Clone Sequence Records
BS04236.3prime Sequence
948 bp (806 high quality bases) assembled on 2005-12-01
> BS04236.3prime
ATGGTCTAGAAAGCTTTCACTCGGCGTAGAGCAGTCGTGAACGTGATTTC
CGGAGGCCGCGAGAGCCTCCACCGCCGATTCCACTGTCTCCGCCCTCGCC
ACATTGCCAGGACTTGGTCTTGGCCCGAAAATATCGAAACTCATCATTGT
GCGCCGGTGCCAGCATTGGTACATATTGGCTGGGCTGGCATAGCTGCGAG
TATAGACCGAAGAACTCCTTGTACCCATTGTGCAGGATATAAAGTTCAGG
ATAGTCCAGTGCCGGATAGTTGTGGGTATGCTGACTTCTGTCGTTGCTCC
GCAGGTAGCGCAATAGCTTGGGACCCCGTTCCGAGGAGAACTCACAGTGG
AAGACGTAGATGCGTCGATTTTCCTGATTGGAGGTCAGCGTGGGAAACGC
CTCCTGTATCTGCCCACGTGTGTACAAATTCTTCGCTCCCCGTATGTGTC
CGCCAAGGAACTCGTATGGGTAACGGCAGTCTATGATCTCGTATCCGCCC
TGGCTTCCCAATTGTTCATCAAACTCGCCCTGAATCAGTCTGGCCAATGT
GTCACTGGAGATGGTCTTTAGATCACGATGTCTAATGCCTGTCGCCAAAC
AGGGCAGGGTACATGGCTTGCTGAGATCTCCGATTAACTCTGGTTCATCT
CCCAGTGCTCTCATGATCTCGGCGTCGTTCATTGATAGAGTTTTCCGTTG
CATCTTCTTCATGGGCATGTTGGTCTCCTGATCTGGTTCTTGAACCGCTT
CCTCTGGCTGTTCACTGGGATACATGCTAAGGCAGCGACGCAGGGAGCCT
TTTTTGTTGGACATCTCCTCTAAATTGCTTTCCGATTTCAGCTGTCCGCT
GAGGAGCACTTCCAAGTCATCGGGCAACTCAAGATTGTGATTCTCGGCTG
ATTCCATTTCGAACATGTCCATGTACTCATCATCCAGCGAGTTGCCCG
BS04236.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4965-PA | 1281 | twe-RA | 350..1281 | 948..17 | 4660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twe-RD | 1916 | CG4965-RD | 637..1568 | 948..17 | 4660 | 100 | Minus |
| twe-RC | 2240 | CG4965-RC | 498..1429 | 948..17 | 4660 | 100 | Minus |
| twe-RB | 1803 | CG4965-RB | 524..1455 | 948..17 | 4660 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16260225..16261156 | 17..948 | 4660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:36:03 has no hits.
BS04236.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:22 Download gff for
BS04236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-PA | 350..1281 | 17..948 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:12 Download gff for
BS04236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4965-PA | 350..1281 | 17..948 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:06 Download gff for
BS04236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RB | 524..1462 | 9..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:48 Download gff for
BS04236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RB | 524..1462 | 9..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:48 Download gff for
BS04236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16260218..16261156 | 9..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:06 Download gff for
BS04236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16260218..16261156 | 9..948 | 99 | | Plus |
BS04236.5prime Sequence
850 bp (779 high quality bases) assembled on 2005-11-29
> BS04236.5prime
GAAGTTATCAGTCGACATGGCGAGCAAGCGGCTAATGCTCGATGTGGAGG
AAGAAGATGATGAAAGTGGAGCGTGTGGTCAGGAGAATTTCGATCCCCAT
GATGCCGATATGGAATACCAGGCCAAAAGGCGAAAATCAGCCGTGCAGGA
GACTCCGCTGCAATGGATGCTGAAGCGGCATATTCCTGCCAGCACCACCG
TTCTGTCGCCCATCACCGAATTGTCGCAGAATATGAATGGAGCCCGCCTG
GATGGCACTCCCAAGTCCACCCAGAGAATCCCAGCCAACAGGACCCTGAA
TAACTTTAATAGCCTGTCCTCGCGAACACTCGGCAGTTTCAGTAGCTCCT
GCTCGAGTTACGAGTCGGGCAACTCGCTGGATGATGAGTACATGGACATG
