Clone Sequence Records
BS04235.3prime Sequence
942 bp (747 high quality bases) assembled on 2005-12-01
> BS04235.3prime
ATGGTCTAGAAAGCTTCTACTTTCGCAGGGGATCCAAACTCTCCAGCGAG
AAGTCGTCAAGGTTAAGCTGATTTTGCTTGAAAATGTTCGGTCCATTGTT
CAATTCGAAAGGATCCGAACCGAATAGATCTGTGTTGCCATTCAGGCCGT
TGCCCGTTGTCACCGAGTTTAGGCGCCTGGGAGCGGCAATCTTTGGCGGT
GGGGCCAACAATGGCGGCGTTATGTTCAGCTCGCTGGAGAAGCCACTGCT
GTTAATGCTGTTGTTATTGCTCGTTATCAGTAAGCTGCTGTTATTATTTT
GCAGCTTGTGATCATTGTTGTTGGAAAACAAATGCTGACCAAAGCTATTG
GCCGGCTCGAAGCCGAACATATTGCTTATCGCACTGCGACCAGTGCCGCC
GATCTCCTGCGTCTCATCCGCTCGCGGATCGAAATCACTATCGGAATCCG
AGTTCAGCAGCAGCTCGTCCATCTTTTGGCTATTGCTCTTGCCGCCGATG
CTGATCTGGCTGGATAAATTGTTCCTCGGCGGGACAATCGGCAAGAACGA
GCTGGGCGACGCTGAGTGGGTCGACGCTGTGGTGGAATTGGTGTCGATTA
GCAGCTTATCATCATCCAGCTTGCCGTTGCTCAGGGCTTCGCTGGCCACC
TCGATTCCATTCTGGGGTTCTGTGGTGGGCGCTTCCAGGATATCCTTGAT
TCCCAGATTGAAGAGCAGGGCATCTAGCTCGGCCTTTGGCAATTTGGCGG
AAACTTCTCGCAGTCGCTCCTTGTAAACGTTTACGGTTTGTTGCAGATGA
TTAATCTGTTGCTGCGCCTTGCTCAGATTCGTCTTTTCGGTGCTATCCAT
GTACTTTCTGTAGGCCAAATCGAAGGCCTGGCCAATGGTCAGCGTGATAT
CCGAGGCCAATTTGTTTGAAATGAAGACAAAGCACTCGTGGC
BS04235.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11804-PB | 1554 | ced-6-RB | 629..1554 | 942..17 | 4630 | 100 | Minus |
CG11804-PC | 1554 | ced-6-RC | 629..1554 | 942..17 | 4630 | 100 | Minus |
CG11804-PA | 1554 | ced-6-RA | 629..1554 | 942..17 | 4630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ced-6-RD | 2462 | CG11804-RD | 931..1857 | 942..16 | 4635 | 100 | Minus |
ced-6-RA | 2382 | CG11804-RA | 851..1777 | 942..16 | 4635 | 100 | Minus |
ced-6-RC | 2257 | CG11804-RC | 726..1652 | 942..16 | 4635 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9435586..9435994 | 208..616 | 2045 | 100 | Plus |
2R | 25286936 | 2R | 9436051..9436296 | 616..861 | 1230 | 100 | Plus |
2R | 25286936 | 2R | 9435394..9435524 | 77..207 | 655 | 100 | Plus |
2R | 25286936 | 2R | 9436362..9436446 | 858..942 | 425 | 100 | Plus |
2R | 25286936 | 2R | 9435274..9435337 | 16..79 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:01:08 has no hits.
