Clone BS04230 Report

Search the DGRC for BS04230

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptArp2-RA
Protein status:BS04230.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04230.3prime Sequence

956 bp (777 high quality bases) assembled on 2005-12-01

> BS04230.3prime
ATGGTCTAGAAAGCTTCTAGTGACTGATCTTTTGCAGCTTTTGCAATACT
TTGAGACCCTGTTCCTGATACTCCTGCTTGGACATCCAGAAGCCGTCGCG
ATCCTTTGTCACCTCCGCCAGAACAGCTCCGCCGATAAAGACCATATCCT
TGCGTCGCGGTGGATCCTCAATGCGTATTTTGAATTTCGCCAGCTTTTCC
GTATCGTTCTTGAGTACCCGCTCCAGGTACAGCTGTTTGATCTCACGCTC
CAGCCGACTGGGAAGACCCGGATACATGGTGGAGCCGCCGGACAGAACTA
TGTGCTTGTAGAGTTCGGGCCGTATGTCGATGTCTGCCGCCTGGATGGTG
TTGAAGGCCAGTTCCGCAATGCCCGGTCCCTCGACGTTGATCAAATGCGG
CTGGAACAGAGCCTCTGGCGCCTCAAATCTCTCGCCACCGACCTTGATAA
CACGACCGTCGGGTAGCGTGTACGATTCCACCAGCACCGTCGTCTCCAGG
GCCAAACGCTGCTCCATCTCGATGTCGTAGCCAATGTAGCAGAGCTTCTC
CTTCATTATGCGAACCGTTTCGAAGTCGGCGGAATGATTGAAAGCGTAGC
CACGTAGTAACAGTAACTTAATCAAATAGCGAGTGATATCCCGACCGGCA
ATGTCCAATCGTCGCGTCAGATGGGGCAGGGCAAACTCCTCGTAGACGGG
ACATATATGCGTTACACCATCGCCCGAATCGATCACCACGCCAGAGATCA
GACCCTGGGCATATAGCGTCAGCACGGCCTGGATGGCAATGTACGCCGAA
TCGAAGCCATATTTCTCGAACATCACCTCAATCATCTTCTCGCGATTCTT
TGTGGGATTCATGGGCGGCTCGGTTAGCAGGATTTTTGTGTTCGTCGGAT
CGATGTCCATCTTTTTGGGACCGAACGTGTAGTCCCACACGTGGCACATG
TCGTCC

BS04230.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9901-PA 1185 Arp14D-RA 246..1185 956..17 4700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Arp2-RC 2217 CG9901-RC 821..1761 956..16 4705 100 Minus
Arp2-RB 2475 CG9901-RB 584..1524 956..16 4705 100 Minus
Arp2-RA 2219 CG9901-RA 823..1763 956..16 4705 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16549478..16549908 188..618 2155 100 Plus
X 23542271 X 16549977..16550188 617..828 1060 100 Plus
X 23542271 X 16549241..16549413 16..188 865 100 Plus
X 23542271 X 16550246..16550379 823..956 670 100 Plus
Blast to na_te.dros performed 2015-02-11 10:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 1215..1270 750..805 127 69.6 Plus

BS04230.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:12 Download gff for BS04230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9901-PA 246..1185 17..956 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:59 Download gff for BS04230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9901-PA 246..1185 17..956 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:08 Download gff for BS04230.3prime
Subject Subject Range Query Range Percent Splice Strand
Arp2-RA 823..1766 13..956 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:11 Download gff for BS04230.3prime
Subject Subject Range Query Range Percent Splice Strand
Arp2-RA 823..1766 13..956 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:11 Download gff for BS04230.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16549977..16550186 617..826 100 <- Plus
X 16550250..16550379 827..956 100   Plus
X 16549238..16549412 13..187 99 <- Plus
X 16549478..16549906 188..616 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:08 Download gff for BS04230.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16443271..16443445 13..187 99 <- Plus
arm_X 16443511..16443939 188..616 100 <- Plus
arm_X 16444010..16444219 617..826 100 <- Plus
arm_X 16444283..16444412 827..956 100   Plus

