Clone Sequence Records
BS04225.3prime Sequence
930 bp (903 high quality bases) assembled on 2005-12-01
> BS04225.3prime
ATGGTCTAGAAAGCTTTCATAGCTCCTTCTTGAGGACCCTGGACAGCCGT
CTAAAATGGCCAAGGATGCACTGTCTCCGGTGCCGCAGGCATACCCGCTC
GCTGCTGAAACGCTTCAAGCAAACTGAGCAACGTCTGGGATCACCTCTTC
CATTGGGCAACCCGTTGTGTTCGCGAAATAGGACGACCACTTTCGCCTTG
GCACAACTCTGTTCTTTTTTTCGGTGTACCAAAAGAGAGGTGGTGGTCTT
GAAGTAACGTTTGCACTGAAGACATCTGTAGCACTTCCTGCCGCTATGGT
TTCTCAGGTGCCTGAGCAACTGCATCTCTGAGTGGCTCATGGCGTTGCAG
AGTAGATGTGGGCATTTAAAGAGCATCGATGACTTCCTGGGCGCTAGAGC
GGGACAGCTCAGACTGTGTTGCTTCAATTGTTTCTGGTGGTCCAGACGCT
GACCACAGCGAAAGCACAGAGCACCAGGTCCATAGTGCGCGGTCATGTGG
CTCTGGTGCTCCAGCAAGGTTTTGGCCACATCGCCGCACACCGCGCACTC
CATCATGCCGTTGGGAAATATGAATGTGTTCTCGCTCACGTAGGTGAGAA
ATTTGTCGGAATTGGAGGCCTCAGAACCGGTATCCTTTGGCCGTTCCTCT
GGTAAATACCACTCCTCCGAATCGCGACGGCATTGAATGCCCGCATCCTT
AGTGCCCGCATTCTCTGTTTGAATGGCGCGCTCTCTGCGCGGCACCATAG
CCTCGTTCGCAAACATTCCAGTGACCTCGTTGAGTCTCTTCTGCTGTACG
GATTTCTTGGGAGACTCTGTAGCGCCTCCATTGGTGATCGGGGCATGCAG
TTCTTTCACTGGAATGCCATTCTCTATCGCGTACTTGCGTGTCACCCACT
TGGTCTCCACGCACACGTATCCCGGCAGCT
BS04225.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33213-PA | 1026 | CG33213-RA | 113..1026 | 930..17 | 4545 | 99.8 | Minus |
CG33221-PA | 1314 | CG33221-RA | 728..1147 | 603..184 | 1500 | 94.2 | Minus |
CG33221-PA | 1314 | CG33221-RA | 1161..1314 | 170..17 | 545 | 94.1 | Minus |
CG33221-PA | 1314 | CG33221-RA | 589..723 | 742..608 | 525 | 95.5 | Minus |
CG33221-PA | 1314 | CG33221-RA | 126..282 | 917..761 | 510 | 92.9 | Minus |
CG33221-PA | 1314 | CG33221-RA | 432..588 | 917..761 | 435 | 91 | Minus |
CG33221-PA | 1314 | CG33221-RA | 283..331 | 742..694 | 220 | 97.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33213-RA | 1279 | CG33213-RA | 290..1204 | 930..16 | 4560 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27918257..27919171 | 16..930 | 4560 | 99.9 | Plus |
X | 23542271 | X | 3797581..3798477 | 16..930 | 3310 | 91 | Plus |
X | 23542271 | X | 3798561..3798781 | 690..928 | 650 | 85.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:34:51 has no hits.