BS04235.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:20 Download gff for
BS04235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ced-6-PA | 629..1554 | 17..942 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:09 Download gff for
BS04235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11804-PA | 629..1554 | 17..942 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:35 Download gff for
BS04235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ced-6-RC | 726..1661 | 7..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:42:56 Download gff for
BS04235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ced-6-RC | 726..1661 | 7..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:42:56 Download gff for
BS04235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9435265..9435334 | 7..76 | 94 | <- | Plus |
2R | 9435394..9435524 | 77..207 | 100 | <- | Plus |
2R | 9435586..9435993 | 208..615 | 100 | <- | Plus |
2R | 9436051..9436292 | 616..857 | 100 | <- | Plus |
2R | 9436362..9436446 | 858..942 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:35 Download gff for
BS04235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5322770..5322839 | 7..76 | 94 | <- | Plus |
arm_2R | 5322899..5323029 | 77..207 | 100 | <- | Plus |
arm_2R | 5323091..5323498 | 208..615 | 100 | <- | Plus |
arm_2R | 5323556..5323797 | 616..857 | 100 | <- | Plus |
arm_2R | 5323867..5323951 | 858..942 | 100 | | Plus |
BS04235.5prime Sequence
828 bp (772 high quality bases) assembled on 2005-11-29
> BS04235.5prime
GAAGTTATCAGTCGACATGCCTTATCAGCCAGCCAACAGCGGCGGGACGT
CTGGTGGCAGCAAGGCGGCAGCCAAGATGGCCCAGCTAAAGTTCTGGAAC
AAGCAGAACAGCAGCAAGCAGCAGCAGCAGGACAAGGACAAGGACGCCGC
CGACGGGGGCAACAACACCAGTGGCGGCGGCACTGGCAGCAACAGCAACG
GGGATGCCAAAAGCGAGGCCAAGAACGGCAAGCGCAACTGGCTGCACACG
CCGGAGCAGCTCATCAGCGGACACGCGGTCTATCTAGTCAAGTTCTTTGG
TAACCTGAGCGTGGATCAGCCCAAAGGGATTGAGGTGGTCAAGGAGGCCA
TTCGGAAGCTGCAGTTTGCCCAGCAGATGAAGAAGGCGGAAACGGGCACC
CAGGAGAAGTTCAAGAAGCTTGAGATCACCATTAGCATCAAGGGCGTGGC
AATCCAGGAGCCGCGCACCCACAAGATCCTCCACCAGTTTCCGCTGTACA
ACATTTCGTATTGTGCGGACGAGAAGGGTGTGAAGAAGTTCTTCAGCTTC
ATTGCCAAGACGGTGAAGACGCAGGACGGCAGCGATCCGACGTCAAATGG
CCATGCAAACGGAAATGGCGATGGTAGTGCCAAAGTCGAGGAGAGCCACG
AGTGCTTTGTCTTCATTTCAAACAAATTGGCCTCGGATATCACGCTGACC
ATTGGCCAGGCCTTCGATTTGGCCTACAGAAAGTACATGGATAGCACCGA
AAAGACGAATCTGAGCAAGGCGCAGCAACAGATTAATCATCTGCAACAAA
CCGTAAACGTTTACAAGGAGCGACTGCG
BS04235.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11804-PB | 1554 | ced-6-RB | 1..812 | 17..828 | 4060 | 100 | Plus |
CG11804-PC | 1554 | ced-6-RC | 1..812 | 17..828 | 4060 | 100 | Plus |
CG11804-PA | 1554 | ced-6-RA | 1..812 | 17..828 | 4060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ced-6-RF | 2563 | CG11804-RF | 413..1224 | 17..828 | 4060 | 100 | Plus |
ced-6-RD | 2462 | CG11804-RD | 303..1114 | 17..828 | 4060 | 100 | Plus |
ced-6-RA | 2382 | CG11804-RA | 223..1034 | 17..828 | 4060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9436362..9436800 | 729..291 | 2195 | 100 | Minus |
2R | 25286936 | 2R | 9437420..9437695 | 292..17 | 1380 | 100 | Minus |
2R | 25286936 | 2R | 9436194..9436296 | 828..726 | 515 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 11:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6789..6893 | 98..199 | 184 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6905 | 94..274 | 174 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2427 | 116..238 | 158 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1471..1598 | 90..214 | 145 | 61.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1024..1148 | 116..238 | 116 | 57.1 | Plus |
