Clone Sequence Records
BS04242.3prime Sequence
896 bp (851 high quality bases) assembled on 2005-12-01
> BS04242.3prime
ATGGTCTAGAAAGCTTTTAGATTACGGGCTCTGTGATCGCGTAACAAAAT
CCTGCTCCTGCGCCGCACAATTTCACTGGTGGCAGTTGTAAAAGAGTTGG
GGTGCAAACATTTTCGGTGCTGTTGTTGCCGCAGTTCCCATGCTCGTTCC
ATCCCCAGGTGTAGACCTCTCCTGCCGTAGTCCTCAGTAGACCGTGCTCG
GCGCCCATGTGAATTCTGGCAGGACCCTGATCCTCAGGAAGCTTCAGGCG
AAGTGGCGTGGGTATTGCCTGCTGTTCGCTGAACGAACCCATTCCCAGCT
GACCGTAGCAATTGCGACCCCATACGAGGATCTCGTTGTTTTTGAGCACA
GCTGCATTGTGGGTCCAACCCACGGCCAACTGACGCACATCCTCCTCAAA
CTGAAAGGCGTTGGACTGGCCAAACTTGTTGTCACCCAAGGTAAGGATTC
TTTTGGTGCTGCCTCCACCCGTTTCGCTTAGATCCGCGCACTTGAGCACC
ATGTGGTTCTGACCACTCGAAATGGAAACTATCCGCAGTTCGTTGGGATT
GTGGACCTGTATCTTCACCGTATTGCAGCGGTGCAGGCAGGTGGCCGTGA
TATCCAGCTCGATGGGCGGAGGGTCCATAATCCTCAATCGTCCGAAAACG
TAGATTTTGTTGTCTTGCGTAAGGACGGCACAGTGGCGCAGGCCGAAGCT
GATCCTCTGGGCGGGTTCTTCGCGTGGAAGCTTTACTGGCATTGGTCTTC
TCACGGCAGTAAAGCCGCGCTGACAAATTCCCAGCTGCTGAAAGGCATTG
GAGCCCCAGACAAACAGGCGTTTGGTCAACGTGATGGCTCCCGAAATGTC
CCAGCCACAGCTAATGGTTTCCACAGGAACATCCCCGAAGTATTCC
BS04242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7420-PA | 1137 | CG7420-RA | 258..1137 | 896..17 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7420-RA | 1524 | CG7420-RA | 534..1413 | 896..17 | 4400 | 100 | Minus |
CG7420-RB | 1573 | CG7420-RB | 534..1411 | 896..17 | 4360 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1501097..1501873 | 108..884 | 3885 | 100 | Plus |
2L | 23513712 | 2L | 1500946..1501036 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:32:06 has no hits.
BS04242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:33 Download gff for
BS04242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7420-PA | 258..1137 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:26 Download gff for
BS04242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7420-PA | 258..1137 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:53:53 Download gff for
BS04242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7420-RA | 534..1420 | 6..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:32 Download gff for
BS04242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7420-RA | 534..1420 | 6..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:32 Download gff for
BS04242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1500939..1501036 | 6..107 | 95 | <- | Plus |
2L | 1501097..1501872 | 108..883 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:53:53 Download gff for
BS04242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1500939..1501036 | 6..107 | 95 | <- | Plus |
arm_2L | 1501097..1501872 | 108..883 | 100 | <- | Plus |
BS04242.5prime Sequence
882 bp (792 high quality bases) assembled on 2005-11-29
> BS04242.5prime
GAAGTTATCAGTCGACATGGAGGTTTACGCCTGGGGTGCCAATTCTCACG
GCCAGCTCGGCCTTGGCTTTGAGTCCGAATTGTGCATGACACCGCAACGG
GTGGCCAAGTGCTCCTTCGCCCCCGCCCAGGTTCGCTTGATTCGTGGAGG
TGGTGGCCATGTTCTCATCCTCGACACAAGCGGACGGATTCATGCCTGCG
GATGGAACAATCGTGGTCAACTGGGACTGGATTCCACGGAGGAGTGCCAC
AGCGAGTTCAAGATGATCCCCACGGAATACTTCGGGGATGTTCCTGTGGA
AACCATTAGCTGTGGCTGGGACATTTCGGGAGCCATCACGTTGACCAAAC
GCCTGTTTGTCTGGGGCTCCAATGCCTTTCAGCAGCTGGGAATTTGTCAG
CGCGGCTTTACTGCCGTGAGAAGACCAATGCCAGTAAAGCTTCCACGCGA
AGAACCCGCCCAGAGGATCAGCTTCGGCCTGCGCCACTGTGCCGTCCTTA
