Clone BS04239 Report

Search the DGRC for BS04239

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptAmph-RA
Protein status:BS04239.pep: full length peptide match
Sequenced Size:1841

Clone Sequence Records

BS04239.3prime Sequence

893 bp (867 high quality bases) assembled on 2005-12-01

> BS04239.3prime
ATGGTCTAGAAAGCTTTCAGATGGGACGCGTGAAGTTGGCGGGGAAGAGT
CCCTTCTCGTTGGTGCCCTCCTTCTGACCCATCAGCCAGCCTTCCTCCTG
ATCCTCGGGATCGTCGTACTCAATAACGCGAATAAGGTCACCAATCTCGA
AGCTCAGCTCATCCACATCCTCCTTGGCGTAGCCATAGGTGGCCTTCACC
CGGTACAGAACTCCAGGCGGCAAGTCAGCAGTATTGGCATCAGCGGGCAC
CTCGTAGATGCGTTCGTCGTCATCCTCAAACGGATTCTTATTAAGATTAT
TTACGCTGTGCCTATTAACTACTGGTACTGGTCTACCTTTCTGACTAGTG
CCTGTGCTGGTCTTAGTATCTGTATCTGTATTCGTATCTGATATGGTTAC
TATATTATCGGTATCTGTTGATGTAACTGAGTGCTGGGTGACTGTTACTG
TTTCTGTGGCTGTGACTGTTGTGTCATTACCTAGTTTCTTCTGCTTGTGC
TCCTCGATGGAATTGCCATTGTTGGCCGCCGCCTCGGCAGCAGCTTCTGC
ATTGGATGTGGTAGATGGCAGTTCCTTGGGCTGTTTGCCACCTTCCTTAA
CAATCGAGGGTTCATTGTTGTTGCCATTGATTTGGGCAGGTGTCGCTGGC
GGGGCAGGTGTCACAGATGCTGCTACTGCTGCTCCCTCAGTTTCCGATGG
CTTCACTGCTTCACTGACCACCGCCTTATCCTCCGTGGGCGATGTCTGCG
TGGTTGTGGTTGCCTTGGCACTCGCATTCAGACCACTGAGCTCGGGACGC
TCCAATGATTTGGTGGTCACCCCATTCTCGACGGGACTGCTGGGCGTGGC
TGATACTAGTGCTGCTGCTGGGGATTCCGGGCGTGGTTCTGGT

BS04239.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8604-PA 1809 Amph-RA 933..1809 893..17 4385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
Amph-RA 3184 CG8604-RA 1329..2206 893..16 4390 100 Minus
Amph-RB 2884 CG8604-RB 1274..1681 888..481 2040 100 Minus
Amph-RB 2884 CG8604-RB 1681..1906 241..16 1130 100 Minus
Amph-RC 2497 CG8604-RC 1274..1519 240..16 905 91.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12609224..12609876 893..241 3265 100 Minus
2R 25286936 2R 12610578..12610722 241..97 725 100 Minus
2R 25286936 2R 12611006..12611090 100..16 425 100 Minus
Blast to na_te.dros performed on 2015-02-01 09:24:24 has no hits.

BS04239.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:26 Download gff for BS04239.3prime
Subject Subject Range Query Range Percent Splice Strand
Amph-PA 933..1809 17..893 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:17 Download gff for BS04239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8604-PA 933..1809 17..893 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:35:37 Download gff for BS04239.3prime
Subject Subject Range Query Range Percent Splice Strand
Amph-RA 1329..2208 13..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:01:09 Download gff for BS04239.3prime
Subject Subject Range Query Range Percent Splice Strand
Amph-RA 1329..2208 13..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:01:09 Download gff for BS04239.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12611009..12611092 13..97 98   Minus
2R 12609224..12609876 241..893 100 -> Minus
2R 12610579..12610721 98..240 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:35:37 Download gff for BS04239.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8496729..8497381 241..893 100 -> Minus
arm_2R 8498084..8498226 98..240 100 -> Minus
arm_2R 8498514..8498597 13..97 98   Minus

