Clone Sequence Records
BS04230.3prime Sequence
956 bp (777 high quality bases) assembled on 2005-12-01
> BS04230.3prime
ATGGTCTAGAAAGCTTCTAGTGACTGATCTTTTGCAGCTTTTGCAATACT
TTGAGACCCTGTTCCTGATACTCCTGCTTGGACATCCAGAAGCCGTCGCG
ATCCTTTGTCACCTCCGCCAGAACAGCTCCGCCGATAAAGACCATATCCT
TGCGTCGCGGTGGATCCTCAATGCGTATTTTGAATTTCGCCAGCTTTTCC
GTATCGTTCTTGAGTACCCGCTCCAGGTACAGCTGTTTGATCTCACGCTC
CAGCCGACTGGGAAGACCCGGATACATGGTGGAGCCGCCGGACAGAACTA
TGTGCTTGTAGAGTTCGGGCCGTATGTCGATGTCTGCCGCCTGGATGGTG
TTGAAGGCCAGTTCCGCAATGCCCGGTCCCTCGACGTTGATCAAATGCGG
CTGGAACAGAGCCTCTGGCGCCTCAAATCTCTCGCCACCGACCTTGATAA
CACGACCGTCGGGTAGCGTGTACGATTCCACCAGCACCGTCGTCTCCAGG
GCCAAACGCTGCTCCATCTCGATGTCGTAGCCAATGTAGCAGAGCTTCTC
CTTCATTATGCGAACCGTTTCGAAGTCGGCGGAATGATTGAAAGCGTAGC
CACGTAGTAACAGTAACTTAATCAAATAGCGAGTGATATCCCGACCGGCA
ATGTCCAATCGTCGCGTCAGATGGGGCAGGGCAAACTCCTCGTAGACGGG
ACATATATGCGTTACACCATCGCCCGAATCGATCACCACGCCAGAGATCA
GACCCTGGGCATATAGCGTCAGCACGGCCTGGATGGCAATGTACGCCGAA
TCGAAGCCATATTTCTCGAACATCACCTCAATCATCTTCTCGCGATTCTT
TGTGGGATTCATGGGCGGCTCGGTTAGCAGGATTTTTGTGTTCGTCGGAT
CGATGTCCATCTTTTTGGGACCGAACGTGTAGTCCCACACGTGGCACATG
TCGTCC
BS04230.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9901-PA | 1185 | Arp14D-RA | 246..1185 | 956..17 | 4700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp2-RC | 2217 | CG9901-RC | 821..1761 | 956..16 | 4705 | 100 | Minus |
Arp2-RB | 2475 | CG9901-RB | 584..1524 | 956..16 | 4705 | 100 | Minus |
Arp2-RA | 2219 | CG9901-RA | 823..1763 | 956..16 | 4705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16549478..16549908 | 188..618 | 2155 | 100 | Plus |
X | 23542271 | X | 16549977..16550188 | 617..828 | 1060 | 100 | Plus |
X | 23542271 | X | 16549241..16549413 | 16..188 | 865 | 100 | Plus |
X | 23542271 | X | 16550246..16550379 | 823..956 | 670 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 10:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 1215..1270 | 750..805 | 127 | 69.6 | Plus |
BS04230.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:12 Download gff for
BS04230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9901-PA | 246..1185 | 17..956 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:59 Download gff for
BS04230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9901-PA | 246..1185 | 17..956 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:08 Download gff for
BS04230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp2-RA | 823..1766 | 13..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:11 Download gff for
BS04230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp2-RA | 823..1766 | 13..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:11 Download gff for
BS04230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16549977..16550186 | 617..826 | 100 | <- | Plus |
X | 16550250..16550379 | 827..956 | 100 | | Plus |
X | 16549238..16549412 | 13..187 | 99 | <- | Plus |
X | 16549478..16549906 | 188..616 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:08 Download gff for
BS04230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16443271..16443445 | 13..187 | 99 | <- | Plus |
arm_X | 16443511..16443939 | 188..616 | 100 | <- | Plus |
arm_X | 16444010..16444219 | 617..826 | 100 | <- | Plus |
arm_X | 16444283..16444412 | 827..956 | 100 | | Plus |
BS04230.5prime Sequence
917 bp (783 high quality bases) assembled on 2005-11-29
> BS04230.5prime
GAAGTTATCAGTCGACATGGACAGCAAGGGTCGAAATGTTATCGTCTGTG
ATAACGGCACTGGGTTCGTTAAGTGCGGATATGCCGGCAGCAATTTCCCC
ACCCACATTTTTCCCTCGATGGTGGGACGACCCATGATTCGGGCGGTCAA
CAAAATCGGCGATATCGAAGTCAAGGATCTGATGGTCGGCGATGAGGCCT
CACAGCTGCGATCCCTGCTGGAGGTCTCCTATCCGATGGAGAACGGTGTG
GTGCGCAACTGGGACGACATGTGCCACGTGTGGGACTACACGTTCGGTCC
CAAAAAGATGGACATCGATCCGACGAACACAAAAATCCTGCTAACCGAGC
CGCCCATGAATCCCACAAAGAATCGCGAGAAGATGATTGAGGTGATGTTC
GAGAAATATGGCTTCGATTCGGCGTACATTGCCATCCAGGCCGTGCTGAC
GCTATATGCCCAGGGTCTGATCTCTGGCGTGGTGATCGATTCGGGCGATG
GTGTAACGCATATATGTCCCGTCTACGAGGAGTTTGCCCTGCCCCATCTG