CGCAAGACAACAAAATCTACGTTTTCGGACGATTGAGGATTATGGACCCT
CCGCCCATCGAGCTGGATATCACGGCCACCTGCCTGCACCGCTGCAATAC
GGTGAAGATACAGGTCCACAATCCCAACGAACTGCGGATAGTTTCCATTT
CGAGTGGTCAGAACCACATGGTGCTCAAGTGCGCGGATCTAAGCGAAACG
GGTGGAGGCAGCACCAAAAGAATCCTTACCTTGGGTGACAACAAGTTTGG
CCAGTCCAACGCCTTTCAGTTTGAGGAGGATGTGCGTCAGTTGGCCGTGG
GTTGGACCCACAATGCAGCTGTGCTCAAAACAACGAGATCCTCGTATGGG
GTCGCAATTGCTACGGTCAGCTGGGAATGGGT
BS04242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7420-PA | 1137 | CG7420-RA | 1..814 | 17..830 | 4070 | 100 | Plus |
CG7420-PA | 1137 | CG7420-RA | 812..867 | 827..882 | 280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7420-RB | 1573 | CG7420-RB | 277..1143 | 17..882 | 4310 | 99.9 | Plus |
CG7420-RA | 1524 | CG7420-RA | 277..1143 | 17..882 | 4310 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1501276..1501873 | 882..286 | 2940 | 99.8 | Minus |
2L | 23513712 | 2L | 1501932..1502185 | 287..34 | 1270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:34:38 has no hits.
BS04242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:34 Download gff for
BS04242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7420-PA | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:27 Download gff for
BS04242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7420-PA | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:53:56 Download gff for
BS04242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7420-RA | 269..1143 | 8..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:30:21 Download gff for
BS04242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7420-RA | 269..1143 | 8..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:30:21 Download gff for
BS04242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1501276..1501872 | 287..882 | 99 | <- | Minus |
2L | 1501933..1502184 | 35..286 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:53:56 Download gff for
BS04242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1501276..1501872 | 287..882 | 99 | <- | Minus |
arm_2L | 1501933..1502184 | 35..286 | 100 | <- | Minus |
BS04242.complete Sequence
1169 bp (1169 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634893
> BS04242.complete
GAAGTTATCAGTCGACATGGAGGTTTACGCCTGGGGTGCCAATTCTCACG
GCCAGCTCGGCCTTGGCTTTGAGTCCGAATTGTGCATGACACCGCAACGG
GTGGCCAAGTGCTCCTTCGCCCCCGCCCAGGTTCGCTTGATTCGTGGAGG
TGGTGGCCATGTTCTCATCCTCGACACAAGCGGACGGATTCATGCCTGCG
GATGGAACAATCGTGGTCAACTGGGACTGGATTCCACGGAGGAGTGCCAC
AGCGAGTTCAAGATGATCCCCACGGAATACTTCGGGGATGTTCCTGTGGA
AACCATTAGCTGTGGCTGGGACATTTCGGGAGCCATCACGTTGACCAAAC
GCCTGTTTGTCTGGGGCTCCAATGCCTTTCAGCAGCTGGGAATTTGTCAG
CGCGGCTTTACTGCCGTGAGAAGACCAATGCCAGTAAAGCTTCCACGCGA
AGAACCCGCCCAGAGGATCAGCTTCGGCCTGCGCCACTGTGCCGTCCTTA
CGCAAGACAACAAAATCTACGTTTTCGGACGATTGAGGATTATGGACCCT
CCGCCCATCGAGCTGGATATCACGGCCACCTGCCTGCACCGCTGCAATAC
GGTGAAGATACAGGTCCACAATCCCAACGAACTGCGGATAGTTTCCATTT
CGAGTGGTCAGAACCACATGGTGCTCAAGTGCGCGGATCTAAGCGAAACG
GGTGGAGGCAGCACCAAAAGAATCCTTACCTTGGGTGACAACAAGTTTGG
CCAGTCCAACGCCTTTCAGTTTGAGGAGGATGTGCGTCAGTTGGCCGTGG
GTTGGACCCACAATGCAGCTGTGCTCAAAAACAACGAGATCCTCGTATGG
GGTCGCAATTGCTACGGTCAGCTGGGAATGGGTTCGTTCAGCGAACAGCA
GGCAATACCCACGCCACTTCGCCTGAAGCTTCCTGAGGATCAGGGTCCTG
CCAGAATTCACATGGGCGCCGAGCACGGTCTACTGAGGACTACGGCAGGA
