Clone BS04235 Report

Search the DGRC for BS04235

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptced-6-RA
Protein status:BS04235.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04235.3prime Sequence

942 bp (747 high quality bases) assembled on 2005-12-01

> BS04235.3prime
ATGGTCTAGAAAGCTTCTACTTTCGCAGGGGATCCAAACTCTCCAGCGAG
AAGTCGTCAAGGTTAAGCTGATTTTGCTTGAAAATGTTCGGTCCATTGTT
CAATTCGAAAGGATCCGAACCGAATAGATCTGTGTTGCCATTCAGGCCGT
TGCCCGTTGTCACCGAGTTTAGGCGCCTGGGAGCGGCAATCTTTGGCGGT
GGGGCCAACAATGGCGGCGTTATGTTCAGCTCGCTGGAGAAGCCACTGCT
GTTAATGCTGTTGTTATTGCTCGTTATCAGTAAGCTGCTGTTATTATTTT
GCAGCTTGTGATCATTGTTGTTGGAAAACAAATGCTGACCAAAGCTATTG
GCCGGCTCGAAGCCGAACATATTGCTTATCGCACTGCGACCAGTGCCGCC
GATCTCCTGCGTCTCATCCGCTCGCGGATCGAAATCACTATCGGAATCCG
AGTTCAGCAGCAGCTCGTCCATCTTTTGGCTATTGCTCTTGCCGCCGATG
CTGATCTGGCTGGATAAATTGTTCCTCGGCGGGACAATCGGCAAGAACGA
GCTGGGCGACGCTGAGTGGGTCGACGCTGTGGTGGAATTGGTGTCGATTA
GCAGCTTATCATCATCCAGCTTGCCGTTGCTCAGGGCTTCGCTGGCCACC
TCGATTCCATTCTGGGGTTCTGTGGTGGGCGCTTCCAGGATATCCTTGAT
TCCCAGATTGAAGAGCAGGGCATCTAGCTCGGCCTTTGGCAATTTGGCGG
AAACTTCTCGCAGTCGCTCCTTGTAAACGTTTACGGTTTGTTGCAGATGA
TTAATCTGTTGCTGCGCCTTGCTCAGATTCGTCTTTTCGGTGCTATCCAT
GTACTTTCTGTAGGCCAAATCGAAGGCCTGGCCAATGGTCAGCGTGATAT
CCGAGGCCAATTTGTTTGAAATGAAGACAAAGCACTCGTGGC

BS04235.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11804-PB 1554 ced-6-RB 629..1554 942..17 4630 100 Minus
CG11804-PC 1554 ced-6-RC 629..1554 942..17 4630 100 Minus
CG11804-PA 1554 ced-6-RA 629..1554 942..17 4630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
ced-6-RD 2462 CG11804-RD 931..1857 942..16 4635 100 Minus
ced-6-RA 2382 CG11804-RA 851..1777 942..16 4635 100 Minus
ced-6-RC 2257 CG11804-RC 726..1652 942..16 4635 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9435586..9435994 208..616 2045 100 Plus
2R 25286936 2R 9436051..9436296 616..861 1230 100 Plus
2R 25286936 2R 9435394..9435524 77..207 655 100 Plus
2R 25286936 2R 9436362..9436446 858..942 425 100 Plus
2R 25286936 2R 9435274..9435337 16..79 320 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:01:08 has no hits.

BS04235.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:20 Download gff for BS04235.3prime
Subject Subject Range Query Range Percent Splice Strand
ced-6-PA 629..1554 17..942 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:09 Download gff for BS04235.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11804-PA 629..1554 17..942 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:35 Download gff for BS04235.3prime
Subject Subject Range Query Range Percent Splice Strand
ced-6-RC 726..1661 7..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:42:56 Download gff for BS04235.3prime
Subject Subject Range Query Range Percent Splice Strand
ced-6-RC 726..1661 7..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:42:56 Download gff for BS04235.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9435265..9435334 7..76 94 <- Plus
2R 9435394..9435524 77..207 100 <- Plus
2R 9435586..9435993 208..615 100 <- Plus
2R 9436051..9436292 616..857 100 <- Plus
2R 9436362..9436446 858..942 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:35 Download gff for BS04235.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5322770..5322839 7..76 94 <- Plus
arm_2R 5322899..5323029 77..207 100 <- Plus
arm_2R 5323091..5323498 208..615 100 <- Plus
arm_2R 5323556..5323797 616..857 100 <- Plus
arm_2R 5323867..5323951 858..942 100   Plus

