Clone Sequence Records
BS04240.3prime Sequence
949 bp (884 high quality bases) assembled on 2005-12-01
> BS04240.3prime
ATGGTCTAGAAAGCTTCTAGGTGATTGGGTTTCGGATTTGGGGTTTGTGG
ATCACGCTGAACTGCAGAATCCACACTACTCGGCATCCAGCGAGAAGCAA
GGCAGTCCGGCCAGCGCCGGATGTGTGGATTGCTGGGAGGAGCGGTGTCG
CTGCGGCATTGGCTGACCATTCTCGCGGTACGTCTTCAGTTTCGTCTCCA
TCGCTCTTAAGCGAATGCTGCTGGTTATATTCGTTTCTATTAACTAAACT
GCCATTGAGGGCGTTGACGCTGACGCTGGTGGCTCTTGTGGCGACAGCAT
TGTCGTGTTTTACCAATTCGCCATTGGCAACAATACCATTTGGCAGCGAG
GCGGACGAGTTCATCGAGCTGTTGACCGTATTTGTGTCGTTTGCCGTGGG
AACGCTCGTTCCATTGACCACTGGGGTAAAGCGTGACTTGACGTTCAGCT
CTTGTTTGAGATCTCTCGTCTCATCCATTAATCGCTGTAGTTTTTCCTGC
AGCAATCCCTTTTCATCCACTTCCAGCTCCAGAAGGGCGTTCTTCTCGTA
GGCCTGATCCAGCATCTTCTCGAAATTCTCTATGCTTTCGTTAAGTATGC
GATGGGCACGTTCCAAATCGTCGTTTTTCTGCTCCAGCTGCCGCAGGTAC
ACCTTCATGGTGTCGCGATCCTTCTTCACCGTTTCCAGCTGTTTCTCCAT
GTTTGACATATCGATGCCATGCGATTCCAACTTGAGCTTGAGAGACTCGT
TTTCCCGCTCAAACATTGTGAGTTTGGCTGTGAGATCTTTGATTATACTC
TGCTTCTGGTCCAGAGTGGCGTCCATTTCTATTTCCATTTCGCGGGACTG
CTCCACAAACTCGTCGTACTCCTGTTTCACGTCTGTCCACTCTTTGTGGT
ACTGCTTAGATCGTTCCCTTCCATATCTGCACTCATCTTCCACACTATT
BS04240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8104-PA | 954 | nudE-RA | 22..954 | 949..17 | 4590 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nudE-RA | 1975 | CG8104-RA | 416..1348 | 949..17 | 4620 | 99.8 | Minus |
| nudE-RD | 1246 | CG8104-RD | 416..1161 | 949..204 | 3685 | 99.7 | Minus |
| nudE-RF | 2133 | CG8104-RF | 416..1160 | 949..205 | 3680 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9900421..9900696 | 738..463 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 9900759..9901019 | 464..204 | 1305 | 100 | Minus |
| 3L | 28110227 | 3L | 9902151..9902338 | 204..17 | 940 | 100 | Minus |
| 3L | 28110227 | 3L | 9900153..9900306 | 890..737 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 9900026..9900086 | 949..889 | 260 | 95.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:35:55 has no hits.
BS04240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:28 Download gff for
BS04240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-PA | 22..954 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:20 Download gff for
BS04240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8104-PA | 22..954 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:27:34 Download gff for
BS04240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RA | 416..1351 | 13..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:06 Download gff for
BS04240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RA | 416..1351 | 13..949 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:06 Download gff for
BS04240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9900423..9900696 | 463..736 | 100 | -> | Minus |
| 3L | 9900026..9900084 | 891..949 | 96 | -> | Minus |
| 3L | 9900153..9900306 | 737..890 | 100 | -> | Minus |
| 3L | 9900761..9901018 | 205..462 | 100 | -> | Minus |
| 3L | 9902151..9902341 | 13..204 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:27:34 Download gff for
BS04240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9893126..9893184 | 891..949 | 96 | -> | Minus |
| arm_3L | 9893253..9893406 | 737..890 | 100 | -> | Minus |
| arm_3L | 9893523..9893796 | 463..736 | 100 | -> | Minus |
| arm_3L | 9893861..9894118 | 205..462 | 100 | -> | Minus |
| arm_3L | 9895251..9895441 | 13..204 | 98 | | Minus |
BS04240.5prime Sequence
913 bp (778 high quality bases) assembled on 2005-11-29
> BS04240.5prime
GAAGTTATCAGTCGACATGGAGTCGCCCCCGATGTTCAATAGTGTGGAAG
ATGAGTGCAGATATTGGAAGGAACGATCTAAGCAGTACCACAAAGAGTGG
ACAGACGTGAAACAGGAGTACGACGAGTTTGTGGAGCAGTCCCGCGAAAT
GGAAATAGAAATGGACGCCACTCTGGACCAGAAGCAGAGTATAATCAAAG