TTCGAAATGGAATCAGCCGAGAATCACAATCTTGAGTTGCCCGATGACTT
GGAAGTGCTCCTCAGCGGACAGCTGAAATCGGAAAGCAATTTAGAGGAGA
TGTCCAACAAAAAAGGCTCCCTGCGTCGCTGCCTTAGCATGTATCCCAGT
GAACAGCCAGAGGAAGCGGTTCAAGAACCAGATCAGGAGACCAACATGCC
CATGAAGAAGATGCAACGGAAAACTCTATCAATGAACGACGCCGAGATCA
TGAGAGCACTGGGAGATGAACCAGAGTTAATCGGAGATCTCAGCAAGCCA
TGTACCCTGCCCTGTTTGGCGACAGGCATTAGACATCGTGATCTAAAGAC
CATCTCCAGTGACACATTGGCCAGACTGATTCAGGGCGAGTTTGATGAAC
AATTGGGGAAGCCAGGGCGGATACGAGATCATAGACTGCCGTTACCCATA
BS04236.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4965-PA | 1281 | twe-RA | 1..791 | 17..807 | 3955 | 100 | Plus |
| CG4965-PA | 1281 | twe-RA | 789..833 | 806..850 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twe-RD | 1916 | CG4965-RD | 288..1120 | 17..850 | 4145 | 99.9 | Plus |
| twe-RC | 2240 | CG4965-RC | 149..981 | 17..850 | 4145 | 99.9 | Plus |
| twe-RB | 1803 | CG4965-RB | 175..1007 | 17..850 | 4145 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16260673..16261505 | 850..17 | 4120 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:26:33 has no hits.
BS04236.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:23 Download gff for
BS04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-PA | 1..832 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:14 Download gff for
BS04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4965-PA | 1..832 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:11:27 Download gff for
BS04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RB | 169..1006 | 7..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:52:00 Download gff for
BS04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RB | 169..1006 | 7..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:52:00 Download gff for
BS04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16260674..16261505 | 17..849 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:11:27 Download gff for
BS04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16260674..16261505 | 17..849 | 99 | | Minus |
BS04236.complete Sequence
1313 bp (1313 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634889
> BS04236.complete
GAAGTTATCAGTCGACATGGCGAGCAAGCGGCTAATGCTCGATGTGGAGG
AAGAAGATGATGAAAGTGGAGCGTGTGGTCAGGAGAATTTCGATCCCCAT
GATGCCGATATGGAATACCAGGCCAAAAGGCGAAAATCAGCCGTGCAGGA
GACTCCGCTGCAATGGATGCTGAAGCGGCATATTCCTGCCAGCACCACCG
TTCTGTCGCCCATCACCGAATTGTCGCAGAATATGAATGGAGCCCGCCTG
GATGGCACTCCCAAGTCCACCCAGAGAATCCCAGCCAACAGGACCCTGAA
TAACTTTAATAGCCTGTCCTCGCGAACACTCGGCAGTTTCAGTAGCTCCT
GCTCGAGTTACGAGTCGGGCAACTCGCTGGATGATGAGTACATGGACATG
TTCGAAATGGAATCAGCCGAGAATCACAATCTTGAGTTGCCCGATGACTT
GGAAGTGCTCCTCAGCGGACAGCTGAAATCGGAAAGCAATTTAGAGGAGA
TGTCCAACAAAAAAGGCTCCCTGCGTCGCTGCCTTAGCATGTATCCCAGT
GAACAGCCAGAGGAAGCGGTTCAAGAACCAGATCAGGAGACCAACATGCC
CATGAAGAAGATGCAACGGAAAACTCTATCAATGAACGACGCCGAGATCA
TGAGAGCACTGGGAGATGAACCAGAGTTAATCGGAGATCTCAGCAAGCCA
TGTACCCTGCCCTGTTTGGCGACAGGCATTAGACATCGTGATCTAAAGAC
CATCTCCAGTGACACATTGGCCAGACTGATTCAGGGCGAGTTTGATGAAC
AATTGGGAAGCCAGGGCGGATACGAGATCATAGACTGCCGTTACCCATAC
GAGTTCCTTGGCGGACACATACGGGGAGCGAAGAATTTGTACACACGTGG
GCAGATACAGGAGGCGTTTCCCACGCTGACCTCCAATCAGGAAAATCGAC
