Clone Sequence Records
BS04239.3prime Sequence
893 bp (867 high quality bases) assembled on 2005-12-01
> BS04239.3prime
ATGGTCTAGAAAGCTTTCAGATGGGACGCGTGAAGTTGGCGGGGAAGAGT
CCCTTCTCGTTGGTGCCCTCCTTCTGACCCATCAGCCAGCCTTCCTCCTG
ATCCTCGGGATCGTCGTACTCAATAACGCGAATAAGGTCACCAATCTCGA
AGCTCAGCTCATCCACATCCTCCTTGGCGTAGCCATAGGTGGCCTTCACC
CGGTACAGAACTCCAGGCGGCAAGTCAGCAGTATTGGCATCAGCGGGCAC
CTCGTAGATGCGTTCGTCGTCATCCTCAAACGGATTCTTATTAAGATTAT
TTACGCTGTGCCTATTAACTACTGGTACTGGTCTACCTTTCTGACTAGTG
CCTGTGCTGGTCTTAGTATCTGTATCTGTATTCGTATCTGATATGGTTAC
TATATTATCGGTATCTGTTGATGTAACTGAGTGCTGGGTGACTGTTACTG
TTTCTGTGGCTGTGACTGTTGTGTCATTACCTAGTTTCTTCTGCTTGTGC
TCCTCGATGGAATTGCCATTGTTGGCCGCCGCCTCGGCAGCAGCTTCTGC
ATTGGATGTGGTAGATGGCAGTTCCTTGGGCTGTTTGCCACCTTCCTTAA
CAATCGAGGGTTCATTGTTGTTGCCATTGATTTGGGCAGGTGTCGCTGGC
GGGGCAGGTGTCACAGATGCTGCTACTGCTGCTCCCTCAGTTTCCGATGG
CTTCACTGCTTCACTGACCACCGCCTTATCCTCCGTGGGCGATGTCTGCG
TGGTTGTGGTTGCCTTGGCACTCGCATTCAGACCACTGAGCTCGGGACGC
TCCAATGATTTGGTGGTCACCCCATTCTCGACGGGACTGCTGGGCGTGGC
TGATACTAGTGCTGCTGCTGGGGATTCCGGGCGTGGTTCTGGT
BS04239.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8604-PA | 1809 | Amph-RA | 933..1809 | 893..17 | 4385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Amph-RA | 3184 | CG8604-RA | 1329..2206 | 893..16 | 4390 | 100 | Minus |
Amph-RB | 2884 | CG8604-RB | 1274..1681 | 888..481 | 2040 | 100 | Minus |
Amph-RB | 2884 | CG8604-RB | 1681..1906 | 241..16 | 1130 | 100 | Minus |
Amph-RC | 2497 | CG8604-RC | 1274..1519 | 240..16 | 905 | 91.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12609224..12609876 | 893..241 | 3265 | 100 | Minus |
2R | 25286936 | 2R | 12610578..12610722 | 241..97 | 725 | 100 | Minus |
2R | 25286936 | 2R | 12611006..12611090 | 100..16 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:24:24 has no hits.
BS04239.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:26 Download gff for
BS04239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Amph-PA | 933..1809 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:17 Download gff for
BS04239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8604-PA | 933..1809 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:35:37 Download gff for
BS04239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Amph-RA | 1329..2208 | 13..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:01:09 Download gff for
BS04239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Amph-RA | 1329..2208 | 13..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:01:09 Download gff for
BS04239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12611009..12611092 | 13..97 | 98 | | Minus |
2R | 12609224..12609876 | 241..893 | 100 | -> | Minus |
2R | 12610579..12610721 | 98..240 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:35:37 Download gff for
BS04239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8496729..8497381 | 241..893 | 100 | -> | Minus |
arm_2R | 8498084..8498226 | 98..240 | 100 | -> | Minus |
arm_2R | 8498514..8498597 | 13..97 | 98 | | Minus |
BS04239.5prime Sequence
853 bp (811 high quality bases) assembled on 2005-12-01
> BS04239.5prime
GAAGTTATCAGTCGACATGACCGAAAATAAAGGCATAATGCTGGCCAAAT
CTGTTCAAAAACACGCTGGACGTGCCAAGGAGAAGATTCTACAAAACTTG
GGCAAAGTCGATCGCACTGCGGATGAAATCTTCGACGATCACCTGAACAA
CTTCAATCGCCAGCAGGCGAGTGCCAACAGATTACAAAAGGAGTTCAATA
ACTACATAAGATGTGTTCGCGCCGCACAAGCCGCCTCCAAGACTCTGATG
