Clone BS04228 Report

Search the DGRC for BS04228

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptRbm13-RA
Protein status:BS04228.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04228.3prime Sequence

918 bp (818 high quality bases) assembled on 2005-12-01

> BS04228.3prime
ATGGTCTAGAAAGCTTCTAATGGCGCATCTGCCGCTGTGCCTCCTTCTCC
ACCTCATACTCGTACTCCAGCTGCAGTTTGGGCTTCGAGCGGCTGCGTCG
ACTGTTGCCCGCCGGCGATTTCTTGTCCTTCTTCGCTTTGCTGGCGGTTT
TCTTGGCTGGCACTTTGGTCTCCTCAATATCATCTGCATCCGCATCGTCA
TCCTCGTCGGACTCCTCGAAATCGCTGCCCACCTCGACCTCTTCCCGCTT
GCCGGAATCGCTGTCGTAGTCGTCCTCGTCATCATCATCATCATCATCAT
CATCCTCCTCCTCATCGTCCGTATCTGCCTCGACGAACTCCTCGTCGAGC
AGGGATCTCTGTACTTCCTCAGCTTCGCGTGAATCGTCGCCGTCCACCTC
CATTTCGCGCTCCAGCTGCTCCTCATTCTCGTCTTCGTCGTCTAGCTCCT
CCTCATCATCCTCGTCCACGCGTTCCGCCTCCAGAGCCTTGTTGAAAGCG
GTCTGCGAAAAGTTGTAGATGTCGCGATAGGTGCCATTCTTCAGACGATC
CATCAGCGCCTTCTCGATGTGATTGTCGATCTTGGCGGCCACCAAGGCCT
TCTCCTCGCGCCGCGCCTCCCGCCGTTCGATCTTCGTCGATAGCGGCACA
ATGAGCTTCTGGCGGCGCAACTTCAGACGACGCATTCGTATCAGATATTG
GGTGATCTTGAGGAAACGCTGCTTATTCTTGGCGATCATGTATTTGGGCC
AGAAAACCAAATTCTCGTTGATCTGTTCGATGGCCTTCTCGAAGTTTCTG
GACAACTTGATCCTCTCCCCACATTTGCTCGGCATATGCGCTCTCTCCGC
CGTCTTGATGAACAAATAGATGATGCCCTTCTCCTCGCGAACGGTGGCAT
ATTGTGAATTGGCCAGCG

BS04228.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10648-PA 1032 CG10648-RA 230..1032 819..17 4015 100 Minus
CG10648-PA 1032 CG10648-RA 131..226 918..823 480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
Rbm13-RB 1535 CG10648-RB 230..1131 918..17 4465 99.8 Minus
Rbm13-RA 1238 CG10648-RA 230..1131 918..17 4465 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8902066..8902812 918..172 3690 99.6 Minus
X 23542271 X 8903200..8903357 174..17 790 100 Minus
Blast to na_te.dros performed 2015-02-12 19:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
frogger 2483 frogger FROGGER 2483bp 1932..1971 248..287 110 75 Plus

BS04228.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:08 Download gff for BS04228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10648-PA 131..1032 17..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:54 Download gff for BS04228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10648-PA 131..1032 17..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:37 Download gff for BS04228.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 238..1139 17..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:45:21 Download gff for BS04228.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 230..1131 17..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:45:21 Download gff for BS04228.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8902066..8902811 173..918 99 -> Minus
X 8903202..8903357 17..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:37 Download gff for BS04228.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8796099..8796844 173..918 99 -> Minus
arm_X 8797235..8797390 17..172 100   Minus