BS04235.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:21 Download gff for
BS04235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ced-6-PA | 1..812 | 17..828 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:10 Download gff for
BS04235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11804-PA | 1..812 | 17..828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:21:29 Download gff for
BS04235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ced-6-RA | 216..1034 | 9..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:30 Download gff for
BS04235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ced-6-RA | 216..1034 | 9..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:30 Download gff for
BS04235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9437420..9437700 | 9..292 | 98 | | Minus |
2R | 9436194..9436292 | 730..828 | 100 | <- | Minus |
2R | 9436362..9436798 | 293..729 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:21:29 Download gff for
BS04235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5323699..5323797 | 730..828 | 100 | <- | Minus |
arm_2R | 5323867..5324303 | 293..729 | 100 | <- | Minus |
arm_2R | 5324925..5325205 | 9..292 | 98 | | Minus |
BS04235.complete Sequence
1586 bp (1586 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634888
> BS04235.complete
GAAGTTATCAGTCGACATGCCTTATCAGCCAGCCAACAGCGGCGGGACGT
CTGGTGGCAGCAAGGCGGCAGCCAAGATGGCCCAGCTAAAGTTCTGGAAC
AAGCAGAACAGCAGCAAGCAGCAGCAGCAGGACAAGGACAAGGACGCCGC
CGACGGGGGCAACAACACCAGTGGCGGCGGCACTGGCAGCAACAGCAACG
GGGATGCCAAAAGCGAGGCCAAGAACGGCAAGCGCAACTGGCTGCACACG
CCGGAGCAGCTCATCAGCGGACACGCGGTCTATCTAGTCAAGTTCTTTGG
TAACCTGAGCGTGGATCAGCCCAAAGGGATTGAGGTGGTCAAGGAGGCCA
TTCGGAAGCTGCAGTTTGCCCAGCAGATGAAGAAGGCGGAAACGGGCACC
CAGGAGAAGTTCAAGAAGCTTGAGATCACCATTAGCATCAAGGGCGTGGC
AATCCAGGAGCCGCGCACCCACAAGATCCTCCACCAGTTTCCGCTGTACA
ACATTTCGTATTGTGCGGACGAGAAGGGTGTGAAGAAGTTCTTCAGCTTC
ATTGCCAAGACGGTGAAGACGCAGGACGGCAGCGATCCGACGTCAAATGG
CCATGCAAACGGAAATGGCGATGGTAGTGCCAAAGTCGAGGAGAGCCACG
AGTGCTTTGTCTTCATTTCAAACAAATTGGCCTCGGATATCACGCTGACC
ATTGGCCAGGCCTTCGATTTGGCCTACAGAAAGTACATGGATAGCACCGA
AAAGACGAATCTGAGCAAGGCGCAGCAACAGATTAATCATCTGCAACAAA
CCGTAAACGTTTACAAGGAGCGACTGCGAGAAGTTTCCGCCAAATTGCCA
AAGGCCGAGCTAGATGCCCTGCTCTTCAATCTGGGAATCAAGGATATCCT
GGAAGCGCCCACCACAGAACCCCAGAATGGAATCGAGGTGGCCAGCGAAG
CCCTGAGCAACGGCAAGCTGGATGATGATAAGCTGCTAATCGACACCAAT
TCCACCACAGCGTCGACCCACTCAGCGTCGCCCAGCTCGTTCTTGCCGAT
TGTCCCGCCGAGGAACAATTTATCCAGCCAGATCAGCATCGGCGGCAAGA
GCAATAGCCAAAAGATGGACGAGCTGCTGCTGAACTCGGATTCCGATAGT
GATTTCGATCCGCGAGCGGATGAGACGCAGGAGATCGGCGGCACTGGTCG
CAGTGCGATAAGCAATATGTTCGGCTTCGAGCCGGCCAATAGCTTTGGTC
AGCATTTGTTTTCCAACAACAATGATCACAAGCTGCAAAATAATAACAGC
AGCTTACTGATAACGAGCAATAACAACAGCATTAACAGCAGTGGCTTCTC
CAGCGAGCTGAACATAACGCCGCCATTGTTGGCCCCACCGCCAAAGATTG
CCGCTCCCAGGCGCCTAAACTCGGTGACAACGGGCAACGGCCTGAATGGC
AACACAGATCTATTCGGTTCGGATCCTTTCGAATTGAACAATGGACCGAA
CATTTTCAAGCAAAATCAGCTTAACCTTGACGACTTCTCGCTGGAGAGTT
TGGATCCCCTGCGAAAGTAGAAGCTTTCTAGACCAT
BS04235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:35:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ced-6-RD | 1602 | CG11804-PD | 49..1602 | 17..1570 | 7770 | 100 | Plus |
ced-6-RA | 1554 | CG11804-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
ced-6-RC | 1554 | CG11804-PC | 1..1554 | 17..1570 | 7770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ced-6-RD | 2462 | CG11804-RD | 303..1857 | 17..1571 | 7775 | 100 | Plus |
ced-6-RA | 2382 | CG11804-RA | 223..1777 | 17..1571 | 7775 | 100 | Plus |
