Clone Sequence Records
BS04237.3prime Sequence
798 bp (797 high quality bases) assembled on 2005-12-01
> BS04237.3prime
ATGGTCTAGAAAGCTTTCATGGGTCCTCTGTGGATGTGGTTGCCTCTTGC
GCTTGCTGCTCTTGCTCCAGCTCCTGCTGCTGAGCCAATCGCAGACGCTT
TTTGGCCTGGATGTCGGCCAAAGTTTGTTCGATGGAGCGCACATCCTTCT
TATTCTTGCTAGGCACGAATCCGTAGCTTTGGTTGGTCTCCGTCTTACGG
GCCGCCTGCAGTGCGGCCGACTCTCCGATGAGGTGGGCATACTTGGCCTT
GTAGTTGGTCGTGGGCTTAACTTCGCCGGAGTCCTGATCCGCTGATGTGG
ATGTGGACGAGCCTGAACTTGCTGCTTCGGATGTGGAGGCTTCTTTGTCA
CTTTGCTCCTGCGCCAATCGTTCCCGCCGTCGCTCCGCGTACTCCTTGGC
TATCTCCTCGTTCCAACCGTCTCCGTTCCGACGGGCCGTGACCTCATCCT
CGCCAGGAGCGTGTTCCTTTTTGTACACAACCGAATGTCGGTCCACATCC
TCGCGGCCAAAGCTCATGGCAATGAAGCCGCCATTTTCGGCTACTTCGTG
GATCACCGAGCGATGCACTTTATCCAGCGGCTGAAACTCGATGCATCGCC
TGTCGTCCTTGGCGAATCGCCCCATCCGTTCGTCTACATATTTTCGGAAT
CGGAGGAGCTCCTCTTTCTGTTTGTTCTGCATCCGCTCTAACATTTCGCG
CTGTTTCTTGATCAGCGTCTTCTGTTGCTCGTTGTTGGCAGGCGGCGCAT
CCATGGCGTTGAGTATTGAGTCGAGCAGATCCATGTCGACTGATAACT
BS04237.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2608-PA | 768 | CG2608-RA | 1..768 | 784..17 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2608-RA | 1477 | CG2608-RA | 191..958 | 784..17 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20646095..20646862 | 784..17 | 3840 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 10:43:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6871 | 82..20 | 116 | 68.8 | Minus |
BS04237.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:24 Download gff for
BS04237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:15 Download gff for
BS04237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:57 Download gff for
BS04237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 191..958 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:16 Download gff for
BS04237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 191..958 | 17..784 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:16 Download gff for
BS04237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20646095..20646862 | 14..784 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:57 Download gff for
BS04237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20646095..20646862 | 14..784 | 99 | -> | Minus |
BS04237.5prime Sequence
798 bp (797 high quality bases) assembled on 2005-11-29
> BS04237.5prime
GAAGTTATCAGTCGACATGGATCTGCTCGACTCAATACTCAACGCCATGG
ATGCGCCGCCTGCCAACAACGAGCAACAGAAGACGCTGATCAAGAAACAG
CGCGAAATGTTAGAGCGGATGCAGAACAAACAGAAAGAGGAGCTCCTCCG
ATTCCGAAAATATGTAGACGAACGGATGGGGCGATTCGCCAAGGACGACA
GGCGATGCATCGAGTTTCAGCCGCTGGATAAAGTGCATCGCTCGGTGATC
CACGAAGTAGCCGAAAATGGCGGCTTCATTGCCATGAGCTTTGGCCGCGA
GGATGTGGACCGACATTCGGTTGTGTACAAAAAGGAACACGCTCCTGGCG
AGGATGAGGTCACGGCCCGTCGGAACGGAGACGGTTGGAACGAGGAGATA
GCCAAGGAGTACGCGGAGCGACGGCGGGAACGATTGGCGCAGGAGCAAAG
TGACAAAGAAGCCTCCACATCCGAAGCAGCAAGTTCAGGCTCGTCCACAT
CCACATCAGCGGATCAGGACTCCGGCGAAGTTAAGCCCACGACCAACTAC
AAGGCCAAGTATGCCCACCTCATCGGAGAGTCGGCCGCACTGCAGGCGGC
CCGTAAGACGGAGACCAACCAAAGCTACGGATTCGTGCCTAGCAAGAATA
AGAAGGATGTGCGCTCCATCGAACAAACTTTGGCCGACATCCAGGCCAAA
AAGCGTCTGCGATTGGCTCAGCAGCAGGAGCTGGAGCAAGAGCAGCAAGC
GCAAGAGGCAACCACATCCACAGAGGACCCATGAAAGCTTTCTAGACC
BS04237.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2608-PA | 768 | CG2608-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2608-RA | 1477 | CG2608-RA | 191..958 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20646095..20646862 | 17..784 | 3840 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 12:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6871 | 719..781 | 116 | 68.8 | Plus |