GATTCCGTTTGCGAGATCTACGAGCCACAATGGAGCGGTTACGATGCCCT
GCAAGCACAAACGGGTGCCTCGGAAAGTCTGTGGGCGGACTTTGCGCACA
AATTGGGGGATCAAGTCCTCATTCCGCTCAACACATACACTGGACAGTTT
CCCGAAATGAAGAAAAAAGTAGAGAAGCGCAACCGAAAGCTGATTGATTA
CGATGGCCAACGACACTCGTTTCAGAATCTGCAGGCCAATGCCAACAAGC
GCAAAGATGATGTCAAACTAACCAAAGGACGCGAGCAGCTGGAGGAAGCT
AGACGCACCTACGAAATCCTGAACACGGAACTGCATGACGAGCTGCCCGC
CTTGTATGACTCTAGGATACTGTTTCTGGTCACCAACTTGCAGACACTCT
TCGCCACAGAGCAAGTGTTCCACAACGAAACGGCTAAGATTTACTCGGAA
CTGGAGGCAATCGTCGACAAATTGGCCACAGAATCGCAGCGCGGCTCCAA
TACGCTACGCAAGCAAACAAGCAATCCCATCAAGACATCGAGCCCAGTGC
AGTCGCCAGTGAAATAGTTAAACAATGCCAACATCAACAGCAACTATCAG
AAT
BS04239.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8604-PA | 1809 | Amph-RA | 1..837 | 17..853 | 4135 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Amph-RC | 2497 | CG8604-RC | 397..1233 | 17..853 | 4155 | 99.8 | Plus |
Amph-RB | 2884 | CG8604-RB | 397..1233 | 17..853 | 4155 | 99.8 | Plus |
Amph-RA | 3184 | CG8604-RA | 397..1233 | 17..853 | 4155 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12607123..12607314 | 221..412 | 960 | 100 | Plus |
2R | 25286936 | 2R | 12607544..12607714 | 518..688 | 855 | 100 | Plus |
2R | 25286936 | 2R | 12606913..12607050 | 84..221 | 690 | 100 | Plus |
2R | 25286936 | 2R | 12607376..12607486 | 411..521 | 540 | 99.1 | Plus |
2R | 25286936 | 2R | 12607914..12607998 | 687..771 | 425 | 100 | Plus |
2R | 25286936 | 2R | 12608051..12608138 | 766..853 | 395 | 96.6 | Plus |
2R | 25286936 | 2R | 12594000..12594068 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:41:53 has no hits.
BS04239.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:27 Download gff for
BS04239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Amph-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:18 Download gff for
BS04239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8604-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:48:54 Download gff for
BS04239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Amph-RA | 395..1233 | 14..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:41:17 Download gff for
BS04239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Amph-RA | 395..1233 | 14..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:41:17 Download gff for
BS04239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12608056..12608138 | 771..853 | 97 | | Plus |
2R | 12607544..12607714 | 518..688 | 100 | -> | Plus |
2R | 12593998..12594068 | 14..85 | 98 | -> | Plus |
2R | 12606915..12607050 | 86..221 | 100 | -> | Plus |
2R | 12607124..12607314 | 222..412 | 100 | -> | Plus |
2R | 12607378..12607482 | 413..517 | 100 | -> | Plus |
2R | 12607916..12607997 | 689..770 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:48:54 Download gff for
BS04239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8495049..8495219 | 518..688 | 100 | -> | Plus |
arm_2R | 8495421..8495502 | 689..770 | 100 | -> | Plus |
arm_2R | 8495561..8495643 | 771..853 | 97 | | Plus |
arm_2R | 8481503..8481573 | 14..85 | 98 | -> | Plus |
arm_2R | 8494420..8494555 | 86..221 | 100 | -> | Plus |
arm_2R | 8494629..8494819 | 222..412 | 100 | -> | Plus |
arm_2R | 8494883..8494987 | 413..517 | 100 | -> | Plus |
BS04239.complete Sequence
1841 bp assembled on 2008-08-14
GenBank Submission: FJ634891
> BS04239.complete
GAAGTTATCAGTCGACATGACCGAAAATAAAGGCATAATGCTGGCCAAAT