ATCTCACAGCCAAACTCACAATGTTTGAGCGGGAAAACGAGTCTCTCAAG
CTCAAGTTGGAATCGCATGGCATCGATATGTCAAACATGGAGAAACAGCT
GGAAACGGTGAAGAAGGATCGCGACACCATGAAGGTGTACCTGCGGCAGC
TGGAGCAGAAAAACGACGATTTGGAACGTGCCCATCGCATACTTAACGAA
AGCATAGAGAATTTCGAGAAGATGCTGGATCAGGCCTACGAGAAGAACGC
CCTTCTGGAGCTGGAAGTGGATGAAAAGGGATTGCTGCAGGAAAAACTAC
AGCGATTAATGGATGAGACGAGAGATCTCAAACAAGAGCTGAACGTCAAG
TCACGCTTTACCCCAGTGGTCAATGGAACGAGCGTTCCCACGGCAAACGA
CACAAATACGGTCAACAGCTCGATGAACTCGTCCGCCTCGCTGCCAAATG
GTATTGTTGCCAATGGCGAATTGGTAAAACACGACAATGCTGTCGCCACA
AGAGCCACCAGCGTCAGCGTCAACGCCCTCAATGGCAGTTTAGTTAATAG
AAACGAATATAACCAGCAGCATTCGCTTAAGAGCGATGGAGACGAAACTG
AAGACGTACCGCGAGAATGGTCAGCCAATGCCGCAGCGACACCGCTCCTC
CCAGCAATCCACACATCCGGCGCTGGCCGGACTGCCTTGCTTCTCGCTGG
ATGCCGAGTAGTG
BS04240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8104-PA | 954 | nudE-RA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nudE-RA | 1975 | CG8104-RA | 395..1291 | 17..913 | 4485 | 100 | Plus |
| nudE-RD | 1246 | CG8104-RD | 395..1161 | 17..783 | 3835 | 100 | Plus |
| nudE-RF | 2133 | CG8104-RF | 395..1160 | 17..782 | 3830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9900421..9900696 | 249..524 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 9900759..9901019 | 523..783 | 1305 | 100 | Plus |
| 3L | 28110227 | 3L | 9900153..9900306 | 97..250 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 9902151..9902281 | 783..913 | 655 | 100 | Plus |
| 3L | 28110227 | 3L | 9900005..9900086 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:15:27 has no hits.
BS04240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:29 Download gff for
BS04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-PA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:21 Download gff for
BS04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8104-PA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:44:02 Download gff for
BS04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RA | 392..1291 | 14..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:50 Download gff for
BS04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RA | 392..1291 | 14..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:50 Download gff for
BS04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9900761..9901018 | 525..782 | 100 | -> | Plus |
| 3L | 9902151..9902281 | 783..913 | 100 | | Plus |
| 3L | 9900002..9900084 | 14..96 | 98 | -> | Plus |
| 3L | 9900153..9900306 | 97..250 | 100 | -> | Plus |
| 3L | 9900423..9900696 | 251..524 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:44:02 Download gff for
BS04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9893102..9893184 | 14..96 | 98 | -> | Plus |
| arm_3L | 9893253..9893406 | 97..250 | 100 | -> | Plus |
| arm_3L | 9893523..9893796 | 251..524 | 100 | -> | Plus |
| arm_3L | 9893861..9894118 | 525..782 | 100 | -> | Plus |
| arm_3L | 9895251..9895381 | 783..913 | 100 | | Plus |
BS04240.complete Sequence
986 bp (986 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634892
> BS04240.complete
GAAGTTATCAGTCGACATGGAGTCGCCCCCGATGTTCAATAGTGTGGAAG
ATGAGTGCAGATATTGGAAGGAACGATCTAAGCAGTACCACAAAGAGTGG
ACAGACGTGAAACAGGAGTACGACGAGTTTGTGGAGCAGTCCCGCGAAAT
GGAAATAGAAATGGACGCCACTCTGGACCAGAAGCAGAGTATAATCAAAG
ATCTCACAGCCAAACTCACAATGTTTGAGCGGGAAAACGAGTCTCTCAAG
CTCAAGTTGGAATCGCATGGCATCGATATGTCAAACATGGAGAAACAGCT
GGAAACGGTGAAGAAGGATCGCGACACCATGAAGGTGTACCTGCGGCAGC
TGGAGCAGAAAAACGACGATTTGGAACGTGCCCATCGCATACTTAACGAA
AGCATAGAGAATTTCGAGAAGATGCTGGATCAGGCCTACGAGAAGAACGC
CCTTCTGGAGCTGGAAGTGGATGAAAAGGGATTGCTGCAGGAAAAACTAC
AGCGATTAATGGATGAGACGAGAGATCTCAAACAAGAGCTGAACGTCAAG
TCACGCTTTACCCCAGTGGTCAATGGAACGAGCGTTCCCACGGCAAACGA
CACAAATACGGTCAACAGCTCGATGAACTCGTCCGCCTCGCTGCCAAATG