BS04225.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:04 Download gff for
BS04225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-PA | 113..1026 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:49 Download gff for
BS04225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-PA | 113..1026 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:06:20 Download gff for
BS04225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 303..1228 | 5..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:24 Download gff for
BS04225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 290..1215 | 5..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:24 Download gff for
BS04225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27918246..27919171 | 5..930 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:06:20 Download gff for
BS04225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23743968..23744893 | 5..930 | 99 | | Plus |
BS04225.5prime Sequence
864 bp (812 high quality bases) assembled on 2005-11-29
> BS04225.5prime
GAAGTTATCAGTCGACATGTACCCGGCGCAACCGGCAAAGGTGGCGTTGG
CCGGTCAACCGATATCCGCCGGAAAACCACCACGCCACAGCCCTGTTCAG
ATGAAGTCTATCCCTTTGCCCGTCTTCGAGCTGCCGGAATACGTGTGCGT
GGAGACCAAGTGGGTGACACGCAAGTACGCGATAGAGAATGGCATTCCAG
TGAAAGAACTGCATGCCCCGATCACCAATGGAGGCGCTACAGAGTCTCCC
AAGAAATCCGTACAGCAGAAGAGACTCAACGAGGTCACTGGAATGTTTGC
GAACGAGGCTATGGTGCCGCGCAGAGAGCGCGCCATTCAAACAGAGAATG
CGGGCACTAAGGATGCGGGCATTCAATGCCGTCGCGATTCGGAGGAGTGG
TATTTACCAGAGGAACGGCCAAAGGATACCGGTTCTGAGGCCTCCAATTC
CGACAAATTTCTCACCTACGTGAGCGAGAACACATTCATATTTCCCAACG
GCATGATGGAGTGCGCGGTGTGCGGCGATGTGGCCAAAACCTTGCTGGAG
CACCAGAGCCACATGACCGCGCACTATGGACCTGGTGCTCTGTGCTTTCG
CTGTGGTCAGCGTCTGGACCACCAGAAACAATTGAAGCAACACAGTCTGA
GCTGTCCCGCTCTAGCGCCCAGGAAGTCATCGATGCTCTTTAAATGCCCA
CATCTACTCTGCAACGCCATGAGCCACTCAGAGATGCAGTTGCTCAGGCA
CCTGAGAAACCATAGCGGCAGGAAGTGCTACAGATGTCTTCAGTGCAAAC
GTTACTTCAAGACCACCACCTCTCTTTTGGTACACCGAAAAAAGAACAGA
GTTGTGCCAAGGCG
BS04225.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33213-PA | 1026 | CG33213-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
CG33221-PA | 1314 | CG33221-RA | 728..1115 | 456..843 | 1390 | 94.3 | Plus |
CG33221-PA | 1314 | CG33221-RA | 589..723 | 317..451 | 525 | 95.5 | Plus |
CG33221-PA | 1314 | CG33221-RA | 98..282 | 114..298 | 525 | 91.3 | Plus |
CG33221-PA | 1314 | CG33221-RA | 401..588 | 111..298 | 490 | 90.4 | Plus |
CG33221-PA | 1314 | CG33221-RA | 1..61 | 17..77 | 255 | 96.7 | Plus |
CG33221-PA | 1314 | CG33221-RA | 283..331 | 317..365 | 220 | 97.9 | Plus |
CG33221-PA | 1314 | CG33221-RA | 336..367 | 46..77 | 160 | 100 | Plus |
CG33213-PA | 1026 | CG33213-RA | 823..849 | 838..864 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33213-RA | 1279 | CG33213-RA | 174..1026 | 13..864 | 4225 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27918435..27919287 | 864..13 | 4200 | 99.8 | Minus |
X | 23542271 | X | 3797759..3798565 | 864..41 | 2795 | 89.8 | Minus |
X | 23542271 | X | 3798561..3798899 | 369..13 | 940 | 84.9 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:26:42 has no hits.