ced-6-RC | 2257 | CG11804-RC | 98..1652 | 17..1571 | 7775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9436362..9436800 | 729..291 | 2195 | 100 | Minus |
2R | 25286936 | 2R | 9435586..9435994 | 1379..971 | 2045 | 100 | Minus |
2R | 25286936 | 2R | 9437420..9437695 | 292..17 | 1380 | 100 | Minus |
2R | 25286936 | 2R | 9436051..9436296 | 971..726 | 1230 | 100 | Minus |
2R | 25286936 | 2R | 9435394..9435524 | 1510..1380 | 655 | 100 | Minus |
2R | 25286936 | 2R | 9435274..9435337 | 1571..1508 | 320 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6789..6893 | 98..199 | 184 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6905 | 94..274 | 174 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2427 | 116..238 | 158 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1471..1598 | 90..214 | 145 | 61.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1024..1148 | 116..238 | 116 | 57.1 | Plus |
BS04235.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:58 Download gff for
BS04235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ced-6-RA | 1..1554 | 17..1570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:22 Download gff for
BS04235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ced-6-RA | 125..1695 | 9..1580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:51 Download gff for
BS04235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ced-6-RC | 98..1651 | 17..1570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:58 Download gff for
BS04235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ced-6-RA | 125..1695 | 9..1580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:20 Download gff for
BS04235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ced-6-RC | 98..1651 | 17..1570 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:20 Download gff for
BS04235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9435394..9435524 | 1380..1510 | 100 | <- | Minus |
2R | 9435275..9435334 | 1511..1570 | 100 | <- | Minus |
2R | 9435586..9435993 | 972..1379 | 100 | <- | Minus |
2R | 9436051..9436292 | 730..971 | 100 | <- | Minus |
2R | 9436362..9436798 | 293..729 | 100 | <- | Minus |
2R | 9437420..9437695 | 17..292 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:51 Download gff for
BS04235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5324925..5325200 | 17..292 | 100 | | Minus |
arm_2R | 5322780..5322839 | 1511..1570 | 100 | <- | Minus |
arm_2R | 5322899..5323029 | 1380..1510 | 100 | <- | Minus |
arm_2R | 5323091..5323498 | 972..1379 | 100 | <- | Minus |
arm_2R | 5323556..5323797 | 730..971 | 100 | <- | Minus |
arm_2R | 5323867..5324303 | 293..729 | 100 | <- | Minus |
BS04235.pep Sequence
Translation from 16 to 1569
> BS04235.pep
MPYQPANSGGTSGGSKAAAKMAQLKFWNKQNSSKQQQQDKDKDAADGGNN
TSGGGTGSNSNGDAKSEAKNGKRNWLHTPEQLISGHAVYLVKFFGNLSVD
QPKGIEVVKEAIRKLQFAQQMKKAETGTQEKFKKLEITISIKGVAIQEPR
THKILHQFPLYNISYCADEKGVKKFFSFIAKTVKTQDGSDPTSNGHANGN
GDGSAKVEESHECFVFISNKLASDITLTIGQAFDLAYRKYMDSTEKTNLS
KAQQQINHLQQTVNVYKERLREVSAKLPKAELDALLFNLGIKDILEAPTT
EPQNGIEVASEALSNGKLDDDKLLIDTNSTTASTHSASPSSFLPIVPPRN
NLSSQISIGGKSNSQKMDELLLNSDSDSDFDPRADETQEIGGTGRSAISN
MFGFEPANSFGQHLFSNNNDHKLQNNNSSLLITSNNNSINSSGFSSELNI
TPPLLAPPPKIAAPRRLNSVTTGNGLNGNTDLFGSDPFELNNGPNIFKQN
QLNLDDFSLESLDPLRK*
BS04235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ced-6-PD | 533 | CG11804-PD | 17..533 | 1..517 | 2661 | 100 | Plus |
ced-6-PA | 517 | CG11804-PA | 1..517 | 1..517 | 2661 | 100 | Plus |
ced-6-PC | 517 | CG11804-PC | 1..517 | 1..517 | 2661 | 100 | Plus |
ced-6-PB | 517 | CG11804-PB | 1..517 | 1..517 | 2661 | 100 | Plus |
ced-6-PF | 514 | CG11804-PF | 1..514 | 1..517 | 2631 | 99.4 | Plus |