Clone BS04242 Report

Search the DGRC for BS04242

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG7420-RA
Protein status:BS04242.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04242.3prime Sequence

896 bp (851 high quality bases) assembled on 2005-12-01

> BS04242.3prime
ATGGTCTAGAAAGCTTTTAGATTACGGGCTCTGTGATCGCGTAACAAAAT
CCTGCTCCTGCGCCGCACAATTTCACTGGTGGCAGTTGTAAAAGAGTTGG
GGTGCAAACATTTTCGGTGCTGTTGTTGCCGCAGTTCCCATGCTCGTTCC
ATCCCCAGGTGTAGACCTCTCCTGCCGTAGTCCTCAGTAGACCGTGCTCG
GCGCCCATGTGAATTCTGGCAGGACCCTGATCCTCAGGAAGCTTCAGGCG
AAGTGGCGTGGGTATTGCCTGCTGTTCGCTGAACGAACCCATTCCCAGCT
GACCGTAGCAATTGCGACCCCATACGAGGATCTCGTTGTTTTTGAGCACA
GCTGCATTGTGGGTCCAACCCACGGCCAACTGACGCACATCCTCCTCAAA
CTGAAAGGCGTTGGACTGGCCAAACTTGTTGTCACCCAAGGTAAGGATTC
TTTTGGTGCTGCCTCCACCCGTTTCGCTTAGATCCGCGCACTTGAGCACC
ATGTGGTTCTGACCACTCGAAATGGAAACTATCCGCAGTTCGTTGGGATT
GTGGACCTGTATCTTCACCGTATTGCAGCGGTGCAGGCAGGTGGCCGTGA
TATCCAGCTCGATGGGCGGAGGGTCCATAATCCTCAATCGTCCGAAAACG
TAGATTTTGTTGTCTTGCGTAAGGACGGCACAGTGGCGCAGGCCGAAGCT
GATCCTCTGGGCGGGTTCTTCGCGTGGAAGCTTTACTGGCATTGGTCTTC
TCACGGCAGTAAAGCCGCGCTGACAAATTCCCAGCTGCTGAAAGGCATTG
GAGCCCCAGACAAACAGGCGTTTGGTCAACGTGATGGCTCCCGAAATGTC
CCAGCCACAGCTAATGGTTTCCACAGGAACATCCCCGAAGTATTCC

BS04242.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7420-PA 1137 CG7420-RA 258..1137 896..17 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7420-RA 1524 CG7420-RA 534..1413 896..17 4400 100 Minus
CG7420-RB 1573 CG7420-RB 534..1411 896..17 4360 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1501097..1501873 108..884 3885 100 Plus
2L 23513712 2L 1500946..1501036 17..107 455 100 Plus
Blast to na_te.dros performed on 2015-02-06 13:32:06 has no hits.

BS04242.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:33 Download gff for BS04242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7420-PA 258..1137 17..896 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:26 Download gff for BS04242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7420-PA 258..1137 17..896 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:53:53 Download gff for BS04242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 534..1420 6..896 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:32 Download gff for BS04242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 534..1420 6..896 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:32 Download gff for BS04242.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1500939..1501036 6..107 95 <- Plus
2L 1501097..1501872 108..883 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:53:53 Download gff for BS04242.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1500939..1501036 6..107 95 <- Plus
arm_2L 1501097..1501872 108..883 100 <- Plus

