Clone Sequence Records
BS04234.3prime Sequence
938 bp (830 high quality bases) assembled on 2005-12-01
> BS04234.3prime
ATGGTCTAGAAAGCTTTCAAAGCATTTGAACAAATACAAGGCTGAGCAGT
GATCCCACAGCCATGCCACAGCTCAAAGCAGCTGCCATTATCGACGAAGC
CAGCTCCTTTTCATGCTGCTTTACGCGTTTAGGCGCCATTATAAGTAGTA
TGTTCGTAAAATATCCGTTGGACAAGGCAAACATTACCATCATCGCTATG
AAAGTATAGTCGTGTTTTACCAAAACTGGCAGAAAGCTGTGTTCGCTGGA
GTTTGAACATAGAAATAACGGAACAAACGCCATGCGCACTACAATAAATA
GTAGCGAAGTGTTCTGGTTTAATGGTCGCTCCATCCAGCCAGCAAACAGA
CGACCAAAATAGTCACCGCAGTTAAATATCAGGTAGTTCACGACGGGCAG
AAAATAAACATCTGTCCACACGCTGTGGCCGTACTCTGACTGCATAAGCA
CTGTAACTGCCGGATAGACAGACAGGGTCGTGGTATAGAGGAGCGCTAGG
GAAATGGCATGCAGATAGATCTTCGACATGACCTGACGCAAAATAGGCTC
AAGCGGCAAGCCCTCAGCGCTTCCATTCCGGTTGTGCGAGGGCACTGCCC
GGATGACCTTGTACTTGTCGCCACCTTCGAGATAATACCTAAAGAAAGGC
TTTCGAGCCAGGATTACGTAGCACACAATGCAAAGCAGGATGAGCACTCC
TCCCACAATGAAGAAGATGAATGCAGTGGTATTGGGACCCGTGTCGAATG
CAAGCACAAGAATGAAGGCCAGGGCTGTGAGGATACCACCAAGAGCCTGT
CCGCTAACCACAGCGGTGATAAACTCGGAGGGAAATAGACCAGCGACTCC
GTAGAGGGCTCCCGACATTGTAGCCGCAGATATATTTAGCAGCACTACAA
TGATGAGAGTGATTAGGAAAAACTGGTCCTGCCACGTG
BS04234.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11907-PA | 1431 | Ent1-RA | 510..1431 | 938..17 | 4585 | 99.8 | Minus |
CG11907-PB | 1431 | Ent1-RB | 510..1431 | 938..17 | 4585 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ent1-RC | 1905 | CG11907-RC | 631..1553 | 938..16 | 4600 | 99.9 | Minus |
Ent1-RB | 1923 | CG11907-RB | 649..1571 | 938..16 | 4600 | 99.9 | Minus |
Ent1-RA | 1972 | CG11907-RA | 698..1620 | 938..16 | 4600 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 356367..356837 | 412..882 | 2355 | 100 | Plus |
2L | 23513712 | 2L | 355917..356316 | 16..415 | 2000 | 100 | Plus |
2L | 23513712 | 2L | 356891..356946 | 883..938 | 265 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:38:31 has no hits.
BS04234.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:18 Download gff for
BS04234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ent1-PB | 510..1431 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:07 Download gff for
BS04234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11907-PB | 510..1431 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:23 Download gff for
BS04234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ent1-RA | 698..1620 | 16..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:39 Download gff for
BS04234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ent1-RA | 698..1620 | 16..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:39 Download gff for
BS04234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 355917..356312 | 16..411 | 100 | <- | Plus |
2L | 356367..356837 | 412..882 | 100 | <- | Plus |
2L | 356891..356946 | 883..938 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:23 Download gff for
BS04234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 355917..356312 | 16..411 | 100 | <- | Plus |
arm_2L | 356367..356837 | 412..882 | 100 | <- | Plus |
arm_2L | 356891..356946 | 883..938 | 98 | | Plus |
BS04234.5prime Sequence
887 bp (817 high quality bases) assembled on 2005-11-29
> BS04234.5prime
GAAGTTATCAGTCGACATGCCAGGCACCAGTGACACACGACGACTGGTGG
ACGCCCTGGACGAGGATGACGAGATTCTGGGCACGGAGGGCAGCTTCGTT
CCCGCTTTTCGTCCGCAGGACCACCATGCGGATGAGCAATGTCTCATGGA
ACGCCAGCAGGACGAGGTAGTTTTGGTGTCCAACGAACCCGAGAGTGGAC
GACTCTTCACCTACCTCGTGTTCTACCTGTTGGGCATTGGTACCATGACC
CCGTGGAATTTCTTTGTGACTGCGGAAGATTACTGGAAGTACAAGTTCCG
GAATGCATCGATTAATAACACAGACCTGGAGGAAGAGCTCACCCCGTTGC
AGAAGAGTTTTACCTGCGACTTGGCTCTCACGGCCACTATTTCTGGGACT
ACATTTCTGCTGCTAAACGCCATTTTCGGACACCATGTGTCCCTGCGCAC
CAAGATGTTAGGAACGCTGTGGATGATCCTCATCCTTTTCGGGGTTACAA