BS04239.5prime Sequence

853 bp (811 high quality bases) assembled on 2005-12-01

> BS04239.5prime
GAAGTTATCAGTCGACATGACCGAAAATAAAGGCATAATGCTGGCCAAAT
CTGTTCAAAAACACGCTGGACGTGCCAAGGAGAAGATTCTACAAAACTTG
GGCAAAGTCGATCGCACTGCGGATGAAATCTTCGACGATCACCTGAACAA
CTTCAATCGCCAGCAGGCGAGTGCCAACAGATTACAAAAGGAGTTCAATA
ACTACATAAGATGTGTTCGCGCCGCACAAGCCGCCTCCAAGACTCTGATG
GATTCCGTTTGCGAGATCTACGAGCCACAATGGAGCGGTTACGATGCCCT
GCAAGCACAAACGGGTGCCTCGGAAAGTCTGTGGGCGGACTTTGCGCACA
AATTGGGGGATCAAGTCCTCATTCCGCTCAACACATACACTGGACAGTTT
CCCGAAATGAAGAAAAAAGTAGAGAAGCGCAACCGAAAGCTGATTGATTA
CGATGGCCAACGACACTCGTTTCAGAATCTGCAGGCCAATGCCAACAAGC
GCAAAGATGATGTCAAACTAACCAAAGGACGCGAGCAGCTGGAGGAAGCT
AGACGCACCTACGAAATCCTGAACACGGAACTGCATGACGAGCTGCCCGC
CTTGTATGACTCTAGGATACTGTTTCTGGTCACCAACTTGCAGACACTCT
TCGCCACAGAGCAAGTGTTCCACAACGAAACGGCTAAGATTTACTCGGAA
CTGGAGGCAATCGTCGACAAATTGGCCACAGAATCGCAGCGCGGCTCCAA
TACGCTACGCAAGCAAACAAGCAATCCCATCAAGACATCGAGCCCAGTGC
AGTCGCCAGTGAAATAGTTAAACAATGCCAACATCAACAGCAACTATCAG
AAT

BS04239.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8604-PA 1809 Amph-RA 1..837 17..853 4135 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
Amph-RC 2497 CG8604-RC 397..1233 17..853 4155 99.8 Plus
Amph-RB 2884 CG8604-RB 397..1233 17..853 4155 99.8 Plus
Amph-RA 3184 CG8604-RA 397..1233 17..853 4155 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12607123..12607314 221..412 960 100 Plus
2R 25286936 2R 12607544..12607714 518..688 855 100 Plus
2R 25286936 2R 12606913..12607050 84..221 690 100 Plus
2R 25286936 2R 12607376..12607486 411..521 540 99.1 Plus
2R 25286936 2R 12607914..12607998 687..771 425 100 Plus
2R 25286936 2R 12608051..12608138 766..853 395 96.6 Plus
2R 25286936 2R 12594000..12594068 17..85 345 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:41:53 has no hits.

BS04239.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:27 Download gff for BS04239.5prime
Subject Subject Range Query Range Percent Splice Strand
Amph-PA 1..837 17..853 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:18 Download gff for BS04239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8604-PA 1..837 17..853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:48:54 Download gff for BS04239.5prime
Subject Subject Range Query Range Percent Splice Strand
Amph-RA 395..1233 14..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:41:17 Download gff for BS04239.5prime
Subject Subject Range Query Range Percent Splice Strand
Amph-RA 395..1233 14..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:41:17 Download gff for BS04239.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12608056..12608138 771..853 97   Plus
2R 12607544..12607714 518..688 100 -> Plus
2R 12593998..12594068 14..85 98 -> Plus
2R 12606915..12607050 86..221 100 -> Plus
2R 12607124..12607314 222..412 100 -> Plus
2R 12607378..12607482 413..517 100 -> Plus
2R 12607916..12607997 689..770 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:48:54 Download gff for BS04239.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8495049..8495219 518..688 100 -> Plus
arm_2R 8495421..8495502 689..770 100 -> Plus
arm_2R 8495561..8495643 771..853 97   Plus
arm_2R 8481503..8481573 14..85 98 -> Plus
arm_2R 8494420..8494555 86..221 100 -> Plus
arm_2R 8494629..8494819 222..412 100 -> Plus
arm_2R 8494883..8494987 413..517 100 -> Plus

