Clone Sequence Records
BS04228.3prime Sequence
918 bp (818 high quality bases) assembled on 2005-12-01
> BS04228.3prime
ATGGTCTAGAAAGCTTCTAATGGCGCATCTGCCGCTGTGCCTCCTTCTCC
ACCTCATACTCGTACTCCAGCTGCAGTTTGGGCTTCGAGCGGCTGCGTCG
ACTGTTGCCCGCCGGCGATTTCTTGTCCTTCTTCGCTTTGCTGGCGGTTT
TCTTGGCTGGCACTTTGGTCTCCTCAATATCATCTGCATCCGCATCGTCA
TCCTCGTCGGACTCCTCGAAATCGCTGCCCACCTCGACCTCTTCCCGCTT
GCCGGAATCGCTGTCGTAGTCGTCCTCGTCATCATCATCATCATCATCAT
CATCCTCCTCCTCATCGTCCGTATCTGCCTCGACGAACTCCTCGTCGAGC
AGGGATCTCTGTACTTCCTCAGCTTCGCGTGAATCGTCGCCGTCCACCTC
CATTTCGCGCTCCAGCTGCTCCTCATTCTCGTCTTCGTCGTCTAGCTCCT
CCTCATCATCCTCGTCCACGCGTTCCGCCTCCAGAGCCTTGTTGAAAGCG
GTCTGCGAAAAGTTGTAGATGTCGCGATAGGTGCCATTCTTCAGACGATC
CATCAGCGCCTTCTCGATGTGATTGTCGATCTTGGCGGCCACCAAGGCCT
TCTCCTCGCGCCGCGCCTCCCGCCGTTCGATCTTCGTCGATAGCGGCACA
ATGAGCTTCTGGCGGCGCAACTTCAGACGACGCATTCGTATCAGATATTG
GGTGATCTTGAGGAAACGCTGCTTATTCTTGGCGATCATGTATTTGGGCC
AGAAAACCAAATTCTCGTTGATCTGTTCGATGGCCTTCTCGAAGTTTCTG
GACAACTTGATCCTCTCCCCACATTTGCTCGGCATATGCGCTCTCTCCGC
CGTCTTGATGAACAAATAGATGATGCCCTTCTCCTCGCGAACGGTGGCAT
ATTGTGAATTGGCCAGCG
BS04228.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10648-PA | 1032 | CG10648-RA | 230..1032 | 819..17 | 4015 | 100 | Minus |
CG10648-PA | 1032 | CG10648-RA | 131..226 | 918..823 | 480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbm13-RB | 1535 | CG10648-RB | 230..1131 | 918..17 | 4465 | 99.8 | Minus |
Rbm13-RA | 1238 | CG10648-RA | 230..1131 | 918..17 | 4465 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8902066..8902812 | 918..172 | 3690 | 99.6 | Minus |
X | 23542271 | X | 8903200..8903357 | 174..17 | 790 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 19:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frogger | 2483 | frogger FROGGER 2483bp | 1932..1971 | 248..287 | 110 | 75 | Plus |
BS04228.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:08 Download gff for
BS04228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10648-PA | 131..1032 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:54 Download gff for
BS04228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10648-PA | 131..1032 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:37 Download gff for
BS04228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 238..1139 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:45:21 Download gff for
BS04228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 230..1131 | 17..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:45:21 Download gff for
BS04228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8902066..8902811 | 173..918 | 99 | -> | Minus |
X | 8903202..8903357 | 17..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:37 Download gff for
BS04228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8796099..8796844 | 173..918 | 99 | -> | Minus |
arm_X | 8797235..8797390 | 17..172 | 100 | | Minus |
BS04228.5prime Sequence
819 bp (817 high quality bases) assembled on 2005-11-29
> BS04228.5prime
GAAGTTATCAGTCGACATGCAGCACGACGATGTGGTCTGGAGCATCATCA
ACAAGTCCTTCTGTTCGCACAAAGTGAAAACCGACACACGCACCTTCTGC
CGCCATGAGTACAATCTCACGGGTCTGTGCACACGCAGAACGTGTCCGCT
GGCCAATTCACAATATGCCACCGTTCGCGAGGAGAAGGGCATCATCTATT
TGTTCATCAAGACGGCGGAGAGAGCGCATATGCCGAGCAAATTGTGGGAG
AGGATCAAGTTGTCCAGAAACTTCGAGAAGGCCATCGAACAGATCAACGA
GAATTTGGTTTTCTGGCCCAAATACATGATCGCCAAGAATAAGCAGCGTT
TCCTCAAGATCACCCAATATCTGATACGAATGCGTCGTCTGAAGTTGCGC
CGCCAGAAGCTCATTGTGCCGCTATCGACGAAGATCGAACGGCGGGAGGC
GCGGCGCGAGGAGAAGGCCTTGGTGGCCGCCAAGATCGACAATCACATCG
AGAAGGCGCTGATGGATCGTCTGAAGAATGGCACCTATCGCGACATCTAC
AACTTTTCGCAGACCGCTTTCAACAAGGCTCTGGAGGCGGAACGCGTGGA
