Clone Sequence Records
BS04229.3prime Sequence
839 bp (828 high quality bases) assembled on 2005-12-01
> BS04229.3prime
ATGGTCTAGAAAGCTTCTACTCCTCTCTCCGTTCCGTTGTCGCAACTCTT
GCTCCTGCTCTTGATCCTGCTCCTCCGGCAGATCCTTTATCCGATGGCGC
ACTGCTGATCGACTTGTTCTTGGAGCGCGCCGAGCCATTGGTCAGACGTG
CATTCCCCGAACTGTCTGTGAGATCCTCACTATCACTGGAACGTATGTCA
CCGGACATCAGACCCTTCTGCAGAGAGTCGACAACAATCTTGAGGATCAT
GTATGTCCAGATGACGTGCAGGACGAGCAGCATCAGAAGCAGTGAGTTGA
AGATGTAGTAGGCTGGGAACATGGGCAGAATGCGCGGTGCTTCCACGGAT
GAGCTATAAATGATGCGTGGATAGAAGCCCAGACGCGTAACAATCCACAC
CACTGTGAAGATGGCAAAGATTGCATCGCAGAGCTTCTGATATTTGGCAT
ATTTGGTGAGTTTGGCGGCCTCCAAGAAGATGTCAGCACAATCGTGAACG
ACTAGGACGAGCGAACCGACGCGATGCAGATTGCACACCCAGCTGAGCGA
CATTAGGAGCAGGGTGACCATGTGATGGATGAACATCTGCCAGAAGTCCT
TGCGTTTCACATCGAAGAACTGGGTGCCAGTGAGTGACCAGTAGAAGGAC
ATCGAAATCATGTAGTACCACCAGATATCATTGCTGATCGACTGATGCGG
GTAGCCGTACCAGCAGCTCTTCACATCCCAAAACCAGGGCTTGTCCCACA
GCACGATCACGCCAAAGATGAAGCTGTACAGATAGTAGATGCAACGCCAC
GTGTTCTCGCAGAACTTCACCAGCGTTGACGGTTTATCC
BS04229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3576-PA | 1203 | Lag1-RA | 381..1203 | 839..17 | 4115 | 100 | Minus |
CG3576-PB | 1203 | Lag1-RB | 381..1203 | 839..17 | 4115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
schlank-RB | 2487 | CG3576-RB | 1018..1840 | 839..17 | 4115 | 100 | Minus |
schlank-RA | 2201 | CG3576-RA | 732..1554 | 839..17 | 4115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6258897..6259237 | 354..694 | 1705 | 100 | Plus |
X | 23542271 | X | 6258315..6258507 | 17..209 | 965 | 100 | Plus |
X | 23542271 | X | 6259312..6259459 | 692..839 | 740 | 100 | Plus |
X | 23542271 | X | 6258650..6258796 | 209..355 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:39:20 has no hits.
BS04229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:10 Download gff for
BS04229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lag1-PB | 381..1203 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:56 Download gff for
BS04229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3576-PB | 381..1203 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:19:57 Download gff for
BS04229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
schlank-RA | 732..1554 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:35 Download gff for
BS04229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
schlank-RA | 732..1554 | 17..839 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:35 Download gff for
BS04229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6258650..6258794 | 209..353 | 100 | <- | Plus |
X | 6258315..6258506 | 17..208 | 100 | <- | Plus |
X | 6258897..6259234 | 354..691 | 100 | <- | Plus |
X | 6259312..6259459 | 692..839 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:19:57 Download gff for
BS04229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6152683..6152827 | 209..353 | 100 | <- | Plus |
arm_X | 6152348..6152539 | 17..208 | 100 | <- | Plus |
arm_X | 6152930..6153267 | 354..691 | 100 | <- | Plus |
arm_X | 6153345..6153492 | 692..839 | 100 | | Plus |
BS04229.5prime Sequence
935 bp (772 high quality bases) assembled on 2005-11-29
> BS04229.5prime
GAAGTTATCAGTCGACATGGACATATTGAATGAGTTCAGCAATGTATTCT
GGAGTACGCACATTTGGCTGCCGCCGAACACAACCTGGGCGGACATTGCG
CCCGGCTCGCGTCCAGATGTGGTGCACGCCAACTACAAGGACCTCATATG
GCCCATTCCATTCGCCGCTGTTGTCATGCTGGTCCGCTACACGCTGGAGC
GTTTCTGGATATCGCCCGTAGGCAAATCACTTGGCATACGTAGTTCTAGG
CCTAAGAAAGCGGCAAATGTTCCTATTCTGGAGAAGACCTATGCCAAATC
GACGCGATTGGACAAGAAAAAGCTGGTTCCGCTGTCCAAGCAGACGGATA
TGAGCGAGCGCGAAATCGAGCGCTGGTGGCGTCTACGCAGGGCCCAGGAT
AAACCGTCAACGCTGGTGAAGTTCTGCGAGAACACGTGGCGTTGCATCTA
CTATCTGTACAGCTTCATCTTTGGCGTGATCGTGCTGTGGGACAAGCCCT
GGTTTTGGGATGTGAAGAGCTGCTGGTACGGCTACCCGCATCAGTCGATC