ACGCGACGATTGGACATTGCCGGTCGGGATATCACTCGCTATTTGATTAA
GTTACTGTTACTACGTGGCTACGCTTTCAATCATTCCGCCGACTTCGAAA
CGGTTCGCATAATGAAGGAGAAGCTCTGCTACATTGGCTACGACATCGAG
ATGGAGCAGCGTTTGGCCCTGGAGACGACGGTGCTGGTGGAATCGTACAC
GCTACCCGACGGTCGTGTTATCAAGGTCGGTGGCGAGAGATTTGAGGCGC
CAGAGGCTCTGTTCCAGCCGCATTTGATCAACGTCGAGGGACCGGGCATT
GCGGAACTGGCCTTCACACCATCCAGGCGGCAGAATCGACATACGGCCCG
AACTCTACAAGCACATA
BS04230.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9901-PA | 1185 | Arp14D-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
CG9901-PA | 1185 | Arp14D-RA | 871..903 | 885..917 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp2-RB | 2475 | CG9901-RB | 338..1241 | 16..917 | 4470 | 99.8 | Plus |
Arp2-RA | 2219 | CG9901-RA | 577..1480 | 16..917 | 4470 | 99.8 | Plus |
Arp2-RC | 2217 | CG9901-RC | 560..1478 | 16..917 | 4310 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16549589..16549908 | 917..600 | 1500 | 99.4 | Minus |
X | 23542271 | X | 16550246..16550467 | 395..174 | 1110 | 100 | Minus |
X | 23542271 | X | 16549977..16550188 | 601..390 | 1060 | 100 | Minus |
X | 23542271 | X | 16552339..16552451 | 176..64 | 565 | 100 | Minus |
X | 23542271 | X | 16553344..16553392 | 64..16 | 245 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 1215..1270 | 468..413 | 127 | 69.6 | Minus |
BS04230.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:13 Download gff for
BS04230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9901-PA | 1..902 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:00 Download gff for
BS04230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9901-PA | 1..902 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:28:03 Download gff for
BS04230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp2-RA | 568..1479 | 8..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:26 Download gff for
BS04230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp2-RA | 568..1479 | 8..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:26 Download gff for
BS04230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16549590..16549906 | 602..916 | 99 | <- | Minus |
X | 16549977..16550186 | 392..601 | 100 | <- | Minus |
X | 16550250..16550465 | 176..391 | 100 | <- | Minus |
X | 16552340..16552450 | 65..175 | 100 | <- | Minus |
X | 16553344..16553397 | 8..64 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:28:03 Download gff for
BS04230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16443623..16443939 | 602..916 | 99 | <- | Minus |
arm_X | 16444010..16444219 | 392..601 | 100 | <- | Minus |
arm_X | 16444283..16444498 | 176..391 | 100 | <- | Minus |
arm_X | 16446373..16446483 | 65..175 | 100 | <- | Minus |
arm_X | 16447377..16447430 | 8..64 | 92 | | Minus |
BS04230.complete Sequence
1217 bp (1217 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634886
> BS04230.complete
GAAGTTATCAGTCGACATGGACAGCAAGGGTCGAAATGTTATCGTCTGTG
ATAACGGCACTGGGTTCGTTAAGTGCGGATATGCCGGCAGCAATTTCCCC
ACCCACATTTTTCCCTCGATGGTGGGACGACCCATGATTCGGGCGGTCAA
CAAAATCGGCGATATCGAAGTCAAGGATCTGATGGTCGGCGATGAGGCCT
CACAGCTGCGATCCCTGCTGGAGGTCTCCTATCCGATGGAGAACGGTGTG
GTGCGCAACTGGGACGACATGTGCCACGTGTGGGACTACACGTTCGGTCC
CAAAAAGATGGACATCGATCCGACGAACACAAAAATCCTGCTAACCGAGC
CGCCCATGAATCCCACAAAGAATCGCGAGAAGATGATTGAGGTGATGTTC
GAGAAATATGGCTTCGATTCGGCGTACATTGCCATCCAGGCCGTGCTGAC
GCTATATGCCCAGGGTCTGATCTCTGGCGTGGTGATCGATTCGGGCGATG
GTGTAACGCATATATGTCCCGTCTACGAGGAGTTTGCCCTGCCCCATCTG
ACGCGACGATTGGACATTGCCGGTCGGGATATCACTCGCTATTTGATTAA
GTTACTGTTACTACGTGGCTACGCTTTCAATCATTCCGCCGACTTCGAAA
CGGTTCGCATAATGAAGGAGAAGCTCTGCTACATTGGCTACGACATCGAG
ATGGAGCAGCGTTTGGCCCTGGAGACGACGGTGCTGGTGGAATCGTACAC
GCTACCCGACGGTCGTGTTATCAAGGTCGGTGGCGAGAGATTTGAGGCGC
CAGAGGCTCTGTTCCAGCCGCATTTGATCAACGTCGAGGGACCGGGCATT
GCGGAACTGGCCTTCAACACCATCCAGGCGGCAGACATCGACATACGGCC
CGAACTCTACAAGCACATAGTTCTGTCCGGCGGCTCCACCATGTATCCGG
GTCTTCCCAGTCGGCTGGAGCGTGAGATCAAACAGCTGTACCTGGAGCGG
GTACTCAAGAACGATACGGAAAAGCTGGCGAAATTCAAAATACGCATTGA