BS04239.complete Sequence

1841 bp assembled on 2008-08-14

GenBank Submission: FJ634891

> BS04239.complete
GAAGTTATCAGTCGACATGACCGAAAATAAAGGCATAATGCTGGCCAAAT
CTGTTCAAAAACACGCTGGACGTGCCAAGGAGAAGATTCTACAAAACTTG
GGCAAAGTCGATCGCACTGCGGATGAAATCTTCGACGATCACCTGAACAA
CTTCAATCGCCAGCAGGCGAGTGCCAACAGATTACAAAAGGAGTTCAATA
ACTACATAAGATGTGTTCGCGCCGCACAAGCCGCCTCCAAGACTCTGATG
GATTCCGTTTGCGAGATCTACGAGCCACAATGGAGCGGTTACGATGCCCT
GCAAGCACAAACGGGTGCCTCGGAAAGTCTGTGGGCGGACTTTGCGCACA
AATTGGGGGATCAAGTCCTCATTCCGCTCAACACATACACTGGACAGTTT
CCCGAAATGAAGAAAAAAGTAGAGAAGCGCAACCGAAAGCTGATTGATTA
CGATGGCCAACGACACTCGTTTCAGAATCTGCAGGCCAATGCCAACAAGC
GCAAAGATGATGTCAAACTAACCAAAGGACGCGAGCAGCTGGAGGAAGCT
AGACGCACCTACGAAATCCTGAACACGGAACTGCATGACGAGCTGCCCGC
CTTGTATGACTCTAGGATACTGTTTCTGGTCACCAACTTGCAGACACTCT
TCGCCACAGAGCAAGTGTTCCACAACGAAACGGCTAAGATTTACTCGGAA
CTGGAGGCAATCGTCGACAAATTGGCCACAGAATCGCAGCGCGGCTCCAA
TACGCTACGCAAGCAAACAAGCAATCCCATCAAGACATCGAGCCCAGTGC
AGTCGCCAGTGAATAAGTTAAACAATGCCAACATCAACAGCAACTATCAG
AATCAAATAACTACAAACGGTGGCTCCAGTTTGGCAAACAGCCCGACATC
TACCAGCTCGTCGCTGCAAGAGCCTCGATTTGATTCAGTTTCTTCAACAC
CAGAACCACGCCCGGAATCCCCAGCAGCAGCACTAGTATCAGCCACGCCC
AGCAGTCCCGTCGAGAATGGGGTGACCACCAAATCATTGGAGCGTCCCGA
GCTCAGTGGTCTGAATGCGAGTGCCAAGGCAACCACAACCACGCAGACAT
CGCCCACGGAGGATAAGGCGGTGGTCAGTGAAGCAGTGAAGCCATCGGAA
ACTGAGGGAGCAGCAGTAGCAGCATCTGTGACACCTGCCCCGCCAGCGAC
ACCTGCCCAAATCAATGGCAACAACAATGAACCCTCGATTGTTAAGGAAG
GTGGCAAACAGCCCAAGGAACTGCCATCTACCACATCCAATGCAGAAGCT
GCTGCCGAGGCGGCGGCCAACAATGGCAATTCCATCGAGGAGCACAAGCA
GAAGAAACTAGGTAATGACACAACAGTCACAGCCACAGAAACAGTAACAG
TCACCCAGCACTCAGTTACATCAACAGATACCGATAATATAGTAACCATA
TCAGATACGAATACAGATACAGATACTAAGACCAGCACAGGCACTAGTCA
GAAAGGTAGACCAGTACCAGTAGTTAATAGGCACAGCGTAAATAATCTTA
ATAAGAATCCGTTTGAGGATGACGACGAACGCATCTACGAGGTGCCCGCT
GATGCCAATACTGCTGACTTGCCGCCTGGAGTTCTGTACCGGGTGAAGGC
CACCTATGGCTACGCCAAGGAGGATGTGGATGAGCTGAGCTTCGAGATTG
GTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAGGATCAGGAGGAA
GGCTGGCTGATGGGTCAGAAGGAGGGCACCAACGAGAAGGGACTCTTCCC
CGCCAACTTCACGCGTCCCATCTGAAAGCTTTCTAGACCAT

