Clone BS04237 Report

Search the DGRC for BS04237

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG2608-RA
Protein status:BS04237.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04237.3prime Sequence

798 bp (797 high quality bases) assembled on 2005-12-01

> BS04237.3prime
ATGGTCTAGAAAGCTTTCATGGGTCCTCTGTGGATGTGGTTGCCTCTTGC
GCTTGCTGCTCTTGCTCCAGCTCCTGCTGCTGAGCCAATCGCAGACGCTT
TTTGGCCTGGATGTCGGCCAAAGTTTGTTCGATGGAGCGCACATCCTTCT
TATTCTTGCTAGGCACGAATCCGTAGCTTTGGTTGGTCTCCGTCTTACGG
GCCGCCTGCAGTGCGGCCGACTCTCCGATGAGGTGGGCATACTTGGCCTT
GTAGTTGGTCGTGGGCTTAACTTCGCCGGAGTCCTGATCCGCTGATGTGG
ATGTGGACGAGCCTGAACTTGCTGCTTCGGATGTGGAGGCTTCTTTGTCA
CTTTGCTCCTGCGCCAATCGTTCCCGCCGTCGCTCCGCGTACTCCTTGGC
TATCTCCTCGTTCCAACCGTCTCCGTTCCGACGGGCCGTGACCTCATCCT
CGCCAGGAGCGTGTTCCTTTTTGTACACAACCGAATGTCGGTCCACATCC
TCGCGGCCAAAGCTCATGGCAATGAAGCCGCCATTTTCGGCTACTTCGTG
GATCACCGAGCGATGCACTTTATCCAGCGGCTGAAACTCGATGCATCGCC
TGTCGTCCTTGGCGAATCGCCCCATCCGTTCGTCTACATATTTTCGGAAT
CGGAGGAGCTCCTCTTTCTGTTTGTTCTGCATCCGCTCTAACATTTCGCG
CTGTTTCTTGATCAGCGTCTTCTGTTGCTCGTTGTTGGCAGGCGGCGCAT
CCATGGCGTTGAGTATTGAGTCGAGCAGATCCATGTCGACTGATAACT

BS04237.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2608-PA 768 CG2608-RA 1..768 784..17 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2608-RA 1477 CG2608-RA 191..958 784..17 3840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20646095..20646862 784..17 3840 100 Minus
Blast to na_te.dros performed 2015-02-11 10:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6871 82..20 116 68.8 Minus

BS04237.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:24 Download gff for BS04237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2608-PA 1..768 17..784 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:15 Download gff for BS04237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2608-PA 1..768 17..784 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:57 Download gff for BS04237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 191..958 17..784 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:16 Download gff for BS04237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 191..958 17..784 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:16 Download gff for BS04237.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20646095..20646862 14..784 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:57 Download gff for BS04237.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20646095..20646862 14..784 99 -> Minus

BS04237.5prime Sequence

798 bp (797 high quality bases) assembled on 2005-11-29

> BS04237.5prime
GAAGTTATCAGTCGACATGGATCTGCTCGACTCAATACTCAACGCCATGG
ATGCGCCGCCTGCCAACAACGAGCAACAGAAGACGCTGATCAAGAAACAG
CGCGAAATGTTAGAGCGGATGCAGAACAAACAGAAAGAGGAGCTCCTCCG
ATTCCGAAAATATGTAGACGAACGGATGGGGCGATTCGCCAAGGACGACA
GGCGATGCATCGAGTTTCAGCCGCTGGATAAAGTGCATCGCTCGGTGATC
CACGAAGTAGCCGAAAATGGCGGCTTCATTGCCATGAGCTTTGGCCGCGA
GGATGTGGACCGACATTCGGTTGTGTACAAAAAGGAACACGCTCCTGGCG
AGGATGAGGTCACGGCCCGTCGGAACGGAGACGGTTGGAACGAGGAGATA
GCCAAGGAGTACGCGGAGCGACGGCGGGAACGATTGGCGCAGGAGCAAAG
TGACAAAGAAGCCTCCACATCCGAAGCAGCAAGTTCAGGCTCGTCCACAT
CCACATCAGCGGATCAGGACTCCGGCGAAGTTAAGCCCACGACCAACTAC
AAGGCCAAGTATGCCCACCTCATCGGAGAGTCGGCCGCACTGCAGGCGGC
CCGTAAGACGGAGACCAACCAAAGCTACGGATTCGTGCCTAGCAAGAATA
AGAAGGATGTGCGCTCCATCGAACAAACTTTGGCCGACATCCAGGCCAAA
AAGCGTCTGCGATTGGCTCAGCAGCAGGAGCTGGAGCAAGAGCAGCAAGC
GCAAGAGGCAACCACATCCACAGAGGACCCATGAAAGCTTTCTAGACC