BS04237.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:25 Download gff for
BS04237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:16 Download gff for
BS04237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:31 Download gff for
BS04237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 191..958 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:25:23 Download gff for
BS04237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 191..958 | 17..784 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:25:23 Download gff for
BS04237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20646095..20646862 | 17..787 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:31 Download gff for
BS04237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20646095..20646862 | 17..787 | 99 | -> | Plus |
BS04237.complete Sequence
800 bp (800 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634890
> BS04237.complete
GAAGTTATCAGTCGACATGGATCTGCTCGACTCAATACTCAACGCCATGG
ATGCGCCGCCTGCCAACAACGAGCAACAGAAGACGCTGATCAAGAAACAG
CGCGAAATGTTAGAGCGGATGCAGAACAAACAGAAAGAGGAGCTCCTCCG
ATTCCGAAAATATGTAGACGAACGGATGGGGCGATTCGCCAAGGACGACA
GGCGATGCATCGAGTTTCAGCCGCTGGATAAAGTGCATCGCTCGGTGATC
CACGAAGTAGCCGAAAATGGCGGCTTCATTGCCATGAGCTTTGGCCGCGA
GGATGTGGACCGACATTCGGTTGTGTACAAAAAGGAACACGCTCCTGGCG
AGGATGAGGTCACGGCCCGTCGGAACGGAGACGGTTGGAACGAGGAGATA
GCCAAGGAGTACGCGGAGCGACGGCGGGAACGATTGGCGCAGGAGCAAAG
TGACAAAGAAGCCTCCACATCCGAAGCAGCAAGTTCAGGCTCGTCCACAT
CCACATCAGCGGATCAGGACTCCGGCGAAGTTAAGCCCACGACCAACTAC
AAGGCCAAGTATGCCCACCTCATCGGAGAGTCGGCCGCACTGCAGGCGGC
CCGTAAGACGGAGACCAACCAAAGCTACGGATTCGTGCCTAGCAAGAATA
AGAAGGATGTGCGCTCCATCGAACAAACTTTGGCCGACATCCAGGCCAAA
AAGCGTCTGCGATTGGCTCAGCAGCAGGAGCTGGAGCAAGAGCAGCAAGC
GCAAGAGGCAACCACATCCACAGAGGACCCATGAAAGCTTTCTAGACCAT
BS04237.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2608-RA | 768 | CG2608-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2608-RA | 1477 | CG2608-RA | 191..958 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20646095..20646862 | 17..784 | 3840 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6871 | 719..781 | 116 | 68.8 | Plus |
BS04237.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:21 Download gff for
BS04237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:23 Download gff for
BS04237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 189..956 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:08 Download gff for
BS04237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 191..957 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:21 Download gff for
BS04237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 189..956 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:28 Download gff for
BS04237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 191..957 | 17..783 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:28 Download gff for
BS04237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20646095..20646861 | 17..783 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:08 Download gff for
BS04237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20646095..20646861 | 17..783 | 100 | | Plus |
BS04237.pep Sequence
Translation from 16 to 783
> BS04237.pep
MDLLDSILNAMDAPPANNEQQKTLIKKQREMLERMQNKQKEELLRFRKYV
DERMGRFAKDDRRCIEFQPLDKVHRSVIHEVAENGGFIAMSFGREDVDRH
SVVYKKEHAPGEDEVTARRNGDGWNEEIAKEYAERRRERLAQEQSDKEAS
TSEAASSGSSTSTSADQDSGEVKPTTNYKAKYAHLIGESAALQAARKTET
NQSYGFVPSKNKKDVRSIEQTLADIQAKKRLRLAQQQELEQEQQAQEATT
STEDP*
BS04237.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2608-PA | 255 | CG2608-PA | 1..255 | 1..255 | 1290 | 100 | Plus |