BS04225.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:05 Download gff for
BS04225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-PA | 1..849 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:51 Download gff for
BS04225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-PA | 1..849 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:11:28 Download gff for
BS04225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 184..1039 | 9..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:52:01 Download gff for
BS04225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 171..1026 | 9..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:52:01 Download gff for
BS04225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27918435..27919290 | 9..864 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:11:28 Download gff for
BS04225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23744157..23745012 | 9..864 | 99 | | Minus |
BS04225.complete Sequence
1058 bp (1058 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634883
> BS04225.complete
GAAGTTATCAGTCGACATGTACCCGGCGCAACCGGCAAAGGTGGCGTTGG
CCGGTCAACCGATATCCGCCGGAAAACCACCACGCCACAGCCCTGTTCAG
ATGAAGTCTATCCCTTTGCCCGTCTTCGAGCTGCCGGAATACGTGTGCGT
GGAGACCAAGTGGGTGACACGCAAGTACGCGATAGAGAATGGCATTCCAG
TGAAAGAACTGCATGCCCCGATCACCAATGGAGGCGCTACAGAGTCTCCC
AAGAAATCCGTACAGCAGAAGAGACTCAACGAGGTCACTGGAATGTTTGC
GAACGAGGCTATGGTGCCGCGCAGAGAGCGCGCCATTCAAACAGAGAATG
CGGGCACTAAGGATGCGGGCATTCAATGCCGTCGCGATTCGGAGGAGTGG
TATTTACCAGAGGAACGGCCAAAGGATACCGGTTCTGAGGCCTCCAATTC
CGACAAATTTCTCACCTACGTGAGCGAGAACACATTCATATTTCCCAACG
GCATGATGGAGTGCGCGGTGTGCGGCGATGTGGCCAAAACCTTGCTGGAG
CACCAGAGCCACATGACCGCGCACTATGGACCTGGTGCTCTGTGCTTTCG
CTGTGGTCAGCGTCTGGACCACCAGAAACAATTGAAGCAACACAGTCTGA
GCTGTCCCGCTCTAGCGCCCAGGAAGTCATCGATGCTCTTTAAATGCCCA
CATCTACTCTGCAACGCCATGAGCCACTCAGAGATGCAGTTGCTCAGGCA
CCTGAGAAACCATAGCGGCAGGAAGTGCTACAGATGTCTTCAGTGCAAAC
GTTACTTCAAGACCACCACCTCTCTTTTGGTACACCGAAAAAAAGAACAG
AGTTGTGCCAAGGCGAAAGTGGTCGTCCTATTTCGCGAACACAACGGGTT
GCCCAATGGAAGAGGTGATCCCAGACGTTGCTCAGTTTGCTTGAAGCGTT
TCAGCAGCGAGCGGGTATGCCTGCGGCACCGGAGACAGTGCATCCTTGGC
CATTTTAGACGGCTGTCCAGGGTCCTCAAGAAGGAGCTATGAAAGCTTTC
TAGACCAT
BS04225.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33213-RA | 1026 | CG33213-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33213-RA | 1279 | CG33213-RA | 174..1204 | 13..1043 | 5140 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27918257..27919287 | 1043..13 | 5140 | 99.9 | Minus |
X | 23542271 | X | 3797581..3798565 | 1043..41 | 3525 | 90.3 | Minus |
X | 23542271 | X | 3798561..3798899 | 369..13 | 940 | 84.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:39:40 has no hits.
BS04225.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:05 Download gff for
BS04225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:32 Download gff for
BS04225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 156..1200 | 9..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:47 Download gff for
BS04225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 191..1215 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:06 Download gff for
BS04225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 156..1200 | 9..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:37 Download gff for
BS04225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 178..1202 | 17..1041 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:37 Download gff for
BS04225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27918259..27919283 | 17..1041 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:47 Download gff for
BS04225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23743981..23745005 | 17..1041 | 100 | | Minus |
BS04225.pep Sequence
Translation from 16 to 1041
> BS04225.pep
MYPAQPAKVALAGQPISAGKPPRHSPVQMKSIPLPVFELPEYVCVETKWV
TRKYAIENGIPVKELHAPITNGGATESPKKSVQQKRLNEVTGMFANEAMV
PRRERAIQTENAGTKDAGIQCRRDSEEWYLPEERPKDTGSEASNSDKFLT
YVSENTFIFPNGMMECAVCGDVAKTLLEHQSHMTAHYGPGALCFRCGQRL
DHQKQLKQHSLSCPALAPRKSSMLFKCPHLLCNAMSHSEMQLLRHLRNHS
GRKCYRCLQCKRYFKTTTSLLVHRKKEQSCAKAKVVVLFREHNGLPNGRG
DPRRCSVCLKRFSSERVCLRHRRQCILGHFRRLSRVLKKEL*
BS04225.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33213-PA | 341 | CG33213-PA | 1..341 | 1..341 | 1832 | 100 | Plus |