CTGTTCAAAAACACGCTGGACGTGCCAAGGAGAAGATTCTACAAAACTTG
GGCAAAGTCGATCGCACTGCGGATGAAATCTTCGACGATCACCTGAACAA
CTTCAATCGCCAGCAGGCGAGTGCCAACAGATTACAAAAGGAGTTCAATA
ACTACATAAGATGTGTTCGCGCCGCACAAGCCGCCTCCAAGACTCTGATG
GATTCCGTTTGCGAGATCTACGAGCCACAATGGAGCGGTTACGATGCCCT
GCAAGCACAAACGGGTGCCTCGGAAAGTCTGTGGGCGGACTTTGCGCACA
AATTGGGGGATCAAGTCCTCATTCCGCTCAACACATACACTGGACAGTTT
CCCGAAATGAAGAAAAAAGTAGAGAAGCGCAACCGAAAGCTGATTGATTA
CGATGGCCAACGACACTCGTTTCAGAATCTGCAGGCCAATGCCAACAAGC
GCAAAGATGATGTCAAACTAACCAAAGGACGCGAGCAGCTGGAGGAAGCT
AGACGCACCTACGAAATCCTGAACACGGAACTGCATGACGAGCTGCCCGC
CTTGTATGACTCTAGGATACTGTTTCTGGTCACCAACTTGCAGACACTCT
TCGCCACAGAGCAAGTGTTCCACAACGAAACGGCTAAGATTTACTCGGAA
CTGGAGGCAATCGTCGACAAATTGGCCACAGAATCGCAGCGCGGCTCCAA
TACGCTACGCAAGCAAACAAGCAATCCCATCAAGACATCGAGCCCAGTGC
AGTCGCCAGTGAATAAGTTAAACAATGCCAACATCAACAGCAACTATCAG
AATCAAATAACTACAAACGGTGGCTCCAGTTTGGCAAACAGCCCGACATC
TACCAGCTCGTCGCTGCAAGAGCCTCGATTTGATTCAGTTTCTTCAACAC
CAGAACCACGCCCGGAATCCCCAGCAGCAGCACTAGTATCAGCCACGCCC
AGCAGTCCCGTCGAGAATGGGGTGACCACCAAATCATTGGAGCGTCCCGA
GCTCAGTGGTCTGAATGCGAGTGCCAAGGCAACCACAACCACGCAGACAT
CGCCCACGGAGGATAAGGCGGTGGTCAGTGAAGCAGTGAAGCCATCGGAA
ACTGAGGGAGCAGCAGTAGCAGCATCTGTGACACCTGCCCCGCCAGCGAC
ACCTGCCCAAATCAATGGCAACAACAATGAACCCTCGATTGTTAAGGAAG
GTGGCAAACAGCCCAAGGAACTGCCATCTACCACATCCAATGCAGAAGCT
GCTGCCGAGGCGGCGGCCAACAATGGCAATTCCATCGAGGAGCACAAGCA
GAAGAAACTAGGTAATGACACAACAGTCACAGCCACAGAAACAGTAACAG
TCACCCAGCACTCAGTTACATCAACAGATACCGATAATATAGTAACCATA
TCAGATACGAATACAGATACAGATACTAAGACCAGCACAGGCACTAGTCA
GAAAGGTAGACCAGTACCAGTAGTTAATAGGCACAGCGTAAATAATCTTA
ATAAGAATCCGTTTGAGGATGACGACGAACGCATCTACGAGGTGCCCGCT
GATGCCAATACTGCTGACTTGCCGCCTGGAGTTCTGTACCGGGTGAAGGC
CACCTATGGCTACGCCAAGGAGGATGTGGATGAGCTGAGCTTCGAGATTG
GTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAGGATCAGGAGGAA
GGCTGGCTGATGGGTCAGAAGGAGGGCACCAACGAGAAGGGACTCTTCCC
CGCCAACTTCACGCGTCCCATCTGAAAGCTTTCTAGACCAT
BS04239.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Amph-RA | 1809 | CG8604-PA | 1..1809 | 17..1825 | 9045 | 100 | Plus |
Amph-RC | 1122 | CG8604-PC | 1..877 | 17..893 | 4385 | 100 | Plus |
Amph-RB | 1509 | CG8604-PB | 1..877 | 17..893 | 4385 | 100 | Plus |
Amph-RC | 1122 | CG8604-PC | 878..1122 | 1602..1825 | 875 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Amph-RA | 3184 | CG8604-RA | 397..2206 | 17..1826 | 9050 | 100 | Plus |
Amph-RC | 2497 | CG8604-RC | 397..1273 | 17..893 | 4385 | 100 | Plus |
Amph-RB | 2884 | CG8604-RB | 397..1273 | 17..893 | 4385 | 100 | Plus |
Amph-RC | 2497 | CG8604-RC | 1274..1519 | 1602..1826 | 880 | 91.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12609169..12609876 | 894..1601 | 3540 | 100 | Plus |
2R | 25286936 | 2R | 12607123..12607314 | 221..412 | 960 | 100 | Plus |
2R | 25286936 | 2R | 12607544..12607714 | 518..688 | 855 | 100 | Plus |
2R | 25286936 | 2R | 12610578..12610722 | 1601..1745 | 725 | 100 | Plus |
2R | 25286936 | 2R | 12606913..12607050 | 84..221 | 690 | 100 | Plus |
2R | 25286936 | 2R | 12608051..12608178 | 766..893 | 625 | 99.2 | Plus |
2R | 25286936 | 2R | 12607376..12607486 | 411..521 | 540 | 99.1 | Plus |
2R | 25286936 | 2R | 12607914..12607998 | 687..771 | 425 | 100 | Plus |
2R | 25286936 | 2R | 12611006..12611090 | 1742..1826 | 425 | 100 | Plus |
2R | 25286936 | 2R | 12594000..12594068 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:10:43 has no hits.
