Clone BS04229 Report

Search the DGRC for BS04229

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:29
Vector:pDNR-Dual
Associated Gene/Transcriptschlank-RA
Protein status:BS04229.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04229.3prime Sequence

839 bp (828 high quality bases) assembled on 2005-12-01

> BS04229.3prime
ATGGTCTAGAAAGCTTCTACTCCTCTCTCCGTTCCGTTGTCGCAACTCTT
GCTCCTGCTCTTGATCCTGCTCCTCCGGCAGATCCTTTATCCGATGGCGC
ACTGCTGATCGACTTGTTCTTGGAGCGCGCCGAGCCATTGGTCAGACGTG
CATTCCCCGAACTGTCTGTGAGATCCTCACTATCACTGGAACGTATGTCA
CCGGACATCAGACCCTTCTGCAGAGAGTCGACAACAATCTTGAGGATCAT
GTATGTCCAGATGACGTGCAGGACGAGCAGCATCAGAAGCAGTGAGTTGA
AGATGTAGTAGGCTGGGAACATGGGCAGAATGCGCGGTGCTTCCACGGAT
GAGCTATAAATGATGCGTGGATAGAAGCCCAGACGCGTAACAATCCACAC
CACTGTGAAGATGGCAAAGATTGCATCGCAGAGCTTCTGATATTTGGCAT
ATTTGGTGAGTTTGGCGGCCTCCAAGAAGATGTCAGCACAATCGTGAACG
ACTAGGACGAGCGAACCGACGCGATGCAGATTGCACACCCAGCTGAGCGA
CATTAGGAGCAGGGTGACCATGTGATGGATGAACATCTGCCAGAAGTCCT
TGCGTTTCACATCGAAGAACTGGGTGCCAGTGAGTGACCAGTAGAAGGAC
ATCGAAATCATGTAGTACCACCAGATATCATTGCTGATCGACTGATGCGG
GTAGCCGTACCAGCAGCTCTTCACATCCCAAAACCAGGGCTTGTCCCACA
GCACGATCACGCCAAAGATGAAGCTGTACAGATAGTAGATGCAACGCCAC
GTGTTCTCGCAGAACTTCACCAGCGTTGACGGTTTATCC

BS04229.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3576-PA 1203 Lag1-RA 381..1203 839..17 4115 100 Minus
CG3576-PB 1203 Lag1-RB 381..1203 839..17 4115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
schlank-RB 2487 CG3576-RB 1018..1840 839..17 4115 100 Minus
schlank-RA 2201 CG3576-RA 732..1554 839..17 4115 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6258897..6259237 354..694 1705 100 Plus
X 23542271 X 6258315..6258507 17..209 965 100 Plus
X 23542271 X 6259312..6259459 692..839 740 100 Plus
X 23542271 X 6258650..6258796 209..355 735 100 Plus
Blast to na_te.dros performed on 2015-01-31 14:39:20 has no hits.

BS04229.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:10 Download gff for BS04229.3prime
Subject Subject Range Query Range Percent Splice Strand
Lag1-PB 381..1203 17..839 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:56 Download gff for BS04229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3576-PB 381..1203 17..839 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:19:57 Download gff for BS04229.3prime
Subject Subject Range Query Range Percent Splice Strand
schlank-RA 732..1554 17..839 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:35 Download gff for BS04229.3prime
Subject Subject Range Query Range Percent Splice Strand
schlank-RA 732..1554 17..839 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:35 Download gff for BS04229.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6258650..6258794 209..353 100 <- Plus
X 6258315..6258506 17..208 100 <- Plus
X 6258897..6259234 354..691 100 <- Plus
X 6259312..6259459 692..839 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:19:57 Download gff for BS04229.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6152683..6152827 209..353 100 <- Plus
arm_X 6152348..6152539 17..208 100 <- Plus
arm_X 6152930..6153267 354..691 100 <- Plus
arm_X 6153345..6153492 692..839 100   Plus