BS04230.5prime Sequence

917 bp (783 high quality bases) assembled on 2005-11-29

> BS04230.5prime
GAAGTTATCAGTCGACATGGACAGCAAGGGTCGAAATGTTATCGTCTGTG
ATAACGGCACTGGGTTCGTTAAGTGCGGATATGCCGGCAGCAATTTCCCC
ACCCACATTTTTCCCTCGATGGTGGGACGACCCATGATTCGGGCGGTCAA
CAAAATCGGCGATATCGAAGTCAAGGATCTGATGGTCGGCGATGAGGCCT
CACAGCTGCGATCCCTGCTGGAGGTCTCCTATCCGATGGAGAACGGTGTG
GTGCGCAACTGGGACGACATGTGCCACGTGTGGGACTACACGTTCGGTCC
CAAAAAGATGGACATCGATCCGACGAACACAAAAATCCTGCTAACCGAGC
CGCCCATGAATCCCACAAAGAATCGCGAGAAGATGATTGAGGTGATGTTC
GAGAAATATGGCTTCGATTCGGCGTACATTGCCATCCAGGCCGTGCTGAC
GCTATATGCCCAGGGTCTGATCTCTGGCGTGGTGATCGATTCGGGCGATG
GTGTAACGCATATATGTCCCGTCTACGAGGAGTTTGCCCTGCCCCATCTG
ACGCGACGATTGGACATTGCCGGTCGGGATATCACTCGCTATTTGATTAA
GTTACTGTTACTACGTGGCTACGCTTTCAATCATTCCGCCGACTTCGAAA
CGGTTCGCATAATGAAGGAGAAGCTCTGCTACATTGGCTACGACATCGAG
ATGGAGCAGCGTTTGGCCCTGGAGACGACGGTGCTGGTGGAATCGTACAC
GCTACCCGACGGTCGTGTTATCAAGGTCGGTGGCGAGAGATTTGAGGCGC
CAGAGGCTCTGTTCCAGCCGCATTTGATCAACGTCGAGGGACCGGGCATT
GCGGAACTGGCCTTCACACCATCCAGGCGGCAGAATCGACATACGGCCCG
AACTCTACAAGCACATA

BS04230.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9901-PA 1185 Arp14D-RA 1..850 17..866 4250 100 Plus
CG9901-PA 1185 Arp14D-RA 871..903 885..917 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
Arp2-RB 2475 CG9901-RB 338..1241 16..917 4470 99.8 Plus
Arp2-RA 2219 CG9901-RA 577..1480 16..917 4470 99.8 Plus
Arp2-RC 2217 CG9901-RC 560..1478 16..917 4310 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16549589..16549908 917..600 1500 99.4 Minus
X 23542271 X 16550246..16550467 395..174 1110 100 Minus
X 23542271 X 16549977..16550188 601..390 1060 100 Minus
X 23542271 X 16552339..16552451 176..64 565 100 Minus
X 23542271 X 16553344..16553392 64..16 245 100 Minus
Blast to na_te.dros performed 2015-02-11 17:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 1215..1270 468..413 127 69.6 Minus

BS04230.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:13 Download gff for BS04230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9901-PA 1..902 17..916 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:00 Download gff for BS04230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9901-PA 1..902 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:28:03 Download gff for BS04230.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp2-RA 568..1479 8..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:26 Download gff for BS04230.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp2-RA 568..1479 8..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:26 Download gff for BS04230.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16549590..16549906 602..916 99 <- Minus
X 16549977..16550186 392..601 100 <- Minus
X 16550250..16550465 176..391 100 <- Minus
X 16552340..16552450 65..175 100 <- Minus
X 16553344..16553397 8..64 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:28:03 Download gff for BS04230.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16443623..16443939 602..916 99 <- Minus
arm_X 16444010..16444219 392..601 100 <- Minus
arm_X 16444283..16444498 176..391 100 <- Minus
arm_X 16446373..16446483 65..175 100 <- Minus
arm_X 16447377..16447430 8..64 92   Minus

BS04230.complete Sequence

1217 bp (1217 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634886

> BS04230.complete
GAAGTTATCAGTCGACATGGACAGCAAGGGTCGAAATGTTATCGTCTGTG
ATAACGGCACTGGGTTCGTTAAGTGCGGATATGCCGGCAGCAATTTCCCC
ACCCACATTTTTCCCTCGATGGTGGGACGACCCATGATTCGGGCGGTCAA
CAAAATCGGCGATATCGAAGTCAAGGATCTGATGGTCGGCGATGAGGCCT
CACAGCTGCGATCCCTGCTGGAGGTCTCCTATCCGATGGAGAACGGTGTG
GTGCGCAACTGGGACGACATGTGCCACGTGTGGGACTACACGTTCGGTCC
CAAAAAGATGGACATCGATCCGACGAACACAAAAATCCTGCTAACCGAGC
CGCCCATGAATCCCACAAAGAATCGCGAGAAGATGATTGAGGTGATGTTC
GAGAAATATGGCTTCGATTCGGCGTACATTGCCATCCAGGCCGTGCTGAC
GCTATATGCCCAGGGTCTGATCTCTGGCGTGGTGATCGATTCGGGCGATG
GTGTAACGCATATATGTCCCGTCTACGAGGAGTTTGCCCTGCCCCATCTG
ACGCGACGATTGGACATTGCCGGTCGGGATATCACTCGCTATTTGATTAA
GTTACTGTTACTACGTGGCTACGCTTTCAATCATTCCGCCGACTTCGAAA
CGGTTCGCATAATGAAGGAGAAGCTCTGCTACATTGGCTACGACATCGAG
ATGGAGCAGCGTTTGGCCCTGGAGACGACGGTGCTGGTGGAATCGTACAC
GCTACCCGACGGTCGTGTTATCAAGGTCGGTGGCGAGAGATTTGAGGCGC
CAGAGGCTCTGTTCCAGCCGCATTTGATCAACGTCGAGGGACCGGGCATT
GCGGAACTGGCCTTCAACACCATCCAGGCGGCAGACATCGACATACGGCC
CGAACTCTACAAGCACATAGTTCTGTCCGGCGGCTCCACCATGTATCCGG
GTCTTCCCAGTCGGCTGGAGCGTGAGATCAAACAGCTGTACCTGGAGCGG
GTACTCAAGAACGATACGGAAAAGCTGGCGAAATTCAAAATACGCATTGA
GGATCCACCGCGACGCAAGGATATGGTCTTTATCGGCGGAGCTGTTCTGG
CGGAGGTGACAAAGGATCGCGACGGCTTCTGGATGTCCAAGCAGGAGTAT
CAGGAACAGGGTCTCAAAGTATTGCAAAAGCTGCAAAAGATCAGTCACTA
GAAGCTTTCTAGACCAT