BS04242.5prime Sequence

882 bp (792 high quality bases) assembled on 2005-11-29

> BS04242.5prime
GAAGTTATCAGTCGACATGGAGGTTTACGCCTGGGGTGCCAATTCTCACG
GCCAGCTCGGCCTTGGCTTTGAGTCCGAATTGTGCATGACACCGCAACGG
GTGGCCAAGTGCTCCTTCGCCCCCGCCCAGGTTCGCTTGATTCGTGGAGG
TGGTGGCCATGTTCTCATCCTCGACACAAGCGGACGGATTCATGCCTGCG
GATGGAACAATCGTGGTCAACTGGGACTGGATTCCACGGAGGAGTGCCAC
AGCGAGTTCAAGATGATCCCCACGGAATACTTCGGGGATGTTCCTGTGGA
AACCATTAGCTGTGGCTGGGACATTTCGGGAGCCATCACGTTGACCAAAC
GCCTGTTTGTCTGGGGCTCCAATGCCTTTCAGCAGCTGGGAATTTGTCAG
CGCGGCTTTACTGCCGTGAGAAGACCAATGCCAGTAAAGCTTCCACGCGA
AGAACCCGCCCAGAGGATCAGCTTCGGCCTGCGCCACTGTGCCGTCCTTA
CGCAAGACAACAAAATCTACGTTTTCGGACGATTGAGGATTATGGACCCT
CCGCCCATCGAGCTGGATATCACGGCCACCTGCCTGCACCGCTGCAATAC
GGTGAAGATACAGGTCCACAATCCCAACGAACTGCGGATAGTTTCCATTT
CGAGTGGTCAGAACCACATGGTGCTCAAGTGCGCGGATCTAAGCGAAACG
GGTGGAGGCAGCACCAAAAGAATCCTTACCTTGGGTGACAACAAGTTTGG
CCAGTCCAACGCCTTTCAGTTTGAGGAGGATGTGCGTCAGTTGGCCGTGG
GTTGGACCCACAATGCAGCTGTGCTCAAAACAACGAGATCCTCGTATGGG
GTCGCAATTGCTACGGTCAGCTGGGAATGGGT

BS04242.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7420-PA 1137 CG7420-RA 1..814 17..830 4070 100 Plus
CG7420-PA 1137 CG7420-RA 812..867 827..882 280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7420-RB 1573 CG7420-RB 277..1143 17..882 4310 99.9 Plus
CG7420-RA 1524 CG7420-RA 277..1143 17..882 4310 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1501276..1501873 882..286 2940 99.8 Minus
2L 23513712 2L 1501932..1502185 287..34 1270 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:34:38 has no hits.

BS04242.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:34 Download gff for BS04242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7420-PA 1..867 17..882 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:27 Download gff for BS04242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7420-PA 1..867 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:53:56 Download gff for BS04242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 269..1143 8..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:30:21 Download gff for BS04242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 269..1143 8..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:30:21 Download gff for BS04242.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1501276..1501872 287..882 99 <- Minus
2L 1501933..1502184 35..286 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:53:56 Download gff for BS04242.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1501276..1501872 287..882 99 <- Minus
arm_2L 1501933..1502184 35..286 100 <- Minus

BS04242.complete Sequence

1169 bp (1169 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634893

> BS04242.complete
GAAGTTATCAGTCGACATGGAGGTTTACGCCTGGGGTGCCAATTCTCACG
GCCAGCTCGGCCTTGGCTTTGAGTCCGAATTGTGCATGACACCGCAACGG
GTGGCCAAGTGCTCCTTCGCCCCCGCCCAGGTTCGCTTGATTCGTGGAGG
TGGTGGCCATGTTCTCATCCTCGACACAAGCGGACGGATTCATGCCTGCG
GATGGAACAATCGTGGTCAACTGGGACTGGATTCCACGGAGGAGTGCCAC
AGCGAGTTCAAGATGATCCCCACGGAATACTTCGGGGATGTTCCTGTGGA
AACCATTAGCTGTGGCTGGGACATTTCGGGAGCCATCACGTTGACCAAAC
GCCTGTTTGTCTGGGGCTCCAATGCCTTTCAGCAGCTGGGAATTTGTCAG
CGCGGCTTTACTGCCGTGAGAAGACCAATGCCAGTAAAGCTTCCACGCGA
AGAACCCGCCCAGAGGATCAGCTTCGGCCTGCGCCACTGTGCCGTCCTTA
CGCAAGACAACAAAATCTACGTTTTCGGACGATTGAGGATTATGGACCCT
CCGCCCATCGAGCTGGATATCACGGCCACCTGCCTGCACCGCTGCAATAC
GGTGAAGATACAGGTCCACAATCCCAACGAACTGCGGATAGTTTCCATTT
CGAGTGGTCAGAACCACATGGTGCTCAAGTGCGCGGATCTAAGCGAAACG
GGTGGAGGCAGCACCAAAAGAATCCTTACCTTGGGTGACAACAAGTTTGG
CCAGTCCAACGCCTTTCAGTTTGAGGAGGATGTGCGTCAGTTGGCCGTGG
GTTGGACCCACAATGCAGCTGTGCTCAAAAACAACGAGATCCTCGTATGG
GGTCGCAATTGCTACGGTCAGCTGGGAATGGGTTCGTTCAGCGAACAGCA
GGCAATACCCACGCCACTTCGCCTGAAGCTTCCTGAGGATCAGGGTCCTG
CCAGAATTCACATGGGCGCCGAGCACGGTCTACTGAGGACTACGGCAGGA
GAGGTCTACACCTGGGGATGGAACGAGCATGGGAACTGCGGCAACAACAG
CACCGAAAATGTTTGCACCCCAACTCTTTTACAACTGCCACCAGTGAAAT
TGTGCGGCGCAGGAGCAGGATTTTGTTACGCGATCACAGAGCCCGTAATC
TAAAAGCTTTCTAGACCAT