CGAGGATGATGAGGAGGAGCTAGACGACGAAGACGAGAATGAGGAGCAGC
TGGAGCGCGAAATGGAGGTGGACGGCGACGATTCACGCGAAGCTGAGGAA
GTACAGAGATCCCTGCTCGACGAGGAGTTCGTCGAGGCAGATACGGACGA
TGAGGAGGAGGATGATGATGATGATGATGATGATGACGANGACGACTACG
ACAGCGATTCCGGCAAGCG
BS04228.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10648-PA | 1032 | CG10648-RA | 1..803 | 17..819 | 3996 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbm13-RB | 1535 | CG10648-RB | 99..902 | 16..819 | 4009 | 99.9 | Plus |
Rbm13-RA | 1238 | CG10648-RA | 99..902 | 16..819 | 4009 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8901998..8902738 | 79..819 | 3694 | 99.9 | Plus |
X | 23542271 | X | 8901880..8901926 | 32..78 | 235 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 08:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frogger | 2483 | frogger FROGGER 2483bp | 1932..1971 | 817..778 | 112 | 75 | Minus |
BS04228.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:09 Download gff for
BS04228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10648-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:55 Download gff for
BS04228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10648-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:55 Download gff for
BS04228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 104..910 | 13..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:42:22 Download gff for
BS04228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 96..902 | 13..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:42:22 Download gff for
BS04228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8901794..8901812 | 13..31 | 94 | -> | Plus |
X | 8901880..8901926 | 32..78 | 100 | -> | Plus |
X | 8901998..8902738 | 79..819 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:55 Download gff for
BS04228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8795827..8795845 | 13..31 | 94 | -> | Plus |
arm_X | 8795913..8795959 | 32..78 | 100 | -> | Plus |
arm_X | 8796031..8796771 | 79..819 | 99 | | Plus |
BS04228.complete Sequence
1064 bp (1064 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634884
> BS04228.complete
GAAGTTATCAGTCGACATGCAGCACGACGATGTGGTCTGGAGCATCATCA
ACAAGTCCTTCTGTTCGCACAAAGTGAAAACCGACACACGCACCTTCTGC
CGCCATGAGTACAATCTCACGGGTCTGTGCACACGCAGAACGTGTCCGCT
GGCCAATTCACAATATGCCACCGTTCGCGAGGAGAAGGGCATCATCTATT
TGTTCATCAAGACGGCGGAGAGAGCGCATATGCCGAGCAAATTGTGGGAG
AGGATCAAGTTGTCCAGAAACTTCGAGAAGGCCATCGAACAGATCAACGA
GAATTTGGTTTTCTGGCCCAAATACATGATCGCCAAGAATAAGCAGCGTT
TCCTCAAGATCACCCAATATCTGATACGAATGCGTCGTCTGAAGTTGCGC
CGCCAGAAGCTCATTGTGCCGCTATCGACGAAGATCGAACGGCGGGAGGC
GCGGCGCGAGGAGAAGGCCTTGGTGGCCGCCAAGATCGACAATCACATCG
AGAAGGCGCTGATGGATCGTCTGAAGAATGGCACCTATCGCGACATCTAC
AACTTTTCGCAGACCGCTTTCAACAAGGCTCTGGAGGCGGAACGCGTGGA
CGAGGATGATGAGGAGGAGCTAGACGACGAAGACGAGAATGAGGAGCAGC
TGGAGCGCGAAATGGAGGTGGACGGCGACGATTCACGCGAAGCTGAGGAA
GTACAGAGATCCCTGCTCGACGAGGAGTTCGTCGAGGCAGATACGGACGA
TGAGGAGGAGGATGATGATGATGATGATGATGATGACGAGGACGACTACG
ACAGCGATTCCGGCAAGCGGGAAGAGGTCGAGGTGGGCAGCGATTTCGAG
GAGTCCGACGAGGATGACGATGCGGATGCAGATGATATTGAGGAGACCAA
AGTGCCAGCCAAGAAAACCGCCAGCAAAGCGAAGAAGGACAAGAAATCGC
CGGCGGGCAACAGTCGACGCAGCCGCTCGAAGCCCAAACTGCAGCTGGAG
TACGAGTATGAGGTGGAGAAGGAGGCACAGCGGCAGATGCGCCATTAGAA
GCTTTCTAGACCAT
BS04228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbm13-RB | 1032 | CG10648-PB | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Rbm13-RA | 1032 | CG10648-PA | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbm13-RB | 1535 | CG10648-RB | 99..1131 | 16..1048 | 5165 | 100 | Plus |