AGCAATGATATCTGGTGGTACTACATGATTTCGATGTCCTTCTACTGGTC
ACTCACTGGCACCCAGTTCTTCGATGTGAAACGCAAGGACTTCTGGCAGA
TGTTCATCCATCACATGGTCACCCTGCTCCTAATGTCGCTCAGCTGGGTG
TGCAATCTGCATCGCGTCGGTTCGCTCGTCCTAGTCGTTCACGATTGTGC
TGACATCTTCTTGGAGGCCGCCAAACTCACCAAATATGCCAAATATCAGA
AGCTCTGCGATGCAATCTTTGCCATCTTCACAGTGGGTGTGGATTGTTAC
GCGTCTGGGCTTCTATCCACGCATCATTTATAGCTCATCCGTGGAAGCAC
CGCGCATTCTGCCCATGTTCCCAGCCTACTACATC
BS04229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3576-PA | 1203 | Lag1-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
CG3576-PB | 1203 | Lag1-RB | 1..820 | 17..836 | 4100 | 100 | Plus |
CG3576-PA | 1203 | Lag1-RA | 819..918 | 836..935 | 500 | 100 | Plus |
CG3576-PB | 1203 | Lag1-RB | 819..918 | 836..935 | 500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
schlank-RB | 2487 | CG3576-RB | 636..1555 | 15..935 | 4580 | 99.9 | Plus |
schlank-RA | 2201 | CG3576-RA | 350..1269 | 15..935 | 4580 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6258897..6259237 | 883..542 | 1660 | 99.7 | Minus |
X | 23542271 | X | 6259312..6259535 | 544..321 | 1120 | 100 | Minus |
X | 23542271 | X | 6266407..6266593 | 201..15 | 935 | 100 | Minus |
X | 23542271 | X | 6259604..6259725 | 322..201 | 610 | 100 | Minus |
X | 23542271 | X | 6258743..6258796 | 935..882 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:16:34 has no hits.
BS04229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:11 Download gff for
BS04229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lag1-PB | 1..918 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:57 Download gff for
BS04229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3576-PB | 1..918 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:28 Download gff for
BS04229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
schlank-RA | 345..1269 | 9..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:28:46 Download gff for
BS04229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
schlank-RA | 345..1269 | 9..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:28:46 Download gff for
BS04229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6258897..6259234 | 545..883 | 99 | <- | Minus |
X | 6259312..6259533 | 323..544 | 100 | <- | Minus |
X | 6259604..6259724 | 202..322 | 100 | <- | Minus |
X | 6266407..6266598 | 9..201 | 98 | | Minus |
X | 6258743..6258794 | 884..935 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:28 Download gff for
BS04229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6152930..6153267 | 545..883 | 99 | <- | Minus |
arm_X | 6152776..6152827 | 884..935 | 100 | <- | Minus |
arm_X | 6153345..6153566 | 323..544 | 100 | <- | Minus |
arm_X | 6153637..6153757 | 202..322 | 100 | <- | Minus |
arm_X | 6160440..6160631 | 9..201 | 98 | | Minus |
BS04229.complete Sequence
1235 bp (1235 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634885
> BS04229.complete
GAAGTTATCAGTCGACATGGACATATTGAATGAGTTCAGCAATGTATTCT
GGAGTACGCACATTTGGCTGCCGCCGAACACAACCTGGGCGGACATTGCG
CCCGGCTCGCGTCCAGATGTGGTGCACGCCAACTACAAGGACCTCATATG
GCCCATTCCATTCGCCGCTGTTGTCATGCTGGTCCGCTACACGCTGGAGC
GTTTCTGGATATCGCCCGTAGGCAAATCACTTGGCATACGTAGTTCTAGG
CCTAAGAAAGCGGCAAATGTTCCTATTCTGGAGAAGACCTATGCCAAATC
GACGCGATTGGACAAGAAAAAGCTGGTTCCGCTGTCCAAGCAGACGGATA
TGAGCGAGCGCGAAATCGAGCGCTGGTGGCGTCTACGCAGGGCCCAGGAT
AAACCGTCAACGCTGGTGAAGTTCTGCGAGAACACGTGGCGTTGCATCTA
CTATCTGTACAGCTTCATCTTTGGCGTGATCGTGCTGTGGGACAAGCCCT
GGTTTTGGGATGTGAAGAGCTGCTGGTACGGCTACCCGCATCAGTCGATC
AGCAATGATATCTGGTGGTACTACATGATTTCGATGTCCTTCTACTGGTC
ACTCACTGGCACCCAGTTCTTCGATGTGAAACGCAAGGACTTCTGGCAGA
TGTTCATCCATCACATGGTCACCCTGCTCCTAATGTCGCTCAGCTGGGTG
TGCAATCTGCATCGCGTCGGTTCGCTCGTCCTAGTCGTTCACGATTGTGC
TGACATCTTCTTGGAGGCCGCCAAACTCACCAAATATGCCAAATATCAGA