BS04235.5prime Sequence

828 bp (772 high quality bases) assembled on 2005-11-29

> BS04235.5prime
GAAGTTATCAGTCGACATGCCTTATCAGCCAGCCAACAGCGGCGGGACGT
CTGGTGGCAGCAAGGCGGCAGCCAAGATGGCCCAGCTAAAGTTCTGGAAC
AAGCAGAACAGCAGCAAGCAGCAGCAGCAGGACAAGGACAAGGACGCCGC
CGACGGGGGCAACAACACCAGTGGCGGCGGCACTGGCAGCAACAGCAACG
GGGATGCCAAAAGCGAGGCCAAGAACGGCAAGCGCAACTGGCTGCACACG
CCGGAGCAGCTCATCAGCGGACACGCGGTCTATCTAGTCAAGTTCTTTGG
TAACCTGAGCGTGGATCAGCCCAAAGGGATTGAGGTGGTCAAGGAGGCCA
TTCGGAAGCTGCAGTTTGCCCAGCAGATGAAGAAGGCGGAAACGGGCACC
CAGGAGAAGTTCAAGAAGCTTGAGATCACCATTAGCATCAAGGGCGTGGC
AATCCAGGAGCCGCGCACCCACAAGATCCTCCACCAGTTTCCGCTGTACA
ACATTTCGTATTGTGCGGACGAGAAGGGTGTGAAGAAGTTCTTCAGCTTC
ATTGCCAAGACGGTGAAGACGCAGGACGGCAGCGATCCGACGTCAAATGG
CCATGCAAACGGAAATGGCGATGGTAGTGCCAAAGTCGAGGAGAGCCACG
AGTGCTTTGTCTTCATTTCAAACAAATTGGCCTCGGATATCACGCTGACC
ATTGGCCAGGCCTTCGATTTGGCCTACAGAAAGTACATGGATAGCACCGA
AAAGACGAATCTGAGCAAGGCGCAGCAACAGATTAATCATCTGCAACAAA
CCGTAAACGTTTACAAGGAGCGACTGCG

BS04235.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11804-PB 1554 ced-6-RB 1..812 17..828 4060 100 Plus
CG11804-PC 1554 ced-6-RC 1..812 17..828 4060 100 Plus
CG11804-PA 1554 ced-6-RA 1..812 17..828 4060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
ced-6-RF 2563 CG11804-RF 413..1224 17..828 4060 100 Plus
ced-6-RD 2462 CG11804-RD 303..1114 17..828 4060 100 Plus
ced-6-RA 2382 CG11804-RA 223..1034 17..828 4060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9436362..9436800 729..291 2195 100 Minus
2R 25286936 2R 9437420..9437695 292..17 1380 100 Minus
2R 25286936 2R 9436194..9436296 828..726 515 100 Minus
Blast to na_te.dros performed 2015-02-11 11:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6789..6893 98..199 184 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6905 94..274 174 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2427 116..238 158 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1471..1598 90..214 145 61.2 Plus
roo 9092 roo DM_ROO 9092bp 1024..1148 116..238 116 57.1 Plus

BS04235.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:21 Download gff for BS04235.5prime
Subject Subject Range Query Range Percent Splice Strand
ced-6-PA 1..812 17..828 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:10 Download gff for BS04235.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11804-PA 1..812 17..828 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:21:29 Download gff for BS04235.5prime
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 216..1034 9..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:30 Download gff for BS04235.5prime
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 216..1034 9..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:30 Download gff for BS04235.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9437420..9437700 9..292 98   Minus
2R 9436194..9436292 730..828 100 <- Minus
2R 9436362..9436798 293..729 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:21:29 Download gff for BS04235.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5323699..5323797 730..828 100 <- Minus
arm_2R 5323867..5324303 293..729 100 <- Minus
arm_2R 5324925..5325205 9..292 98   Minus