BS04228.5prime Sequence

819 bp (817 high quality bases) assembled on 2005-11-29

> BS04228.5prime
GAAGTTATCAGTCGACATGCAGCACGACGATGTGGTCTGGAGCATCATCA
ACAAGTCCTTCTGTTCGCACAAAGTGAAAACCGACACACGCACCTTCTGC
CGCCATGAGTACAATCTCACGGGTCTGTGCACACGCAGAACGTGTCCGCT
GGCCAATTCACAATATGCCACCGTTCGCGAGGAGAAGGGCATCATCTATT
TGTTCATCAAGACGGCGGAGAGAGCGCATATGCCGAGCAAATTGTGGGAG
AGGATCAAGTTGTCCAGAAACTTCGAGAAGGCCATCGAACAGATCAACGA
GAATTTGGTTTTCTGGCCCAAATACATGATCGCCAAGAATAAGCAGCGTT
TCCTCAAGATCACCCAATATCTGATACGAATGCGTCGTCTGAAGTTGCGC
CGCCAGAAGCTCATTGTGCCGCTATCGACGAAGATCGAACGGCGGGAGGC
GCGGCGCGAGGAGAAGGCCTTGGTGGCCGCCAAGATCGACAATCACATCG
AGAAGGCGCTGATGGATCGTCTGAAGAATGGCACCTATCGCGACATCTAC
AACTTTTCGCAGACCGCTTTCAACAAGGCTCTGGAGGCGGAACGCGTGGA
CGAGGATGATGAGGAGGAGCTAGACGACGAAGACGAGAATGAGGAGCAGC
TGGAGCGCGAAATGGAGGTGGACGGCGACGATTCACGCGAAGCTGAGGAA
GTACAGAGATCCCTGCTCGACGAGGAGTTCGTCGAGGCAGATACGGACGA
TGAGGAGGAGGATGATGATGATGATGATGATGATGACGANGACGACTACG
ACAGCGATTCCGGCAAGCG

BS04228.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10648-PA 1032 CG10648-RA 1..803 17..819 3996 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
Rbm13-RB 1535 CG10648-RB 99..902 16..819 4009 99.9 Plus
Rbm13-RA 1238 CG10648-RA 99..902 16..819 4009 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8901998..8902738 79..819 3694 99.9 Plus
X 23542271 X 8901880..8901926 32..78 235 100 Plus
Blast to na_te.dros performed 2015-02-13 08:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
frogger 2483 frogger FROGGER 2483bp 1932..1971 817..778 112 75 Minus

BS04228.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:09 Download gff for BS04228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10648-PA 1..803 17..819 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:55 Download gff for BS04228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10648-PA 1..803 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:55 Download gff for BS04228.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 104..910 13..819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:42:22 Download gff for BS04228.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 96..902 13..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:42:22 Download gff for BS04228.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8901794..8901812 13..31 94 -> Plus
X 8901880..8901926 32..78 100 -> Plus
X 8901998..8902738 79..819 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:55 Download gff for BS04228.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8795827..8795845 13..31 94 -> Plus
arm_X 8795913..8795959 32..78 100 -> Plus
arm_X 8796031..8796771 79..819 99   Plus

BS04228.complete Sequence

1064 bp (1064 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634884

> BS04228.complete
GAAGTTATCAGTCGACATGCAGCACGACGATGTGGTCTGGAGCATCATCA
ACAAGTCCTTCTGTTCGCACAAAGTGAAAACCGACACACGCACCTTCTGC
CGCCATGAGTACAATCTCACGGGTCTGTGCACACGCAGAACGTGTCCGCT
GGCCAATTCACAATATGCCACCGTTCGCGAGGAGAAGGGCATCATCTATT
TGTTCATCAAGACGGCGGAGAGAGCGCATATGCCGAGCAAATTGTGGGAG
AGGATCAAGTTGTCCAGAAACTTCGAGAAGGCCATCGAACAGATCAACGA
GAATTTGGTTTTCTGGCCCAAATACATGATCGCCAAGAATAAGCAGCGTT
TCCTCAAGATCACCCAATATCTGATACGAATGCGTCGTCTGAAGTTGCGC
CGCCAGAAGCTCATTGTGCCGCTATCGACGAAGATCGAACGGCGGGAGGC
GCGGCGCGAGGAGAAGGCCTTGGTGGCCGCCAAGATCGACAATCACATCG
AGAAGGCGCTGATGGATCGTCTGAAGAATGGCACCTATCGCGACATCTAC
AACTTTTCGCAGACCGCTTTCAACAAGGCTCTGGAGGCGGAACGCGTGGA
CGAGGATGATGAGGAGGAGCTAGACGACGAAGACGAGAATGAGGAGCAGC
TGGAGCGCGAAATGGAGGTGGACGGCGACGATTCACGCGAAGCTGAGGAA
GTACAGAGATCCCTGCTCGACGAGGAGTTCGTCGAGGCAGATACGGACGA
TGAGGAGGAGGATGATGATGATGATGATGATGATGACGAGGACGACTACG
ACAGCGATTCCGGCAAGCGGGAAGAGGTCGAGGTGGGCAGCGATTTCGAG
GAGTCCGACGAGGATGACGATGCGGATGCAGATGATATTGAGGAGACCAA
AGTGCCAGCCAAGAAAACCGCCAGCAAAGCGAAGAAGGACAAGAAATCGC
CGGCGGGCAACAGTCGACGCAGCCGCTCGAAGCCCAAACTGCAGCTGGAG
TACGAGTATGAGGTGGAGAAGGAGGCACAGCGGCAGATGCGCCATTAGAA
GCTTTCTAGACCAT