Rbm13-RA | 1238 | CG10648-RA | 99..1131 | 16..1048 | 5165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8901998..8902812 | 79..893 | 4075 | 100 | Plus |
X | 23542271 | X | 8903200..8903357 | 891..1048 | 790 | 100 | Plus |
X | 23542271 | X | 8901880..8901926 | 32..78 | 235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frogger | 2483 | frogger FROGGER 2483bp | 1932..1971 | 817..778 | 110 | 75 | Minus |
BS04228.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:07 Download gff for
BS04228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 1..1032 | 17..1048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:34 Download gff for
BS04228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 106..1141 | 13..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:02 Download gff for
BS04228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 108..1139 | 17..1048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:07 Download gff for
BS04228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 106..1141 | 13..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:31 Download gff for
BS04228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 100..1131 | 17..1048 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:31 Download gff for
BS04228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8901880..8901926 | 32..78 | 100 | -> | Plus |
X | 8901998..8902811 | 79..892 | 100 | -> | Plus |
X | 8903202..8903357 | 893..1048 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:02 Download gff for
BS04228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8795913..8795959 | 32..78 | 100 | -> | Plus |
arm_X | 8796031..8796844 | 79..892 | 100 | -> | Plus |
arm_X | 8797235..8797390 | 893..1048 | 100 | | Plus |
BS04228.pep Sequence
Translation from 16 to 1047
> BS04228.pep
MQHDDVVWSIINKSFCSHKVKTDTRTFCRHEYNLTGLCTRRTCPLANSQY
ATVREEKGIIYLFIKTAERAHMPSKLWERIKLSRNFEKAIEQINENLVFW
PKYMIAKNKQRFLKITQYLIRMRRLKLRRQKLIVPLSTKIERREARREEK
ALVAAKIDNHIEKALMDRLKNGTYRDIYNFSQTAFNKALEAERVDEDDEE
ELDDEDENEEQLEREMEVDGDDSREAEEVQRSLLDEEFVEADTDDEEEDD
DDDDDDDEDDYDSDSGKREEVEVGSDFEESDEDDDADADDIEETKVPAKK
TASKAKKDKKSPAGNSRRSRSKPKLQLEYEYEVEKEAQRQMRH*
BS04228.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbm13-PB | 343 | CG10648-PB | 1..343 | 1..343 | 1775 | 100 | Plus |
Rbm13-PA | 343 | CG10648-PA | 1..343 | 1..343 | 1775 | 100 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 861..978 | 195..311 | 188 | 33.9 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 861..978 | 195..311 | 188 | 33.9 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 695..887 | 133..310 | 187 | 29.5 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 695..887 | 133..310 | 187 | 29.5 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 843..937 | 195..290 | 177 | 36.1 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 843..937 | 195..290 | 177 | 36.1 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 802..914 | 195..295 | 171 | 37.2 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 802..914 | 195..295 | 171 | 37.2 | Plus |
Asph-PA | 785 | CG8421-PA | 181..385 | 158..342 | 165 | 26.3 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 822..977 | 192..342 | 159 | 23.7 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 822..977 | 192..342 | 159 | 23.7 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 791..899 | 190..293 | 158 | 31.2 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 791..899 | 190..293 | 158 | 31.2 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 879..975 | 186..287 | 154 | 34.3 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 879..975 | 186..287 | 154 | 34.3 | Plus |