BS04235.complete Sequence

1586 bp (1586 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634888

> BS04235.complete
GAAGTTATCAGTCGACATGCCTTATCAGCCAGCCAACAGCGGCGGGACGT
CTGGTGGCAGCAAGGCGGCAGCCAAGATGGCCCAGCTAAAGTTCTGGAAC
AAGCAGAACAGCAGCAAGCAGCAGCAGCAGGACAAGGACAAGGACGCCGC
CGACGGGGGCAACAACACCAGTGGCGGCGGCACTGGCAGCAACAGCAACG
GGGATGCCAAAAGCGAGGCCAAGAACGGCAAGCGCAACTGGCTGCACACG
CCGGAGCAGCTCATCAGCGGACACGCGGTCTATCTAGTCAAGTTCTTTGG
TAACCTGAGCGTGGATCAGCCCAAAGGGATTGAGGTGGTCAAGGAGGCCA
TTCGGAAGCTGCAGTTTGCCCAGCAGATGAAGAAGGCGGAAACGGGCACC
CAGGAGAAGTTCAAGAAGCTTGAGATCACCATTAGCATCAAGGGCGTGGC
AATCCAGGAGCCGCGCACCCACAAGATCCTCCACCAGTTTCCGCTGTACA
ACATTTCGTATTGTGCGGACGAGAAGGGTGTGAAGAAGTTCTTCAGCTTC
ATTGCCAAGACGGTGAAGACGCAGGACGGCAGCGATCCGACGTCAAATGG
CCATGCAAACGGAAATGGCGATGGTAGTGCCAAAGTCGAGGAGAGCCACG
AGTGCTTTGTCTTCATTTCAAACAAATTGGCCTCGGATATCACGCTGACC
ATTGGCCAGGCCTTCGATTTGGCCTACAGAAAGTACATGGATAGCACCGA
AAAGACGAATCTGAGCAAGGCGCAGCAACAGATTAATCATCTGCAACAAA
CCGTAAACGTTTACAAGGAGCGACTGCGAGAAGTTTCCGCCAAATTGCCA
AAGGCCGAGCTAGATGCCCTGCTCTTCAATCTGGGAATCAAGGATATCCT
GGAAGCGCCCACCACAGAACCCCAGAATGGAATCGAGGTGGCCAGCGAAG
CCCTGAGCAACGGCAAGCTGGATGATGATAAGCTGCTAATCGACACCAAT
TCCACCACAGCGTCGACCCACTCAGCGTCGCCCAGCTCGTTCTTGCCGAT
TGTCCCGCCGAGGAACAATTTATCCAGCCAGATCAGCATCGGCGGCAAGA
GCAATAGCCAAAAGATGGACGAGCTGCTGCTGAACTCGGATTCCGATAGT
GATTTCGATCCGCGAGCGGATGAGACGCAGGAGATCGGCGGCACTGGTCG
CAGTGCGATAAGCAATATGTTCGGCTTCGAGCCGGCCAATAGCTTTGGTC
AGCATTTGTTTTCCAACAACAATGATCACAAGCTGCAAAATAATAACAGC
AGCTTACTGATAACGAGCAATAACAACAGCATTAACAGCAGTGGCTTCTC
CAGCGAGCTGAACATAACGCCGCCATTGTTGGCCCCACCGCCAAAGATTG
CCGCTCCCAGGCGCCTAAACTCGGTGACAACGGGCAACGGCCTGAATGGC
AACACAGATCTATTCGGTTCGGATCCTTTCGAATTGAACAATGGACCGAA
CATTTTCAAGCAAAATCAGCTTAACCTTGACGACTTCTCGCTGGAGAGTT
TGGATCCCCTGCGAAAGTAGAAGCTTTCTAGACCAT