BS04229.5prime Sequence

935 bp (772 high quality bases) assembled on 2005-11-29

> BS04229.5prime
GAAGTTATCAGTCGACATGGACATATTGAATGAGTTCAGCAATGTATTCT
GGAGTACGCACATTTGGCTGCCGCCGAACACAACCTGGGCGGACATTGCG
CCCGGCTCGCGTCCAGATGTGGTGCACGCCAACTACAAGGACCTCATATG
GCCCATTCCATTCGCCGCTGTTGTCATGCTGGTCCGCTACACGCTGGAGC
GTTTCTGGATATCGCCCGTAGGCAAATCACTTGGCATACGTAGTTCTAGG
CCTAAGAAAGCGGCAAATGTTCCTATTCTGGAGAAGACCTATGCCAAATC
GACGCGATTGGACAAGAAAAAGCTGGTTCCGCTGTCCAAGCAGACGGATA
TGAGCGAGCGCGAAATCGAGCGCTGGTGGCGTCTACGCAGGGCCCAGGAT
AAACCGTCAACGCTGGTGAAGTTCTGCGAGAACACGTGGCGTTGCATCTA
CTATCTGTACAGCTTCATCTTTGGCGTGATCGTGCTGTGGGACAAGCCCT
GGTTTTGGGATGTGAAGAGCTGCTGGTACGGCTACCCGCATCAGTCGATC
AGCAATGATATCTGGTGGTACTACATGATTTCGATGTCCTTCTACTGGTC
ACTCACTGGCACCCAGTTCTTCGATGTGAAACGCAAGGACTTCTGGCAGA
TGTTCATCCATCACATGGTCACCCTGCTCCTAATGTCGCTCAGCTGGGTG
TGCAATCTGCATCGCGTCGGTTCGCTCGTCCTAGTCGTTCACGATTGTGC
TGACATCTTCTTGGAGGCCGCCAAACTCACCAAATATGCCAAATATCAGA
AGCTCTGCGATGCAATCTTTGCCATCTTCACAGTGGGTGTGGATTGTTAC
GCGTCTGGGCTTCTATCCACGCATCATTTATAGCTCATCCGTGGAAGCAC
CGCGCATTCTGCCCATGTTCCCAGCCTACTACATC

BS04229.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3576-PA 1203 Lag1-RA 1..820 17..836 4100 100 Plus
CG3576-PB 1203 Lag1-RB 1..820 17..836 4100 100 Plus
CG3576-PA 1203 Lag1-RA 819..918 836..935 500 100 Plus
CG3576-PB 1203 Lag1-RB 819..918 836..935 500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
schlank-RB 2487 CG3576-RB 636..1555 15..935 4580 99.9 Plus
schlank-RA 2201 CG3576-RA 350..1269 15..935 4580 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6258897..6259237 883..542 1660 99.7 Minus
X 23542271 X 6259312..6259535 544..321 1120 100 Minus
X 23542271 X 6266407..6266593 201..15 935 100 Minus
X 23542271 X 6259604..6259725 322..201 610 100 Minus
X 23542271 X 6258743..6258796 935..882 270 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:16:34 has no hits.

BS04229.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:11 Download gff for BS04229.5prime
Subject Subject Range Query Range Percent Splice Strand
Lag1-PB 1..918 17..935 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:57 Download gff for BS04229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3576-PB 1..918 17..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:28 Download gff for BS04229.5prime
Subject Subject Range Query Range Percent Splice Strand
schlank-RA 345..1269 9..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:28:46 Download gff for BS04229.5prime
Subject Subject Range Query Range Percent Splice Strand
schlank-RA 345..1269 9..935 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:28:46 Download gff for BS04229.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6258897..6259234 545..883 99 <- Minus
X 6259312..6259533 323..544 100 <- Minus
X 6259604..6259724 202..322 100 <- Minus
X 6266407..6266598 9..201 98   Minus
X 6258743..6258794 884..935 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:28 Download gff for BS04229.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6152930..6153267 545..883 99 <- Minus
arm_X 6152776..6152827 884..935 100 <- Minus
arm_X 6153345..6153566 323..544 100 <- Minus
arm_X 6153637..6153757 202..322 100 <- Minus
arm_X 6160440..6160631 9..201 98   Minus

BS04229.complete Sequence

1235 bp (1235 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634885

> BS04229.complete
GAAGTTATCAGTCGACATGGACATATTGAATGAGTTCAGCAATGTATTCT
GGAGTACGCACATTTGGCTGCCGCCGAACACAACCTGGGCGGACATTGCG
CCCGGCTCGCGTCCAGATGTGGTGCACGCCAACTACAAGGACCTCATATG
GCCCATTCCATTCGCCGCTGTTGTCATGCTGGTCCGCTACACGCTGGAGC
GTTTCTGGATATCGCCCGTAGGCAAATCACTTGGCATACGTAGTTCTAGG
CCTAAGAAAGCGGCAAATGTTCCTATTCTGGAGAAGACCTATGCCAAATC
GACGCGATTGGACAAGAAAAAGCTGGTTCCGCTGTCCAAGCAGACGGATA
TGAGCGAGCGCGAAATCGAGCGCTGGTGGCGTCTACGCAGGGCCCAGGAT
AAACCGTCAACGCTGGTGAAGTTCTGCGAGAACACGTGGCGTTGCATCTA
CTATCTGTACAGCTTCATCTTTGGCGTGATCGTGCTGTGGGACAAGCCCT
GGTTTTGGGATGTGAAGAGCTGCTGGTACGGCTACCCGCATCAGTCGATC
AGCAATGATATCTGGTGGTACTACATGATTTCGATGTCCTTCTACTGGTC
ACTCACTGGCACCCAGTTCTTCGATGTGAAACGCAAGGACTTCTGGCAGA
TGTTCATCCATCACATGGTCACCCTGCTCCTAATGTCGCTCAGCTGGGTG
TGCAATCTGCATCGCGTCGGTTCGCTCGTCCTAGTCGTTCACGATTGTGC
TGACATCTTCTTGGAGGCCGCCAAACTCACCAAATATGCCAAATATCAGA
AGCTCTGCGATGCAATCTTTGCCATCTTCACAGTGGTGTGGATTGTTACG
CGTCTGGGCTTCTATCCACGCATCATTTATAGCTCATCCGTGGAAGCACC
GCGCATTCTGCCCATGTTCCCAGCCTACTACATCTTCAACTCACTGCTTC
TGATGCTGCTCGTCCTGCACGTCATCTGGACATACATGATCCTCAAGATT
GTTGTCGACTCTCTGCAGAAGGGTCTGATGTCCGGTGACATACGTTCCAG
TGATAGTGAGGATCTCACAGACAGTTCGGGGAATGCACGTCTGACCAATG
GCTCGGCGCGCTCCAAGAACAAGTCGATCAGCAGTGCGCCATCGGATAAA
GGATCTGCCGGAGGAGCAGGATCAAGAGCAGGAGCAAGAGTTGCGACAAC
GGAACGGAGAGAGGAGTAGAAGCTTTCTAGACCAT

