Clone BS04234 Report

Search the DGRC for BS04234

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptEnt1-RA
Protein status:BS04234.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04234.3prime Sequence

938 bp (830 high quality bases) assembled on 2005-12-01

> BS04234.3prime
ATGGTCTAGAAAGCTTTCAAAGCATTTGAACAAATACAAGGCTGAGCAGT
GATCCCACAGCCATGCCACAGCTCAAAGCAGCTGCCATTATCGACGAAGC
CAGCTCCTTTTCATGCTGCTTTACGCGTTTAGGCGCCATTATAAGTAGTA
TGTTCGTAAAATATCCGTTGGACAAGGCAAACATTACCATCATCGCTATG
AAAGTATAGTCGTGTTTTACCAAAACTGGCAGAAAGCTGTGTTCGCTGGA
GTTTGAACATAGAAATAACGGAACAAACGCCATGCGCACTACAATAAATA
GTAGCGAAGTGTTCTGGTTTAATGGTCGCTCCATCCAGCCAGCAAACAGA
CGACCAAAATAGTCACCGCAGTTAAATATCAGGTAGTTCACGACGGGCAG
AAAATAAACATCTGTCCACACGCTGTGGCCGTACTCTGACTGCATAAGCA
CTGTAACTGCCGGATAGACAGACAGGGTCGTGGTATAGAGGAGCGCTAGG
GAAATGGCATGCAGATAGATCTTCGACATGACCTGACGCAAAATAGGCTC
AAGCGGCAAGCCCTCAGCGCTTCCATTCCGGTTGTGCGAGGGCACTGCCC
GGATGACCTTGTACTTGTCGCCACCTTCGAGATAATACCTAAAGAAAGGC
TTTCGAGCCAGGATTACGTAGCACACAATGCAAAGCAGGATGAGCACTCC
TCCCACAATGAAGAAGATGAATGCAGTGGTATTGGGACCCGTGTCGAATG
CAAGCACAAGAATGAAGGCCAGGGCTGTGAGGATACCACCAAGAGCCTGT
CCGCTAACCACAGCGGTGATAAACTCGGAGGGAAATAGACCAGCGACTCC
GTAGAGGGCTCCCGACATTGTAGCCGCAGATATATTTAGCAGCACTACAA
TGATGAGAGTGATTAGGAAAAACTGGTCCTGCCACGTG

BS04234.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11907-PA 1431 Ent1-RA 510..1431 938..17 4585 99.8 Minus
CG11907-PB 1431 Ent1-RB 510..1431 938..17 4585 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Ent1-RC 1905 CG11907-RC 631..1553 938..16 4600 99.9 Minus
Ent1-RB 1923 CG11907-RB 649..1571 938..16 4600 99.9 Minus
Ent1-RA 1972 CG11907-RA 698..1620 938..16 4600 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 356367..356837 412..882 2355 100 Plus
2L 23513712 2L 355917..356316 16..415 2000 100 Plus
2L 23513712 2L 356891..356946 883..938 265 98.2 Plus
Blast to na_te.dros performed on 2015-02-11 10:38:31 has no hits.

BS04234.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:18 Download gff for BS04234.3prime
Subject Subject Range Query Range Percent Splice Strand
Ent1-PB 510..1431 17..938 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:07 Download gff for BS04234.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11907-PB 510..1431 17..938 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:23 Download gff for BS04234.3prime
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 698..1620 16..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:39 Download gff for BS04234.3prime
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 698..1620 16..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:39 Download gff for BS04234.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 355917..356312 16..411 100 <- Plus
2L 356367..356837 412..882 100 <- Plus
2L 356891..356946 883..938 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:23 Download gff for BS04234.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 355917..356312 16..411 100 <- Plus
arm_2L 356367..356837 412..882 100 <- Plus
arm_2L 356891..356946 883..938 98   Plus