AGCTCTGCGATGCAATCTTTGCCATCTTCACAGTGGTGTGGATTGTTACG
CGTCTGGGCTTCTATCCACGCATCATTTATAGCTCATCCGTGGAAGCACC
GCGCATTCTGCCCATGTTCCCAGCCTACTACATCTTCAACTCACTGCTTC
TGATGCTGCTCGTCCTGCACGTCATCTGGACATACATGATCCTCAAGATT
GTTGTCGACTCTCTGCAGAAGGGTCTGATGTCCGGTGACATACGTTCCAG
TGATAGTGAGGATCTCACAGACAGTTCGGGGAATGCACGTCTGACCAATG
GCTCGGCGCGCTCCAAGAACAAGTCGATCAGCAGTGCGCCATCGGATAAA
GGATCTGCCGGAGGAGCAGGATCAAGAGCAGGAGCAAGAGTTGCGACAAC
GGAACGGAGAGAGGAGTAGAAGCTTTCTAGACCAT
BS04229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
schlank-RB | 1203 | CG3576-PB | 1..1203 | 17..1219 | 6015 | 100 | Plus |
schlank-RA | 1203 | CG3576-PA | 1..1203 | 17..1219 | 6015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
schlank-RB | 2487 | CG3576-RB | 636..1840 | 15..1219 | 6025 | 100 | Plus |
schlank-RA | 2201 | CG3576-RA | 350..1554 | 15..1219 | 6025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6258897..6259237 | 882..542 | 1705 | 100 | Minus |
X | 23542271 | X | 6259312..6259535 | 544..321 | 1120 | 100 | Minus |
X | 23542271 | X | 6258315..6258507 | 1219..1027 | 965 | 100 | Minus |
X | 23542271 | X | 6266407..6266593 | 201..15 | 935 | 100 | Minus |
X | 23542271 | X | 6258650..6258796 | 1027..881 | 735 | 100 | Minus |
X | 23542271 | X | 6259604..6259725 | 322..201 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:40:46 has no hits.
BS04229.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:52 Download gff for
BS04229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lag1-RB | 1..1203 | 17..1219 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:15 Download gff for
BS04229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lag1-RB | 630..1839 | 9..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:33 Download gff for
BS04229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
schlank-RA | 352..1554 | 17..1219 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:52 Download gff for
BS04229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lag1-RB | 630..1839 | 9..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:41 Download gff for
BS04229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
schlank-RA | 352..1554 | 17..1219 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:41 Download gff for
BS04229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6259312..6259533 | 323..544 | 100 | <- | Minus |
X | 6259604..6259724 | 202..322 | 100 | <- | Minus |
X | 6266407..6266591 | 17..201 | 100 | | Minus |
X | 6258315..6258506 | 1028..1219 | 100 | <- | Minus |
X | 6258650..6258794 | 883..1027 | 100 | <- | Minus |
X | 6258897..6259234 | 545..882 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:33 Download gff for
BS04229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6152348..6152539 | 1028..1219 | 100 | <- | Minus |
arm_X | 6152683..6152827 | 883..1027 | 100 | <- | Minus |
arm_X | 6152930..6153267 | 545..882 | 100 | <- | Minus |
arm_X | 6153345..6153566 | 323..544 | 100 | <- | Minus |
arm_X | 6153637..6153757 | 202..322 | 100 | <- | Minus |
arm_X | 6160440..6160624 | 17..201 | 100 | | Minus |
BS04229.pep Sequence
Translation from 16 to 1218
> BS04229.pep
MDILNEFSNVFWSTHIWLPPNTTWADIAPGSRPDVVHANYKDLIWPIPFA
AVVMLVRYTLERFWISPVGKSLGIRSSRPKKAANVPILEKTYAKSTRLDK
KKLVPLSKQTDMSEREIERWWRLRRAQDKPSTLVKFCENTWRCIYYLYSF
IFGVIVLWDKPWFWDVKSCWYGYPHQSISNDIWWYYMISMSFYWSLTGTQ
FFDVKRKDFWQMFIHHMVTLLLMSLSWVCNLHRVGSLVLVVHDCADIFLE
AAKLTKYAKYQKLCDAIFAIFTVVWIVTRLGFYPRIIYSSSVEAPRILPM
FPAYYIFNSLLLMLLVLHVIWTYMILKIVVDSLQKGLMSGDIRSSDSEDL
TDSSGNARLTNGSARSKNKSISSAPSDKGSAGGAGSRAGARVATTERREE
*
BS04229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
schlank-PB | 400 | CG3576-PB | 1..400 | 1..400 | 2142 | 100 | Plus |
schlank-PA | 400 | CG3576-PA | 1..400 | 1..400 | 2142 | 100 | Plus |