BS04239.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
Amph-RA 1809 CG8604-PA 1..1809 17..1825 9045 100 Plus
Amph-RC 1122 CG8604-PC 1..877 17..893 4385 100 Plus
Amph-RB 1509 CG8604-PB 1..877 17..893 4385 100 Plus
Amph-RC 1122 CG8604-PC 878..1122 1602..1825 875 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Amph-RA 3184 CG8604-RA 397..2206 17..1826 9050 100 Plus
Amph-RC 2497 CG8604-RC 397..1273 17..893 4385 100 Plus
Amph-RB 2884 CG8604-RB 397..1273 17..893 4385 100 Plus
Amph-RC 2497 CG8604-RC 1274..1519 1602..1826 880 91.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12609169..12609876 894..1601 3540 100 Plus
2R 25286936 2R 12607123..12607314 221..412 960 100 Plus
2R 25286936 2R 12607544..12607714 518..688 855 100 Plus
2R 25286936 2R 12610578..12610722 1601..1745 725 100 Plus
2R 25286936 2R 12606913..12607050 84..221 690 100 Plus
2R 25286936 2R 12608051..12608178 766..893 625 99.2 Plus
2R 25286936 2R 12607376..12607486 411..521 540 99.1 Plus
2R 25286936 2R 12607914..12607998 687..771 425 100 Plus
2R 25286936 2R 12611006..12611090 1742..1826 425 100 Plus
2R 25286936 2R 12594000..12594068 17..85 345 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:10:43 has no hits.

BS04239.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:51 Download gff for BS04239.complete
Subject Subject Range Query Range Percent Splice Strand
Amph-RA 416..2229 14..1829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:04 Download gff for BS04239.complete
Subject Subject Range Query Range Percent Splice Strand
Amph-RA 397..2204 17..1824 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:28 Download gff for BS04239.complete
Subject Subject Range Query Range Percent Splice Strand
Amph-RA 418..2225 17..1824 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:35 Download gff for BS04239.complete
Subject Subject Range Query Range Percent Splice Strand
Amph-RA 397..2204 17..1824 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:35 Download gff for BS04239.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12607378..12607482 413..517 100 -> Plus
2R 12607544..12607714 518..688 100 -> Plus
2R 12607916..12607997 689..770 100 -> Plus
2R 12608056..12608178 771..893 100 -> Plus
2R 12607124..12607314 222..412 100 -> Plus
2R 12594000..12594068 17..85 100 -> Plus
2R 12606915..12607050 86..221 100 -> Plus
2R 12609169..12609876 894..1601 100 -> Plus
2R 12610579..12610721 1602..1744 100 -> Plus
2R 12611009..12611088 1745..1824 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:04 Download gff for BS04239.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8481505..8481573 17..85 100 -> Plus
arm_2R 8494420..8494555 86..221 100 -> Plus
arm_2R 8494629..8494819 222..412 100 -> Plus
arm_2R 8494883..8494987 413..517 100 -> Plus
arm_2R 8495049..8495219 518..688 100 -> Plus
arm_2R 8495421..8495502 689..770 100 -> Plus
arm_2R 8495561..8495683 771..893 100 -> Plus
arm_2R 8496674..8497381 894..1601 100 -> Plus
arm_2R 8498084..8498226 1602..1744 100 -> Plus
arm_2R 8498514..8498593 1745..1824 100   Plus

BS04239.pep Sequence

Translation from 16 to 1824

> BS04239.pep
MTENKGIMLAKSVQKHAGRAKEKILQNLGKVDRTADEIFDDHLNNFNRQQ
ASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTG
ASESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRH
SFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSR
ILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATESQRGSNTLRKQ
TSNPIKTSSPVQSPVNKLNNANINSNYQNQITTNGGSSLANSPTSTSSSL
QEPRFDSVSSTPEPRPESPAAALVSATPSSPVENGVTTKSLERPELSGLN
ASAKATTTTQTSPTEDKAVVSEAVKPSETEGAAVAASVTPAPPATPAQIN
GNNNEPSIVKEGGKQPKELPSTTSNAEAAAEAAANNGNSIEEHKQKKLGN
DTTVTATETVTVTQHSVTSTDTDNIVTISDTNTDTDTKTSTGTSQKGRPV
PVVNRHSVNNLNKNPFEDDDERIYEVPADANTADLPPGVLYRVKATYGYA
KEDVDELSFEIGDLIRVIEYDDPEDQEEGWLMGQKEGTNEKGLFPANFTR
PI*

BS04239.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Amph-PA 602 CG8604-PA 1..602 1..602 3078 100 Plus
Amph-PB 502 CG8604-PB 1..432 1..452 2138 94.7 Plus
Amph-PC 373 CG8604-PC 1..297 1..297 1499 98.7 Plus
Amph-PC 373 CG8604-PC 207..373 450..602 387 55.4 Plus
CG34220-PA 726 CG34220-PA 373..586 291..501 167 27.5 Plus
Muc68D-PB 1514 CG6004-PB 855..1134 227..520 167 22.6 Plus
CG34220-PA 726 CG34220-PA 304..577 238..494 164 22.7 Plus