BS04234.5prime Sequence

887 bp (817 high quality bases) assembled on 2005-11-29

> BS04234.5prime
GAAGTTATCAGTCGACATGCCAGGCACCAGTGACACACGACGACTGGTGG
ACGCCCTGGACGAGGATGACGAGATTCTGGGCACGGAGGGCAGCTTCGTT
CCCGCTTTTCGTCCGCAGGACCACCATGCGGATGAGCAATGTCTCATGGA
ACGCCAGCAGGACGAGGTAGTTTTGGTGTCCAACGAACCCGAGAGTGGAC
GACTCTTCACCTACCTCGTGTTCTACCTGTTGGGCATTGGTACCATGACC
CCGTGGAATTTCTTTGTGACTGCGGAAGATTACTGGAAGTACAAGTTCCG
GAATGCATCGATTAATAACACAGACCTGGAGGAAGAGCTCACCCCGTTGC
AGAAGAGTTTTACCTGCGACTTGGCTCTCACGGCCACTATTTCTGGGACT
ACATTTCTGCTGCTAAACGCCATTTTCGGACACCATGTGTCCCTGCGCAC
CAAGATGTTAGGAACGCTGTGGATGATCCTCATCCTTTTCGGGGTTACAA
CTGGCTTCGTGGAGATCAACACAGACACGTGGCAGGAACAGTTTTTCCTA
ATCACTCTCATCATTGTAGTGCTGCTAAATATATCTGCGGCTACAATGTC
GGGAGCCCTCTACGGAGTCGCTGGTCTATTTCCCTCCGAGTTTATCACCG
CTGTGGTTAGCGGACAGGCTCTTGGTGGTATCCTCACAGCCCTGGCCTTC
ATTCTTGTGCTTGCATTCGACACGGGTCCCAATACCACTGCATTCATCTT
CTTCATTGTGGGAGGAGTGCTCATCCTGCTTTGCATTGTGTGCTACGTAA
TCCTGGCTCGAAAGCCTTTCTTTAGGTATTATCTCGAAGGTGGCGACAAG
TACAAGGTCATCCGGGCAGTGCCCTCGCACAACCGGA

BS04234.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11907-PA 1431 Ent1-RA 1..871 17..887 4355 100 Plus
CG11907-PB 1431 Ent1-RB 1..871 17..887 4355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ent1-RC 1905 CG11907-RC 122..992 17..887 4355 100 Plus
Ent1-RB 1923 CG11907-RB 140..1010 17..887 4355 100 Plus
Ent1-RA 1972 CG11907-RA 189..1059 17..887 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 356532..356837 887..582 1530 100 Minus
2L 23513712 2L 356891..357191 581..281 1505 100 Minus
2L 23513712 2L 357423..357686 280..17 1320 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:52:16 has no hits.

BS04234.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:19 Download gff for BS04234.5prime
Subject Subject Range Query Range Percent Splice Strand
Ent1-PB 1..870 17..886 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:08 Download gff for BS04234.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11907-PB 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:21:32 Download gff for BS04234.5prime
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 180..1058 8..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:57 Download gff for BS04234.5prime
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 180..1058 8..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:57 Download gff for BS04234.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 356533..356837 582..886 100 <- Minus
2L 356891..357191 281..581 100 <- Minus
2L 357423..357695 8..280 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:21:32 Download gff for BS04234.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 356533..356837 582..886 100 <- Minus
arm_2L 356891..357191 281..581 100 <- Minus
arm_2L 357423..357695 8..280 98   Minus

BS04234.complete Sequence

1463 bp (1463 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634887

> BS04234.complete
GAAGTTATCAGTCGACATGCCAGGCACCAGTGACACACGACGACTGGTGG
ACGCCCTGGACGAGGATGACGAGATTCTGGGCACGGAGGGCAGCTTCGTT
CCCGCTTTTCGTCCGCAGGACCACCATGCGGATGAGCAATGTCTCATGGA
ACGCCAGCAGGACGAGGTAGTTTTGGTGTCCAACGAACCCGAGAGTGGAC
GACTCTTCACCTACCTCGTGTTCTACCTGTTGGGCATTGGTACCATGACC
CCGTGGAATTTCTTTGTGACTGCGGAAGATTACTGGAAGTACAAGTTCCG
GAATGCATCGATTAATAACACAGACCTGGAGGAAGAGCTCACCCCGTTGC
AGAAGAGTTTTACCTGCGACTTGGCTCTCACGGCCACTATTTCTGGGACT
ACATTTCTGCTGCTAAACGCCATTTTCGGACACCATGTGTCCCTGCGCAC
CAAGATGTTAGGAACGCTGTGGATGATCCTCATCCTTTTCGGGGTTACAA
CTGGCTTCGTGGAGATCAACACAGACACGTGGCAGGAACAGTTTTTCCTA
ATCACTCTCATCATTGTAGTGCTGCTAAATATATCTGCGGCTACAATGTC
GGGAGCCCTCTACGGAGTCGCTGGTCTATTTCCCTCCGAGTTTATCACCG
CTGTGGTTAGCGGACAGGCTCTTGGTGGTATCCTCACAGCCCTGGCCTTC
ATTCTTGTGCTTGCATTCGACACGGGTCCCAATACCACTGCATTCATCTT
CTTCATTGTGGGAGGAGTGCTCATCCTGCTTTGCATTGTGTGCTACGTAA
TCCTGGCTCGAAAGCCTTTCTTTAGGTATTATCTCGAAGGTGGCGACAAG
TACAAGGTCATCCGGGCAGTGCCCTCGCACAACCGGAATGGAAGCGCTGA
GGGCTTGCCGCTTGAGCCTATTTTGCGTCAGGTCATGTCGAAGATCTATC
TGCATGCCATTTCCCTAGCGCTCCTCTATACCACGACCCTGTCTGTCTAT
CCGGCAGTTACAGTGCTTATGCAGTCAGAGTACGGCCACAGCGTGTGGAC
AGATGTTTATTTTCTGCCCGTCGTGAACTACCTGATATTTAACTGCGGTG
ACTATTTTGGTCGTCTGTTTGCTGGCTGGATGGAGCGACCATTAAACCAG
AACACTTCGCTACTATTTATTGTAGTGCGCATGGCGTTTGTTCCGTTATT
TCTATGTTCAAACTCCAGCGAACACAGCTTTCTGCCAGTTTTGGTAAAAC
ACGACTATACTTTCATAGCGATGATGGTAATGTTTGCCTTGTCCAACGGA
TATTTTACGAACATACTACTTATAATGGCGCCTAAACGCGTAAAGCAGCA
TGAAAAGGAGCTGGCTTCGTCGATAATGGCAGCTGCTTTGAGCTGTGGCA
TGGCTGTGGGATCACTGCTCAGCCTTGTATTTGTTCAAATGCTTTGAAAG
CTTTCTAGACCAT