GTATTGTTGCCAATGGCGAATTGGTAAAACACGACAATGCTGTCGCCACA
AGAGCCACCAGCGTCAGCGTCAACGCCCTCAATGGCAGTTTAGTTAATAG
AAACGAATATAACCAGCAGCATTCGCTTAAGAGCGATGGAGACGAAACTG
AAGACGTACCGCGAGAATGGTCAGCCAATGCCGCAGCGACACCGCTCCTC
CCAGCAATCCACACATCCGGCGCTGGCCGGACTGCCTTGCTTCTCGCTGG
ATGCCGAGTAGTGTGGATTCTGCAGTTCAGCGTGATCCACAAACCCCAAA
TCCGAAACCCAATCACCTAGAAGCTTTCTAGACCAT
BS04240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nudE-RA | 954 | CG8104-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
| nudE-RD | 852 | CG8104-PD | 1..767 | 17..783 | 3835 | 100 | Plus |
| nudE-RF | 987 | CG8104-PF | 1..766 | 17..782 | 3830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nudE-RA | 1975 | CG8104-RA | 395..1348 | 17..970 | 4770 | 100 | Plus |
| nudE-RD | 1246 | CG8104-RD | 395..1161 | 17..783 | 3835 | 100 | Plus |
| nudE-RF | 2133 | CG8104-RF | 395..1160 | 17..782 | 3830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9900421..9900696 | 249..524 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 9900759..9901019 | 523..783 | 1305 | 100 | Plus |
| 3L | 28110227 | 3L | 9902151..9902338 | 783..970 | 940 | 100 | Plus |
| 3L | 28110227 | 3L | 9900153..9900306 | 97..250 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 9900005..9900086 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:55:15 has no hits.
BS04240.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:32 Download gff for
BS04240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RA | 1..954 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:46 Download gff for
BS04240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RA | 404..1363 | 14..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:43 Download gff for
BS04240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RA | 395..1348 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:32 Download gff for
BS04240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RA | 404..1363 | 14..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:44 Download gff for
BS04240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RA | 395..1348 | 17..970 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:44 Download gff for
BS04240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9900005..9900084 | 17..96 | 100 | -> | Plus |
| 3L | 9900153..9900306 | 97..250 | 100 | -> | Plus |
| 3L | 9900423..9900696 | 251..524 | 100 | -> | Plus |
| 3L | 9900761..9901018 | 525..782 | 100 | -> | Plus |
| 3L | 9902151..9902338 | 783..970 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:43 Download gff for
BS04240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9893105..9893184 | 17..96 | 100 | -> | Plus |
| arm_3L | 9893253..9893406 | 97..250 | 100 | -> | Plus |
| arm_3L | 9893523..9893796 | 251..524 | 100 | -> | Plus |
| arm_3L | 9893861..9894118 | 525..782 | 100 | -> | Plus |
| arm_3L | 9895251..9895438 | 783..970 | 100 | | Plus |
BS04240.pep Sequence
Translation from 16 to 969
> BS04240.pep
MESPPMFNSVEDECRYWKERSKQYHKEWTDVKQEYDEFVEQSREMEIEMD
ATLDQKQSIIKDLTAKLTMFERENESLKLKLESHGIDMSNMEKQLETVKK
DRDTMKVYLRQLEQKNDDLERAHRILNESIENFEKMLDQAYEKNALLELE
VDEKGLLQEKLQRLMDETRDLKQELNVKSRFTPVVNGTSVPTANDTNTVN
SSMNSSASLPNGIVANGELVKHDNAVATRATSVSVNALNGSLVNRNEYNQ
QHSLKSDGDETEDVPREWSANAAATPLLPAIHTSGAGRTALLLAGCRVVW
ILQFSVIHKPQIRNPIT*
BS04240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nudE-PA | 317 | CG8104-PA | 1..317 | 1..317 | 1620 | 100 | Plus |
| nudE-PD | 283 | CG8104-PD | 1..256 | 1..256 | 1299 | 100 | Plus |
| nudE-PF | 328 | CG8104-PF | 1..256 | 1..256 | 1296 | 99.6 | Plus |
| nudE-PE | 328 | CG8104-PE | 1..256 | 1..256 | 1296 | 99.6 | Plus |
| nudE-PB | 328 | CG8104-PB | 1..256 | 1..256 | 1296 | 99.6 | Plus |