CTGGCTTCGTGGAGATCAACACAGACACGTGGCAGGAACAGTTTTTCCTA
ATCACTCTCATCATTGTAGTGCTGCTAAATATATCTGCGGCTACAATGTC
GGGAGCCCTCTACGGAGTCGCTGGTCTATTTCCCTCCGAGTTTATCACCG
CTGTGGTTAGCGGACAGGCTCTTGGTGGTATCCTCACAGCCCTGGCCTTC
ATTCTTGTGCTTGCATTCGACACGGGTCCCAATACCACTGCATTCATCTT
CTTCATTGTGGGAGGAGTGCTCATCCTGCTTTGCATTGTGTGCTACGTAA
TCCTGGCTCGAAAGCCTTTCTTTAGGTATTATCTCGAAGGTGGCGACAAG
TACAAGGTCATCCGGGCAGTGCCCTCGCACAACCGGA
BS04234.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11907-PA | 1431 | Ent1-RA | 1..871 | 17..887 | 4355 | 100 | Plus |
CG11907-PB | 1431 | Ent1-RB | 1..871 | 17..887 | 4355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ent1-RC | 1905 | CG11907-RC | 122..992 | 17..887 | 4355 | 100 | Plus |
Ent1-RB | 1923 | CG11907-RB | 140..1010 | 17..887 | 4355 | 100 | Plus |
Ent1-RA | 1972 | CG11907-RA | 189..1059 | 17..887 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 356532..356837 | 887..582 | 1530 | 100 | Minus |
2L | 23513712 | 2L | 356891..357191 | 581..281 | 1505 | 100 | Minus |
2L | 23513712 | 2L | 357423..357686 | 280..17 | 1320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:52:16 has no hits.
BS04234.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:19 Download gff for
BS04234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ent1-PB | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:08 Download gff for
BS04234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11907-PB | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:21:32 Download gff for
BS04234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ent1-RA | 180..1058 | 8..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:57 Download gff for
BS04234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ent1-RA | 180..1058 | 8..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:57 Download gff for
BS04234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 356533..356837 | 582..886 | 100 | <- | Minus |
2L | 356891..357191 | 281..581 | 100 | <- | Minus |
2L | 357423..357695 | 8..280 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:21:32 Download gff for
BS04234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 356533..356837 | 582..886 | 100 | <- | Minus |
arm_2L | 356891..357191 | 281..581 | 100 | <- | Minus |
arm_2L | 357423..357695 | 8..280 | 98 | | Minus |
BS04234.complete Sequence
1463 bp (1463 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634887
> BS04234.complete
GAAGTTATCAGTCGACATGCCAGGCACCAGTGACACACGACGACTGGTGG
ACGCCCTGGACGAGGATGACGAGATTCTGGGCACGGAGGGCAGCTTCGTT
CCCGCTTTTCGTCCGCAGGACCACCATGCGGATGAGCAATGTCTCATGGA
ACGCCAGCAGGACGAGGTAGTTTTGGTGTCCAACGAACCCGAGAGTGGAC
GACTCTTCACCTACCTCGTGTTCTACCTGTTGGGCATTGGTACCATGACC
CCGTGGAATTTCTTTGTGACTGCGGAAGATTACTGGAAGTACAAGTTCCG
GAATGCATCGATTAATAACACAGACCTGGAGGAAGAGCTCACCCCGTTGC
AGAAGAGTTTTACCTGCGACTTGGCTCTCACGGCCACTATTTCTGGGACT
ACATTTCTGCTGCTAAACGCCATTTTCGGACACCATGTGTCCCTGCGCAC
CAAGATGTTAGGAACGCTGTGGATGATCCTCATCCTTTTCGGGGTTACAA
CTGGCTTCGTGGAGATCAACACAGACACGTGGCAGGAACAGTTTTTCCTA
ATCACTCTCATCATTGTAGTGCTGCTAAATATATCTGCGGCTACAATGTC
GGGAGCCCTCTACGGAGTCGCTGGTCTATTTCCCTCCGAGTTTATCACCG
CTGTGGTTAGCGGACAGGCTCTTGGTGGTATCCTCACAGCCCTGGCCTTC
ATTCTTGTGCTTGCATTCGACACGGGTCCCAATACCACTGCATTCATCTT
CTTCATTGTGGGAGGAGTGCTCATCCTGCTTTGCATTGTGTGCTACGTAA
TCCTGGCTCGAAAGCCTTTCTTTAGGTATTATCTCGAAGGTGGCGACAAG
TACAAGGTCATCCGGGCAGTGCCCTCGCACAACCGGAATGGAAGCGCTGA
GGGCTTGCCGCTTGAGCCTATTTTGCGTCAGGTCATGTCGAAGATCTATC
TGCATGCCATTTCCCTAGCGCTCCTCTATACCACGACCCTGTCTGTCTAT
CCGGCAGTTACAGTGCTTATGCAGTCAGAGTACGGCCACAGCGTGTGGAC
AGATGTTTATTTTCTGCCCGTCGTGAACTACCTGATATTTAACTGCGGTG
ACTATTTTGGTCGTCTGTTTGCTGGCTGGATGGAGCGACCATTAAACCAG
AACACTTCGCTACTATTTATTGTAGTGCGCATGGCGTTTGTTCCGTTATT