BS04230.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
Arp2-RB 1185 CG9901-PB 1..1185 17..1201 5925 100 Plus
Arp2-RA 1185 CG9901-PA 1..1185 17..1201 5925 100 Plus
Arp2-RC 1200 CG9901-PC 1..1200 17..1201 5740 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
Arp2-RB 2475 CG9901-RB 338..1524 16..1202 5935 100 Plus
Arp2-RA 2219 CG9901-RA 577..1763 16..1202 5935 100 Plus
Arp2-RC 2217 CG9901-RC 560..1761 16..1202 5750 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16549478..16549908 1030..600 2155 100 Minus
X 23542271 X 16550246..16550467 395..174 1110 100 Minus
X 23542271 X 16549977..16550188 601..390 1060 100 Minus
X 23542271 X 16549241..16549413 1202..1030 865 100 Minus
X 23542271 X 16552339..16552451 176..64 565 100 Minus
X 23542271 X 16553344..16553392 64..16 245 100 Minus
Blast to na_te.dros performed 2014-11-27 16:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 1215..1270 468..413 127 69.6 Minus

BS04230.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:53 Download gff for BS04230.complete
Subject Subject Range Query Range Percent Splice Strand
Arp14D-RB 1..1185 17..1201 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:17 Download gff for BS04230.complete
Subject Subject Range Query Range Percent Splice Strand
Arp14D-RB 324..1522 8..1205 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:22 Download gff for BS04230.complete
Subject Subject Range Query Range Percent Splice Strand
Arp2-RA 578..1762 17..1201 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:53 Download gff for BS04230.complete
Subject Subject Range Query Range Percent Splice Strand
Arp14D-RB 324..1522 8..1205 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:54 Download gff for BS04230.complete
Subject Subject Range Query Range Percent Splice Strand
Arp2-RA 578..1762 17..1201 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:54 Download gff for BS04230.complete
Subject Subject Range Query Range Percent Splice Strand
X 16550250..16550465 176..391 100 <- Minus
X 16552340..16552450 65..175 100 <- Minus
X 16553344..16553391 17..64 100   Minus
X 16549242..16549412 1031..1201 100 <- Minus
X 16549478..16549906 602..1030 100 <- Minus
X 16549977..16550186 392..601 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:22 Download gff for BS04230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16443275..16443445 1031..1201 100 <- Minus
arm_X 16443511..16443939 602..1030 100 <- Minus
arm_X 16444010..16444219 392..601 100 <- Minus
arm_X 16444283..16444498 176..391 100 <- Minus
arm_X 16446373..16446483 65..175 100 <- Minus
arm_X 16447377..16447424 17..64 100   Minus

BS04230.pep Sequence

Translation from 16 to 1200

> BS04230.pep
MDSKGRNVIVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDI
EVKDLMVGDEASQLRSLLEVSYPMENGVVRNWDDMCHVWDYTFGPKKMDI
DPTNTKILLTEPPMNPTKNREKMIEVMFEKYGFDSAYIAIQAVLTLYAQG
LISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLLLLR
GYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESYTLPDGR
VIKVGGERFEAPEALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKH
IVLSGGSTMYPGLPSRLEREIKQLYLERVLKNDTEKLAKFKIRIEDPPRR
KDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQKLQKISH*

BS04230.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
Arp2-PB 394 CG9901-PB 1..394 1..394 2053 100 Plus
Arp2-PA 394 CG9901-PA 1..394 1..394 2053 100 Plus
Arp2-PC 399 CG9901-PC 1..399 1..394 2037 98.7 Plus
Act88F-PA 376 CG5178-PA 9..373 9..388 919 47.6 Plus
Act87E-PC 376 CG18290-PC 9..373 9..388 917 47.1 Plus