CATTGGGCAACCCGTTGTGTTCGCGAAATAGGACGACCACTTTCGCCTTG
GCACAACTCTGTTCTTTTTTTCGGTGTACCAAAAGAGAGGTGGTGGTCTT
GAAGTAACGTTTGCACTGAAGACATCTGTAGCACTTCCTGCCGCTATGGT
TTCTCAGGTGCCTGAGCAACTGCATCTCTGAGTGGCTCATGGCGTTGCAG
AGTAGATGTGGGCATTTAAAGAGCATCGATGACTTCCTGGGCGCTAGAGC
GGGACAGCTCAGACTGTGTTGCTTCAATTGTTTCTGGTGGTCCAGACGCT
GACCACAGCGAAAGCACAGAGCACCAGGTCCATAGTGCGCGGTCATGTGG
CTCTGGTGCTCCAGCAAGGTTTTGGCCACATCGCCGCACACCGCGCACTC
CATCATGCCGTTGGGAAATATGAATGTGTTCTCGCTCACGTAGGTGAGAA
ATTTGTCGGAATTGGAGGCCTCAGAACCGGTATCCTTTGGCCGTTCCTCT
GGTAAATACCACTCCTCCGAATCGCGACGGCATTGAATGCCCGCATCCTT
AGTGCCCGCATTCTCTGTTTGAATGGCGCGCTCTCTGCGCGGCACCATAG
CCTCGTTCGCAAACATTCCAGTGACCTCGTTGAGTCTCTTCTGCTGTACG
GATTTCTTGGGAGACTCTGTAGCGCCTCCATTGGTGATCGGGGCATGCAG
TTCTTTCACTGGAATGCCATTCTCTATCGCGTACTTGCGTGTCACCCACT
TGGTCTCCACGCACACGTATCCCGGCAGCT

BS04225.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-PA 1026 CG33213-RA 113..1026 930..17 4545 99.8 Minus
CG33221-PA 1314 CG33221-RA 728..1147 603..184 1500 94.2 Minus
CG33221-PA 1314 CG33221-RA 1161..1314 170..17 545 94.1 Minus
CG33221-PA 1314 CG33221-RA 589..723 742..608 525 95.5 Minus
CG33221-PA 1314 CG33221-RA 126..282 917..761 510 92.9 Minus
CG33221-PA 1314 CG33221-RA 432..588 917..761 435 91 Minus
CG33221-PA 1314 CG33221-RA 283..331 742..694 220 97.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-RA 1279 CG33213-RA 290..1204 930..16 4560 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27918257..27919171 16..930 4560 99.9 Plus
X 23542271 X 3797581..3798477 16..930 3310 91 Plus
X 23542271 X 3798561..3798781 690..928 650 85.8 Plus
Blast to na_te.dros performed on 2015-02-12 04:34:51 has no hits.

BS04225.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:04 Download gff for BS04225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-PA 113..1026 17..930 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:49 Download gff for BS04225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-PA 113..1026 17..930 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:06:20 Download gff for BS04225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 303..1228 5..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:24 Download gff for BS04225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 290..1215 5..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:24 Download gff for BS04225.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27918246..27919171 5..930 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:06:20 Download gff for BS04225.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23743968..23744893 5..930 99   Plus

BS04225.5prime Sequence

864 bp (812 high quality bases) assembled on 2005-11-29

> BS04225.5prime
GAAGTTATCAGTCGACATGTACCCGGCGCAACCGGCAAAGGTGGCGTTGG
CCGGTCAACCGATATCCGCCGGAAAACCACCACGCCACAGCCCTGTTCAG
ATGAAGTCTATCCCTTTGCCCGTCTTCGAGCTGCCGGAATACGTGTGCGT
GGAGACCAAGTGGGTGACACGCAAGTACGCGATAGAGAATGGCATTCCAG
TGAAAGAACTGCATGCCCCGATCACCAATGGAGGCGCTACAGAGTCTCCC
AAGAAATCCGTACAGCAGAAGAGACTCAACGAGGTCACTGGAATGTTTGC
GAACGAGGCTATGGTGCCGCGCAGAGAGCGCGCCATTCAAACAGAGAATG
CGGGCACTAAGGATGCGGGCATTCAATGCCGTCGCGATTCGGAGGAGTGG
TATTTACCAGAGGAACGGCCAAAGGATACCGGTTCTGAGGCCTCCAATTC
CGACAAATTTCTCACCTACGTGAGCGAGAACACATTCATATTTCCCAACG
GCATGATGGAGTGCGCGGTGTGCGGCGATGTGGCCAAAACCTTGCTGGAG
CACCAGAGCCACATGACCGCGCACTATGGACCTGGTGCTCTGTGCTTTCG
CTGTGGTCAGCGTCTGGACCACCAGAAACAATTGAAGCAACACAGTCTGA
GCTGTCCCGCTCTAGCGCCCAGGAAGTCATCGATGCTCTTTAAATGCCCA
CATCTACTCTGCAACGCCATGAGCCACTCAGAGATGCAGTTGCTCAGGCA
CCTGAGAAACCATAGCGGCAGGAAGTGCTACAGATGTCTTCAGTGCAAAC
GTTACTTCAAGACCACCACCTCTCTTTTGGTACACCGAAAAAAGAACAGA
GTTGTGCCAAGGCG

BS04225.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-PA 1026 CG33213-RA 1..827 17..843 4135 100 Plus
CG33221-PA 1314 CG33221-RA 728..1115 456..843 1390 94.3 Plus
CG33221-PA 1314 CG33221-RA 589..723 317..451 525 95.5 Plus
CG33221-PA 1314 CG33221-RA 98..282 114..298 525 91.3 Plus
CG33221-PA 1314 CG33221-RA 401..588 111..298 490 90.4 Plus
CG33221-PA 1314 CG33221-RA 1..61 17..77 255 96.7 Plus
CG33221-PA 1314 CG33221-RA 283..331 317..365 220 97.9 Plus
CG33221-PA 1314 CG33221-RA 336..367 46..77 160 100 Plus
CG33213-PA 1026 CG33213-RA 823..849 838..864 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-RA 1279 CG33213-RA 174..1026 13..864 4225 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27918435..27919287 864..13 4200 99.8 Minus
X 23542271 X 3797759..3798565 864..41 2795 89.8 Minus
X 23542271 X 3798561..3798899 369..13 940 84.9 Minus
Blast to na_te.dros performed on 2015-02-04 04:26:42 has no hits.