BS04228.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rbm13-RB 1032 CG10648-PB 1..1032 17..1048 5160 100 Plus
Rbm13-RA 1032 CG10648-PA 1..1032 17..1048 5160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
Rbm13-RB 1535 CG10648-RB 99..1131 16..1048 5165 100 Plus
Rbm13-RA 1238 CG10648-RA 99..1131 16..1048 5165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8901998..8902812 79..893 4075 100 Plus
X 23542271 X 8903200..8903357 891..1048 790 100 Plus
X 23542271 X 8901880..8901926 32..78 235 100 Plus
Blast to na_te.dros performed 2014-11-27 14:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
frogger 2483 frogger FROGGER 2483bp 1932..1971 817..778 110 75 Minus

BS04228.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:07 Download gff for BS04228.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 1..1032 17..1048 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:34 Download gff for BS04228.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 106..1141 13..1048 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:02 Download gff for BS04228.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 108..1139 17..1048 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:07 Download gff for BS04228.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 106..1141 13..1048 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:31 Download gff for BS04228.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 100..1131 17..1048 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:31 Download gff for BS04228.complete
Subject Subject Range Query Range Percent Splice Strand
X 8901880..8901926 32..78 100 -> Plus
X 8901998..8902811 79..892 100 -> Plus
X 8903202..8903357 893..1048 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:02 Download gff for BS04228.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8795913..8795959 32..78 100 -> Plus
arm_X 8796031..8796844 79..892 100 -> Plus
arm_X 8797235..8797390 893..1048 100   Plus

BS04228.pep Sequence

Translation from 16 to 1047

> BS04228.pep
MQHDDVVWSIINKSFCSHKVKTDTRTFCRHEYNLTGLCTRRTCPLANSQY
ATVREEKGIIYLFIKTAERAHMPSKLWERIKLSRNFEKAIEQINENLVFW
PKYMIAKNKQRFLKITQYLIRMRRLKLRRQKLIVPLSTKIERREARREEK
ALVAAKIDNHIEKALMDRLKNGTYRDIYNFSQTAFNKALEAERVDEDDEE
ELDDEDENEEQLEREMEVDGDDSREAEEVQRSLLDEEFVEADTDDEEEDD
DDDDDDDEDDYDSDSGKREEVEVGSDFEESDEDDDADADDIEETKVPAKK
TASKAKKDKKSPAGNSRRSRSKPKLQLEYEYEVEKEAQRQMRH*

BS04228.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rbm13-PB 343 CG10648-PB 1..343 1..343 1775 100 Plus
Rbm13-PA 343 CG10648-PA 1..343 1..343 1775 100 Plus
l(2)01289-PG 1191 CG9432-PG 861..978 195..311 188 33.9 Plus
l(2)01289-PM 1193 CG9432-PM 861..978 195..311 188 33.9 Plus
l(2)01289-PG 1191 CG9432-PG 695..887 133..310 187 29.5 Plus
l(2)01289-PM 1193 CG9432-PM 695..887 133..310 187 29.5 Plus
l(2)01289-PG 1191 CG9432-PG 843..937 195..290 177 36.1 Plus
l(2)01289-PM 1193 CG9432-PM 843..937 195..290 177 36.1 Plus
l(2)01289-PG 1191 CG9432-PG 802..914 195..295 171 37.2 Plus
l(2)01289-PM 1193 CG9432-PM 802..914 195..295 171 37.2 Plus
Asph-PA 785 CG8421-PA 181..385 158..342 165 26.3 Plus
l(2)01289-PG 1191 CG9432-PG 822..977 192..342 159 23.7 Plus
l(2)01289-PM 1193 CG9432-PM 822..977 192..342 159 23.7 Plus
l(2)01289-PG 1191 CG9432-PG 791..899 190..293 158 31.2 Plus
l(2)01289-PM 1193 CG9432-PM 791..899 190..293 158 31.2 Plus
l(2)01289-PG 1191 CG9432-PG 879..975 186..287 154 34.3 Plus
l(2)01289-PM 1193 CG9432-PM 879..975 186..287 154 34.3 Plus