GCATCTACGTCTTCCACTGTGAGTTCTCCTCGGAACGGGGTCCCAAGCTA
TTGCGCTACCTGCGGAGCAACGACAGAAGTCAGCATACCCACAACTATCC
GGCACTGGACTATCCTGAACTTTATATCCTGCACAATGGGTACAAGGAGT
TCTTCGGTCTATACTCGCAGCTATGCCAGCCCAGCCAATATGTACCAATG
CTGGCACCGGCGCACAATGATGAGTTTCGATATTTTCGGGCCAAGACCAA
GTCCTGGCAATGTGGCGAGGGCGGAGACAGTGGAATCGGCGGTGGAGGCT
CTCGCGGCCTCCGGAAATCACGTTCACGACTGCTCTACGCCGAGTGAAAG
CTTTCTAGACCAT
BS04236.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twe-RD | 1281 | CG4965-PD | 1..1281 | 17..1297 | 6405 | 100 | Plus |
| twe-RC | 1281 | CG4965-PC | 1..1281 | 17..1297 | 6405 | 100 | Plus |
| twe-RB | 1281 | CG4965-PB | 1..1281 | 17..1297 | 6405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twe-RD | 1916 | CG4965-RD | 288..1568 | 17..1297 | 6405 | 100 | Plus |
| twe-RC | 2240 | CG4965-RC | 149..1429 | 17..1297 | 6405 | 100 | Plus |
| twe-RB | 1803 | CG4965-RB | 175..1455 | 17..1297 | 6405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16260225..16261505 | 1297..17 | 6405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:22:19 has no hits.
BS04236.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:59 Download gff for
BS04236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RA | 1..1281 | 17..1297 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:24 Download gff for
BS04236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RA | 280..1573 | 7..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:19 Download gff for
BS04236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RB | 175..1454 | 17..1296 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:59 Download gff for
BS04236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RA | 280..1573 | 7..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:00 Download gff for
BS04236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RB | 175..1454 | 17..1296 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:00 Download gff for
BS04236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16260226..16261505 | 17..1296 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:19 Download gff for
BS04236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16260226..16261505 | 17..1296 | 100 | | Minus |
BS04236.pep Sequence
Translation from 16 to 1296
> BS04236.pep
MASKRLMLDVEEEDDESGACGQENFDPHDADMEYQAKRRKSAVQETPLQW
MLKRHIPASTTVLSPITELSQNMNGARLDGTPKSTQRIPANRTLNNFNSL
SSRTLGSFSSSCSSYESGNSLDDEYMDMFEMESAENHNLELPDDLEVLLS
GQLKSESNLEEMSNKKGSLRRCLSMYPSEQPEEAVQEPDQETNMPMKKMQ
RKTLSMNDAEIMRALGDEPELIGDLSKPCTLPCLATGIRHRDLKTISSDT
LARLIQGEFDEQLGSQGGYEIIDCRYPYEFLGGHIRGAKNLYTRGQIQEA
FPTLTSNQENRRIYVFHCEFSSERGPKLLRYLRSNDRSQHTHNYPALDYP
ELYILHNGYKEFFGLYSQLCQPSQYVPMLAPAHNDEFRYFRAKTKSWQCG
EGGDSGIGGGGSRGLRKSRSRLLYAE*
BS04236.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twe-PD | 426 | CG4965-PD | 1..426 | 1..426 | 2246 | 100 | Plus |
| twe-PC | 426 | CG4965-PC | 1..426 | 1..426 | 2246 | 100 | Plus |
| twe-PB | 426 | CG4965-PB | 1..426 | 1..426 | 2246 | 100 | Plus |
| twe-PA | 426 | CG4965-PA | 1..426 | 1..426 | 2246 | 100 | Plus |
| stg-PB | 479 | CG1395-PB | 107..478 | 101..423 | 711 | 45.1 | Plus |