BS04229.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
schlank-RB 1203 CG3576-PB 1..1203 17..1219 6015 100 Plus
schlank-RA 1203 CG3576-PA 1..1203 17..1219 6015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
schlank-RB 2487 CG3576-RB 636..1840 15..1219 6025 100 Plus
schlank-RA 2201 CG3576-RA 350..1554 15..1219 6025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6258897..6259237 882..542 1705 100 Minus
X 23542271 X 6259312..6259535 544..321 1120 100 Minus
X 23542271 X 6258315..6258507 1219..1027 965 100 Minus
X 23542271 X 6266407..6266593 201..15 935 100 Minus
X 23542271 X 6258650..6258796 1027..881 735 100 Minus
X 23542271 X 6259604..6259725 322..201 610 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:40:46 has no hits.

BS04229.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:52 Download gff for BS04229.complete
Subject Subject Range Query Range Percent Splice Strand
Lag1-RB 1..1203 17..1219 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:15 Download gff for BS04229.complete
Subject Subject Range Query Range Percent Splice Strand
Lag1-RB 630..1839 9..1219 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:33 Download gff for BS04229.complete
Subject Subject Range Query Range Percent Splice Strand
schlank-RA 352..1554 17..1219 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:52 Download gff for BS04229.complete
Subject Subject Range Query Range Percent Splice Strand
Lag1-RB 630..1839 9..1219 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:41 Download gff for BS04229.complete
Subject Subject Range Query Range Percent Splice Strand
schlank-RA 352..1554 17..1219 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:41 Download gff for BS04229.complete
Subject Subject Range Query Range Percent Splice Strand
X 6259312..6259533 323..544 100 <- Minus
X 6259604..6259724 202..322 100 <- Minus
X 6266407..6266591 17..201 100   Minus
X 6258315..6258506 1028..1219 100 <- Minus
X 6258650..6258794 883..1027 100 <- Minus
X 6258897..6259234 545..882 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:33 Download gff for BS04229.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6152348..6152539 1028..1219 100 <- Minus
arm_X 6152683..6152827 883..1027 100 <- Minus
arm_X 6152930..6153267 545..882 100 <- Minus
arm_X 6153345..6153566 323..544 100 <- Minus
arm_X 6153637..6153757 202..322 100 <- Minus
arm_X 6160440..6160624 17..201 100   Minus

BS04229.pep Sequence

Translation from 16 to 1218

> BS04229.pep
MDILNEFSNVFWSTHIWLPPNTTWADIAPGSRPDVVHANYKDLIWPIPFA
AVVMLVRYTLERFWISPVGKSLGIRSSRPKKAANVPILEKTYAKSTRLDK
KKLVPLSKQTDMSEREIERWWRLRRAQDKPSTLVKFCENTWRCIYYLYSF
IFGVIVLWDKPWFWDVKSCWYGYPHQSISNDIWWYYMISMSFYWSLTGTQ
FFDVKRKDFWQMFIHHMVTLLLMSLSWVCNLHRVGSLVLVVHDCADIFLE
AAKLTKYAKYQKLCDAIFAIFTVVWIVTRLGFYPRIIYSSSVEAPRILPM
FPAYYIFNSLLLMLLVLHVIWTYMILKIVVDSLQKGLMSGDIRSSDSEDL
TDSSGNARLTNGSARSKNKSISSAPSDKGSAGGAGSRAGARVATTERREE
*

BS04229.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
schlank-PB 400 CG3576-PB 1..400 1..400 2142 100 Plus
schlank-PA 400 CG3576-PA 1..400 1..400 2142 100 Plus