BS04234.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Ent1-RC 1431 CG11907-PC 1..1431 17..1447 7155 100 Plus
Ent1-RB 1431 CG11907-PB 1..1431 17..1447 7155 100 Plus
Ent1-RA 1431 CG11907-PA 1..1431 17..1447 7155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ent1-RC 1905 CG11907-RC 122..1553 17..1448 7160 100 Plus
Ent1-RB 1923 CG11907-RB 140..1571 17..1448 7160 100 Plus
Ent1-RA 1972 CG11907-RA 189..1620 17..1448 7160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 356367..356837 1052..582 2355 100 Minus
2L 23513712 2L 355917..356316 1448..1049 2000 100 Minus
2L 23513712 2L 356891..357191 581..281 1505 100 Minus
2L 23513712 2L 357423..357686 280..17 1320 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:57:24 has no hits.

BS04234.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:54 Download gff for BS04234.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RB 1..1431 17..1447 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:19 Download gff for BS04234.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RB 125..1565 8..1448 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:21 Download gff for BS04234.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 189..1618 17..1446 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:55 Download gff for BS04234.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RB 125..1565 8..1448 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:36 Download gff for BS04234.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 189..1618 17..1446 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:36 Download gff for BS04234.complete
Subject Subject Range Query Range Percent Splice Strand
2L 355919..356312 1053..1446 100 <- Minus
2L 356367..356837 582..1052 100 <- Minus
2L 356891..357191 281..581 100 <- Minus
2L 357423..357686 17..280 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:21 Download gff for BS04234.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 355919..356312 1053..1446 100 <- Minus
arm_2L 356367..356837 582..1052 100 <- Minus
arm_2L 356891..357191 281..581 100 <- Minus
arm_2L 357423..357686 17..280 100   Minus

BS04234.pep Sequence

Translation from 16 to 1446

> BS04234.pep
MPGTSDTRRLVDALDEDDEILGTEGSFVPAFRPQDHHADEQCLMERQQDE
VVLVSNEPESGRLFTYLVFYLLGIGTMTPWNFFVTAEDYWKYKFRNASIN
NTDLEEELTPLQKSFTCDLALTATISGTTFLLLNAIFGHHVSLRTKMLGT
LWMILILFGVTTGFVEINTDTWQEQFFLITLIIVVLLNISAATMSGALYG
VAGLFPSEFITAVVSGQALGGILTALAFILVLAFDTGPNTTAFIFFIVGG
VLILLCIVCYVILARKPFFRYYLEGGDKYKVIRAVPSHNRNGSAEGLPLE
PILRQVMSKIYLHAISLALLYTTTLSVYPAVTVLMQSEYGHSVWTDVYFL
PVVNYLIFNCGDYFGRLFAGWMERPLNQNTSLLFIVVRMAFVPLFLCSNS
SEHSFLPVLVKHDYTFIAMMVMFALSNGYFTNILLIMAPKRVKQHEKELA
SSIMAAALSCGMAVGSLLSLVFVQML*

BS04234.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
Ent1-PC 476 CG11907-PC 1..476 1..476 2447 100 Plus
Ent1-PB 476 CG11907-PB 1..476 1..476 2447 100 Plus
Ent1-PA 476 CG11907-PA 1..476 1..476 2447 100 Plus
Ent2-PA 458 CG31911-PA 51..450 58..469 372 25.2 Plus
Ent2-PB 458 CG31911-PB 51..450 58..469 372 25.2 Plus