BS04239.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:51 Download gff for
BS04239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Amph-RA | 416..2229 | 14..1829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:04 Download gff for
BS04239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Amph-RA | 397..2204 | 17..1824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:28 Download gff for
BS04239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Amph-RA | 418..2225 | 17..1824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:35 Download gff for
BS04239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Amph-RA | 397..2204 | 17..1824 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:35 Download gff for
BS04239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12607378..12607482 | 413..517 | 100 | -> | Plus |
2R | 12607544..12607714 | 518..688 | 100 | -> | Plus |
2R | 12607916..12607997 | 689..770 | 100 | -> | Plus |
2R | 12608056..12608178 | 771..893 | 100 | -> | Plus |
2R | 12607124..12607314 | 222..412 | 100 | -> | Plus |
2R | 12594000..12594068 | 17..85 | 100 | -> | Plus |
2R | 12606915..12607050 | 86..221 | 100 | -> | Plus |
2R | 12609169..12609876 | 894..1601 | 100 | -> | Plus |
2R | 12610579..12610721 | 1602..1744 | 100 | -> | Plus |
2R | 12611009..12611088 | 1745..1824 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:04 Download gff for
BS04239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8481505..8481573 | 17..85 | 100 | -> | Plus |
arm_2R | 8494420..8494555 | 86..221 | 100 | -> | Plus |
arm_2R | 8494629..8494819 | 222..412 | 100 | -> | Plus |
arm_2R | 8494883..8494987 | 413..517 | 100 | -> | Plus |
arm_2R | 8495049..8495219 | 518..688 | 100 | -> | Plus |
arm_2R | 8495421..8495502 | 689..770 | 100 | -> | Plus |
arm_2R | 8495561..8495683 | 771..893 | 100 | -> | Plus |
arm_2R | 8496674..8497381 | 894..1601 | 100 | -> | Plus |
arm_2R | 8498084..8498226 | 1602..1744 | 100 | -> | Plus |
arm_2R | 8498514..8498593 | 1745..1824 | 100 | | Plus |
BS04239.pep Sequence
Translation from 16 to 1824
> BS04239.pep
MTENKGIMLAKSVQKHAGRAKEKILQNLGKVDRTADEIFDDHLNNFNRQQ
ASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTG
ASESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRH
SFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSR
ILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATESQRGSNTLRKQ
TSNPIKTSSPVQSPVNKLNNANINSNYQNQITTNGGSSLANSPTSTSSSL
QEPRFDSVSSTPEPRPESPAAALVSATPSSPVENGVTTKSLERPELSGLN
ASAKATTTTQTSPTEDKAVVSEAVKPSETEGAAVAASVTPAPPATPAQIN
GNNNEPSIVKEGGKQPKELPSTTSNAEAAAEAAANNGNSIEEHKQKKLGN
DTTVTATETVTVTQHSVTSTDTDNIVTISDTNTDTDTKTSTGTSQKGRPV
PVVNRHSVNNLNKNPFEDDDERIYEVPADANTADLPPGVLYRVKATYGYA
KEDVDELSFEIGDLIRVIEYDDPEDQEEGWLMGQKEGTNEKGLFPANFTR
PI*
BS04239.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Amph-PA | 602 | CG8604-PA | 1..602 | 1..602 | 3078 | 100 | Plus |
Amph-PB | 502 | CG8604-PB | 1..432 | 1..452 | 2138 | 94.7 | Plus |
Amph-PC | 373 | CG8604-PC | 1..297 | 1..297 | 1499 | 98.7 | Plus |
Amph-PC | 373 | CG8604-PC | 207..373 | 450..602 | 387 | 55.4 | Plus |
CG34220-PA | 726 | CG34220-PA | 373..586 | 291..501 | 167 | 27.5 | Plus |
Muc68D-PB | 1514 | CG6004-PB | 855..1134 | 227..520 | 167 | 22.6 | Plus |
CG34220-PA | 726 | CG34220-PA | 304..577 | 238..494 | 164 | 22.7 | Plus |