TCTATGTTCAAACTCCAGCGAACACAGCTTTCTGCCAGTTTTGGTAAAAC
ACGACTATACTTTCATAGCGATGATGGTAATGTTTGCCTTGTCCAACGGA
TATTTTACGAACATACTACTTATAATGGCGCCTAAACGCGTAAAGCAGCA
TGAAAAGGAGCTGGCTTCGTCGATAATGGCAGCTGCTTTGAGCTGTGGCA
TGGCTGTGGGATCACTGCTCAGCCTTGTATTTGTTCAAATGCTTTGAAAG
CTTTCTAGACCAT
BS04234.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ent1-RC | 1431 | CG11907-PC | 1..1431 | 17..1447 | 7155 | 100 | Plus |
Ent1-RB | 1431 | CG11907-PB | 1..1431 | 17..1447 | 7155 | 100 | Plus |
Ent1-RA | 1431 | CG11907-PA | 1..1431 | 17..1447 | 7155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ent1-RC | 1905 | CG11907-RC | 122..1553 | 17..1448 | 7160 | 100 | Plus |
Ent1-RB | 1923 | CG11907-RB | 140..1571 | 17..1448 | 7160 | 100 | Plus |
Ent1-RA | 1972 | CG11907-RA | 189..1620 | 17..1448 | 7160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 356367..356837 | 1052..582 | 2355 | 100 | Minus |
2L | 23513712 | 2L | 355917..356316 | 1448..1049 | 2000 | 100 | Minus |
2L | 23513712 | 2L | 356891..357191 | 581..281 | 1505 | 100 | Minus |
2L | 23513712 | 2L | 357423..357686 | 280..17 | 1320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:57:24 has no hits.
BS04234.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:54 Download gff for
BS04234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ent1-RB | 1..1431 | 17..1447 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:19 Download gff for
BS04234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ent1-RB | 125..1565 | 8..1448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:21 Download gff for
BS04234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ent1-RA | 189..1618 | 17..1446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:55 Download gff for
BS04234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ent1-RB | 125..1565 | 8..1448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:36 Download gff for
BS04234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ent1-RA | 189..1618 | 17..1446 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:36 Download gff for
BS04234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 355919..356312 | 1053..1446 | 100 | <- | Minus |
2L | 356367..356837 | 582..1052 | 100 | <- | Minus |
2L | 356891..357191 | 281..581 | 100 | <- | Minus |
2L | 357423..357686 | 17..280 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:21 Download gff for
BS04234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 355919..356312 | 1053..1446 | 100 | <- | Minus |
arm_2L | 356367..356837 | 582..1052 | 100 | <- | Minus |
arm_2L | 356891..357191 | 281..581 | 100 | <- | Minus |
arm_2L | 357423..357686 | 17..280 | 100 | | Minus |
BS04234.pep Sequence
Translation from 16 to 1446
> BS04234.pep
MPGTSDTRRLVDALDEDDEILGTEGSFVPAFRPQDHHADEQCLMERQQDE
VVLVSNEPESGRLFTYLVFYLLGIGTMTPWNFFVTAEDYWKYKFRNASIN
NTDLEEELTPLQKSFTCDLALTATISGTTFLLLNAIFGHHVSLRTKMLGT
LWMILILFGVTTGFVEINTDTWQEQFFLITLIIVVLLNISAATMSGALYG
VAGLFPSEFITAVVSGQALGGILTALAFILVLAFDTGPNTTAFIFFIVGG
VLILLCIVCYVILARKPFFRYYLEGGDKYKVIRAVPSHNRNGSAEGLPLE
PILRQVMSKIYLHAISLALLYTTTLSVYPAVTVLMQSEYGHSVWTDVYFL
PVVNYLIFNCGDYFGRLFAGWMERPLNQNTSLLFIVVRMAFVPLFLCSNS
SEHSFLPVLVKHDYTFIAMMVMFALSNGYFTNILLIMAPKRVKQHEKELA
SSIMAAALSCGMAVGSLLSLVFVQML*
BS04234.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ent1-PC | 476 | CG11907-PC | 1..476 | 1..476 | 2447 | 100 | Plus |
Ent1-PB | 476 | CG11907-PB | 1..476 | 1..476 | 2447 | 100 | Plus |
Ent1-PA | 476 | CG11907-PA | 1..476 | 1..476 | 2447 | 100 | Plus |
Ent2-PA | 458 | CG31911-PA | 51..450 | 58..469 | 372 | 25.2 | Plus |
Ent2-PB | 458 | CG31911-PB | 51..450 | 58..469 | 372 | 25.2 | Plus |