BS04237.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2608-PA 768 CG2608-RA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG2608-RA 1477 CG2608-RA 191..958 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20646095..20646862 17..784 3840 100 Plus
Blast to na_te.dros performed 2015-02-12 12:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6871 719..781 116 68.8 Plus

BS04237.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:25 Download gff for BS04237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2608-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:16 Download gff for BS04237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2608-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:31 Download gff for BS04237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 191..958 17..784 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:25:23 Download gff for BS04237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 191..958 17..784 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:25:23 Download gff for BS04237.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20646095..20646862 17..787 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:31 Download gff for BS04237.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20646095..20646862 17..787 99 -> Plus

BS04237.complete Sequence

800 bp (800 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634890

> BS04237.complete
GAAGTTATCAGTCGACATGGATCTGCTCGACTCAATACTCAACGCCATGG
ATGCGCCGCCTGCCAACAACGAGCAACAGAAGACGCTGATCAAGAAACAG
CGCGAAATGTTAGAGCGGATGCAGAACAAACAGAAAGAGGAGCTCCTCCG
ATTCCGAAAATATGTAGACGAACGGATGGGGCGATTCGCCAAGGACGACA
GGCGATGCATCGAGTTTCAGCCGCTGGATAAAGTGCATCGCTCGGTGATC
CACGAAGTAGCCGAAAATGGCGGCTTCATTGCCATGAGCTTTGGCCGCGA
GGATGTGGACCGACATTCGGTTGTGTACAAAAAGGAACACGCTCCTGGCG
AGGATGAGGTCACGGCCCGTCGGAACGGAGACGGTTGGAACGAGGAGATA
GCCAAGGAGTACGCGGAGCGACGGCGGGAACGATTGGCGCAGGAGCAAAG
TGACAAAGAAGCCTCCACATCCGAAGCAGCAAGTTCAGGCTCGTCCACAT
CCACATCAGCGGATCAGGACTCCGGCGAAGTTAAGCCCACGACCAACTAC
AAGGCCAAGTATGCCCACCTCATCGGAGAGTCGGCCGCACTGCAGGCGGC
CCGTAAGACGGAGACCAACCAAAGCTACGGATTCGTGCCTAGCAAGAATA
AGAAGGATGTGCGCTCCATCGAACAAACTTTGGCCGACATCCAGGCCAAA
AAGCGTCTGCGATTGGCTCAGCAGCAGGAGCTGGAGCAAGAGCAGCAAGC
GCAAGAGGCAACCACATCCACAGAGGACCCATGAAAGCTTTCTAGACCAT

BS04237.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2608-RA 768 CG2608-PA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2608-RA 1477 CG2608-RA 191..958 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20646095..20646862 17..784 3840 100 Plus
Blast to na_te.dros performed 2014-11-27 08:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6871 719..781 116 68.8 Plus

BS04237.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:21 Download gff for BS04237.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:23 Download gff for BS04237.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 189..956 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:08 Download gff for BS04237.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 191..957 17..783 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:21 Download gff for BS04237.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 189..956 17..784 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:28 Download gff for BS04237.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 191..957 17..783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:28 Download gff for BS04237.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20646095..20646861 17..783 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:08 Download gff for BS04237.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20646095..20646861 17..783 100   Plus

BS04237.pep Sequence

Translation from 16 to 783

> BS04237.pep
MDLLDSILNAMDAPPANNEQQKTLIKKQREMLERMQNKQKEELLRFRKYV
DERMGRFAKDDRRCIEFQPLDKVHRSVIHEVAENGGFIAMSFGREDVDRH
SVVYKKEHAPGEDEVTARRNGDGWNEEIAKEYAERRRERLAQEQSDKEAS
TSEAASSGSSTSTSADQDSGEVKPTTNYKAKYAHLIGESAALQAARKTET
NQSYGFVPSKNKKDVRSIEQTLADIQAKKRLRLAQQQELEQEQQAQEATT
STEDP*

BS04237.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2608-PA 255 CG2608-PA 1..255 1..255 1290 100 Plus