BS04235.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
ced-6-RD 1602 CG11804-PD 49..1602 17..1570 7770 100 Plus
ced-6-RA 1554 CG11804-PA 1..1554 17..1570 7770 100 Plus
ced-6-RC 1554 CG11804-PC 1..1554 17..1570 7770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
ced-6-RD 2462 CG11804-RD 303..1857 17..1571 7775 100 Plus
ced-6-RA 2382 CG11804-RA 223..1777 17..1571 7775 100 Plus
ced-6-RC 2257 CG11804-RC 98..1652 17..1571 7775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9436362..9436800 729..291 2195 100 Minus
2R 25286936 2R 9435586..9435994 1379..971 2045 100 Minus
2R 25286936 2R 9437420..9437695 292..17 1380 100 Minus
2R 25286936 2R 9436051..9436296 971..726 1230 100 Minus
2R 25286936 2R 9435394..9435524 1510..1380 655 100 Minus
2R 25286936 2R 9435274..9435337 1571..1508 320 100 Minus
Blast to na_te.dros performed 2014-11-27 20:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6789..6893 98..199 184 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6905 94..274 174 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2427 116..238 158 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1471..1598 90..214 145 61.2 Plus
roo 9092 roo DM_ROO 9092bp 1024..1148 116..238 116 57.1 Plus

BS04235.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:58 Download gff for BS04235.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 1..1554 17..1570 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:22 Download gff for BS04235.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 125..1695 9..1580 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:51 Download gff for BS04235.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RC 98..1651 17..1570 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:58 Download gff for BS04235.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 125..1695 9..1580 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:20 Download gff for BS04235.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RC 98..1651 17..1570 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:20 Download gff for BS04235.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9435394..9435524 1380..1510 100 <- Minus
2R 9435275..9435334 1511..1570 100 <- Minus
2R 9435586..9435993 972..1379 100 <- Minus
2R 9436051..9436292 730..971 100 <- Minus
2R 9436362..9436798 293..729 100 <- Minus
2R 9437420..9437695 17..292 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:51 Download gff for BS04235.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5324925..5325200 17..292 100   Minus
arm_2R 5322780..5322839 1511..1570 100 <- Minus
arm_2R 5322899..5323029 1380..1510 100 <- Minus
arm_2R 5323091..5323498 972..1379 100 <- Minus
arm_2R 5323556..5323797 730..971 100 <- Minus
arm_2R 5323867..5324303 293..729 100 <- Minus

BS04235.pep Sequence

Translation from 16 to 1569

> BS04235.pep
MPYQPANSGGTSGGSKAAAKMAQLKFWNKQNSSKQQQQDKDKDAADGGNN
TSGGGTGSNSNGDAKSEAKNGKRNWLHTPEQLISGHAVYLVKFFGNLSVD
QPKGIEVVKEAIRKLQFAQQMKKAETGTQEKFKKLEITISIKGVAIQEPR
THKILHQFPLYNISYCADEKGVKKFFSFIAKTVKTQDGSDPTSNGHANGN
GDGSAKVEESHECFVFISNKLASDITLTIGQAFDLAYRKYMDSTEKTNLS
KAQQQINHLQQTVNVYKERLREVSAKLPKAELDALLFNLGIKDILEAPTT
EPQNGIEVASEALSNGKLDDDKLLIDTNSTTASTHSASPSSFLPIVPPRN
NLSSQISIGGKSNSQKMDELLLNSDSDSDFDPRADETQEIGGTGRSAISN
MFGFEPANSFGQHLFSNNNDHKLQNNNSSLLITSNNNSINSSGFSSELNI
TPPLLAPPPKIAAPRRLNSVTTGNGLNGNTDLFGSDPFELNNGPNIFKQN
QLNLDDFSLESLDPLRK*

BS04235.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
ced-6-PD 533 CG11804-PD 17..533 1..517 2661 100 Plus
ced-6-PA 517 CG11804-PA 1..517 1..517 2661 100 Plus
ced-6-PC 517 CG11804-PC 1..517 1..517 2661 100 Plus
ced-6-PB 517 CG11804-PB 1..517 1..517 2661 100 Plus
ced-6-PF 514 CG11804-PF 1..514 1..517 2631 99.4 Plus