BS04225.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:05 Download gff for BS04225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-PA 1..849 17..864 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:51 Download gff for BS04225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-PA 1..849 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:11:28 Download gff for BS04225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 184..1039 9..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:52:01 Download gff for BS04225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 171..1026 9..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:52:01 Download gff for BS04225.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27918435..27919290 9..864 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:11:28 Download gff for BS04225.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23744157..23745012 9..864 99   Minus

BS04225.complete Sequence

1058 bp (1058 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634883

> BS04225.complete
GAAGTTATCAGTCGACATGTACCCGGCGCAACCGGCAAAGGTGGCGTTGG
CCGGTCAACCGATATCCGCCGGAAAACCACCACGCCACAGCCCTGTTCAG
ATGAAGTCTATCCCTTTGCCCGTCTTCGAGCTGCCGGAATACGTGTGCGT
GGAGACCAAGTGGGTGACACGCAAGTACGCGATAGAGAATGGCATTCCAG
TGAAAGAACTGCATGCCCCGATCACCAATGGAGGCGCTACAGAGTCTCCC
AAGAAATCCGTACAGCAGAAGAGACTCAACGAGGTCACTGGAATGTTTGC
GAACGAGGCTATGGTGCCGCGCAGAGAGCGCGCCATTCAAACAGAGAATG
CGGGCACTAAGGATGCGGGCATTCAATGCCGTCGCGATTCGGAGGAGTGG
TATTTACCAGAGGAACGGCCAAAGGATACCGGTTCTGAGGCCTCCAATTC
CGACAAATTTCTCACCTACGTGAGCGAGAACACATTCATATTTCCCAACG
GCATGATGGAGTGCGCGGTGTGCGGCGATGTGGCCAAAACCTTGCTGGAG
CACCAGAGCCACATGACCGCGCACTATGGACCTGGTGCTCTGTGCTTTCG
CTGTGGTCAGCGTCTGGACCACCAGAAACAATTGAAGCAACACAGTCTGA
GCTGTCCCGCTCTAGCGCCCAGGAAGTCATCGATGCTCTTTAAATGCCCA
CATCTACTCTGCAACGCCATGAGCCACTCAGAGATGCAGTTGCTCAGGCA
CCTGAGAAACCATAGCGGCAGGAAGTGCTACAGATGTCTTCAGTGCAAAC
GTTACTTCAAGACCACCACCTCTCTTTTGGTACACCGAAAAAAAGAACAG
AGTTGTGCCAAGGCGAAAGTGGTCGTCCTATTTCGCGAACACAACGGGTT
GCCCAATGGAAGAGGTGATCCCAGACGTTGCTCAGTTTGCTTGAAGCGTT
TCAGCAGCGAGCGGGTATGCCTGCGGCACCGGAGACAGTGCATCCTTGGC
CATTTTAGACGGCTGTCCAGGGTCCTCAAGAAGGAGCTATGAAAGCTTTC
TAGACCAT

BS04225.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-RA 1026 CG33213-PA 1..1026 17..1042 5130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-RA 1279 CG33213-RA 174..1204 13..1043 5140 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27918257..27919287 1043..13 5140 99.9 Minus
X 23542271 X 3797581..3798565 1043..41 3525 90.3 Minus
X 23542271 X 3798561..3798899 369..13 940 84.9 Minus
Blast to na_te.dros performed on 2014-11-27 23:39:40 has no hits.

BS04225.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:05 Download gff for BS04225.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 1..1026 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:32 Download gff for BS04225.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 156..1200 9..1054 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:47 Download gff for BS04225.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 191..1215 17..1041 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:06 Download gff for BS04225.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 156..1200 9..1054 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:37 Download gff for BS04225.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 178..1202 17..1041 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:37 Download gff for BS04225.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27918259..27919283 17..1041 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:47 Download gff for BS04225.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23743981..23745005 17..1041 100   Minus

BS04225.pep Sequence

Translation from 16 to 1041

> BS04225.pep
MYPAQPAKVALAGQPISAGKPPRHSPVQMKSIPLPVFELPEYVCVETKWV
TRKYAIENGIPVKELHAPITNGGATESPKKSVQQKRLNEVTGMFANEAMV
PRRERAIQTENAGTKDAGIQCRRDSEEWYLPEERPKDTGSEASNSDKFLT
YVSENTFIFPNGMMECAVCGDVAKTLLEHQSHMTAHYGPGALCFRCGQRL
DHQKQLKQHSLSCPALAPRKSSMLFKCPHLLCNAMSHSEMQLLRHLRNHS
GRKCYRCLQCKRYFKTTTSLLVHRKKEQSCAKAKVVVLFREHNGLPNGRG
DPRRCSVCLKRFSSERVCLRHRRQCILGHFRRLSRVLKKEL*

BS04225.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-PA 341 CG33213-PA 1..341 1..341 1832 100 Plus