GGATCCACCGCGACGCAAGGATATGGTCTTTATCGGCGGAGCTGTTCTGG
CGGAGGTGACAAAGGATCGCGACGGCTTCTGGATGTCCAAGCAGGAGTAT
CAGGAACAGGGTCTCAAAGTATTGCAAAAGCTGCAAAAGATCAGTCACTA
GAAGCTTTCTAGACCAT
BS04230.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp2-RB | 1185 | CG9901-PB | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Arp2-RA | 1185 | CG9901-PA | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Arp2-RC | 1200 | CG9901-PC | 1..1200 | 17..1201 | 5740 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp2-RB | 2475 | CG9901-RB | 338..1524 | 16..1202 | 5935 | 100 | Plus |
Arp2-RA | 2219 | CG9901-RA | 577..1763 | 16..1202 | 5935 | 100 | Plus |
Arp2-RC | 2217 | CG9901-RC | 560..1761 | 16..1202 | 5750 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16549478..16549908 | 1030..600 | 2155 | 100 | Minus |
X | 23542271 | X | 16550246..16550467 | 395..174 | 1110 | 100 | Minus |
X | 23542271 | X | 16549977..16550188 | 601..390 | 1060 | 100 | Minus |
X | 23542271 | X | 16549241..16549413 | 1202..1030 | 865 | 100 | Minus |
X | 23542271 | X | 16552339..16552451 | 176..64 | 565 | 100 | Minus |
X | 23542271 | X | 16553344..16553392 | 64..16 | 245 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 1215..1270 | 468..413 | 127 | 69.6 | Minus |
BS04230.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:53 Download gff for
BS04230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp14D-RB | 1..1185 | 17..1201 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:17 Download gff for
BS04230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp14D-RB | 324..1522 | 8..1205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:22 Download gff for
BS04230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp2-RA | 578..1762 | 17..1201 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:53 Download gff for
BS04230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp14D-RB | 324..1522 | 8..1205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:54 Download gff for
BS04230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp2-RA | 578..1762 | 17..1201 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:54 Download gff for
BS04230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16550250..16550465 | 176..391 | 100 | <- | Minus |
X | 16552340..16552450 | 65..175 | 100 | <- | Minus |
X | 16553344..16553391 | 17..64 | 100 | | Minus |
X | 16549242..16549412 | 1031..1201 | 100 | <- | Minus |
X | 16549478..16549906 | 602..1030 | 100 | <- | Minus |
X | 16549977..16550186 | 392..601 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:22 Download gff for
BS04230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16443275..16443445 | 1031..1201 | 100 | <- | Minus |
arm_X | 16443511..16443939 | 602..1030 | 100 | <- | Minus |
arm_X | 16444010..16444219 | 392..601 | 100 | <- | Minus |
arm_X | 16444283..16444498 | 176..391 | 100 | <- | Minus |
arm_X | 16446373..16446483 | 65..175 | 100 | <- | Minus |
arm_X | 16447377..16447424 | 17..64 | 100 | | Minus |
BS04230.pep Sequence
Translation from 16 to 1200
> BS04230.pep
MDSKGRNVIVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDI
EVKDLMVGDEASQLRSLLEVSYPMENGVVRNWDDMCHVWDYTFGPKKMDI
DPTNTKILLTEPPMNPTKNREKMIEVMFEKYGFDSAYIAIQAVLTLYAQG
LISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLLLLR
GYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESYTLPDGR
VIKVGGERFEAPEALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKH
IVLSGGSTMYPGLPSRLEREIKQLYLERVLKNDTEKLAKFKIRIEDPPRR
KDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQKLQKISH*
BS04230.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp2-PB | 394 | CG9901-PB | 1..394 | 1..394 | 2053 | 100 | Plus |
Arp2-PA | 394 | CG9901-PA | 1..394 | 1..394 | 2053 | 100 | Plus |
Arp2-PC | 399 | CG9901-PC | 1..399 | 1..394 | 2037 | 98.7 | Plus |
Act88F-PA | 376 | CG5178-PA | 9..373 | 9..388 | 919 | 47.6 | Plus |
Act87E-PC | 376 | CG18290-PC | 9..373 | 9..388 | 917 | 47.1 | Plus |