GAGGTCTACACCTGGGGATGGAACGAGCATGGGAACTGCGGCAACAACAG
CACCGAAAATGTTTGCACCCCAACTCTTTTACAACTGCCACCAGTGAAAT
TGTGCGGCGCAGGAGCAGGATTTTGTTACGCGATCACAGAGCCCGTAATC
TAAAAGCTTTCTAGACCAT
BS04242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7420-RA | 1137 | CG7420-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
CG7420-RB | 1167 | CG7420-PB | 1..1135 | 17..1153 | 5620 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7420-RA | 1524 | CG7420-RA | 277..1413 | 17..1153 | 5685 | 100 | Plus |
CG7420-RB | 1573 | CG7420-RB | 277..1411 | 17..1153 | 5620 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1501097..1501873 | 1062..286 | 3885 | 100 | Minus |
2L | 23513712 | 2L | 1501932..1502185 | 287..34 | 1270 | 100 | Minus |
2L | 23513712 | 2L | 1500946..1501036 | 1153..1063 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:30:38 has no hits.
BS04242.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:47 Download gff for
BS04242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7420-RA | 1..1137 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:08 Download gff for
BS04242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7420-RA | 268..1419 | 8..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:07 Download gff for
BS04242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7420-RA | 277..1411 | 17..1151 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:47 Download gff for
BS04242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7420-RA | 268..1419 | 8..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:03 Download gff for
BS04242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7420-RA | 277..1411 | 17..1151 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:03 Download gff for
BS04242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1500948..1501036 | 1063..1151 | 100 | <- | Minus |
2L | 1501097..1501872 | 287..1062 | 100 | <- | Minus |
2L | 1501933..1502184 | 35..286 | 100 | <- | Minus |
2L | 1502611..1502628 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:07 Download gff for
BS04242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1500948..1501036 | 1063..1151 | 100 | <- | Minus |
arm_2L | 1501097..1501872 | 287..1062 | 100 | <- | Minus |
arm_2L | 1501933..1502184 | 35..286 | 100 | <- | Minus |
arm_2L | 1502611..1502628 | 17..34 | 100 | | Minus |
BS04242.pep Sequence
Translation from 16 to 1152
> BS04242.pep
MEVYAWGANSHGQLGLGFESELCMTPQRVAKCSFAPAQVRLIRGGGGHVL
ILDTSGRIHACGWNNRGQLGLDSTEECHSEFKMIPTEYFGDVPVETISCG
WDISGAITLTKRLFVWGSNAFQQLGICQRGFTAVRRPMPVKLPREEPAQR
ISFGLRHCAVLTQDNKIYVFGRLRIMDPPPIELDITATCLHRCNTVKIQV
HNPNELRIVSISSGQNHMVLKCADLSETGGGSTKRILTLGDNKFGQSNAF
QFEEDVRQLAVGWTHNAAVLKNNEILVWGRNCYGQLGMGSFSEQQAIPTP
LRLKLPEDQGPARIHMGAEHGLLRTTAGEVYTWGWNEHGNCGNNSTENVC
TPTLLQLPPVKLCGAGAGFCYAITEPVI*
BS04242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7420-PA | 378 | CG7420-PA | 1..378 | 1..378 | 2049 | 100 | Plus |
CG7420-PB | 388 | CG7420-PB | 1..349 | 1..349 | 1886 | 99.7 | Plus |
CG9153-PC | 1062 | CG9153-PC | 6..364 | 2..365 | 239 | 27.5 | Plus |
CG9153-PA | 1058 | CG9153-PA | 6..359 | 2..365 | 228 | 26.6 | Plus |
CG9153-PB | 1058 | CG9153-PB | 6..359 | 2..365 | 228 | 26.6 | Plus |
CG9153-PA | 1058 | CG9153-PA | 5..245 | 111..356 | 200 | 28.1 | Plus |