BS04242.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7420-RA 1137 CG7420-PA 1..1137 17..1153 5685 100 Plus
CG7420-RB 1167 CG7420-PB 1..1135 17..1153 5620 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7420-RA 1524 CG7420-RA 277..1413 17..1153 5685 100 Plus
CG7420-RB 1573 CG7420-RB 277..1411 17..1153 5620 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1501097..1501873 1062..286 3885 100 Minus
2L 23513712 2L 1501932..1502185 287..34 1270 100 Minus
2L 23513712 2L 1500946..1501036 1153..1063 455 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:30:38 has no hits.

BS04242.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:47 Download gff for BS04242.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 1..1137 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:08 Download gff for BS04242.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 268..1419 8..1164 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:07 Download gff for BS04242.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 277..1411 17..1151 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:47 Download gff for BS04242.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 268..1419 8..1164 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:03 Download gff for BS04242.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 277..1411 17..1151 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:03 Download gff for BS04242.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1500948..1501036 1063..1151 100 <- Minus
2L 1501097..1501872 287..1062 100 <- Minus
2L 1501933..1502184 35..286 100 <- Minus
2L 1502611..1502628 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:07 Download gff for BS04242.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1500948..1501036 1063..1151 100 <- Minus
arm_2L 1501097..1501872 287..1062 100 <- Minus
arm_2L 1501933..1502184 35..286 100 <- Minus
arm_2L 1502611..1502628 17..34 100   Minus

BS04242.pep Sequence

Translation from 16 to 1152

> BS04242.pep
MEVYAWGANSHGQLGLGFESELCMTPQRVAKCSFAPAQVRLIRGGGGHVL
ILDTSGRIHACGWNNRGQLGLDSTEECHSEFKMIPTEYFGDVPVETISCG
WDISGAITLTKRLFVWGSNAFQQLGICQRGFTAVRRPMPVKLPREEPAQR
ISFGLRHCAVLTQDNKIYVFGRLRIMDPPPIELDITATCLHRCNTVKIQV
HNPNELRIVSISSGQNHMVLKCADLSETGGGSTKRILTLGDNKFGQSNAF
QFEEDVRQLAVGWTHNAAVLKNNEILVWGRNCYGQLGMGSFSEQQAIPTP
LRLKLPEDQGPARIHMGAEHGLLRTTAGEVYTWGWNEHGNCGNNSTENVC
TPTLLQLPPVKLCGAGAGFCYAITEPVI*

BS04242.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7420-PA 378 CG7420-PA 1..378 1..378 2049 100 Plus
CG7420-PB 388 CG7420-PB 1..349 1..349 1886 99.7 Plus
CG9153-PC 1062 CG9153-PC 6..364 2..365 239 27.5 Plus
CG9153-PA 1058 CG9153-PA 6..359 2..365 228 26.6 Plus
CG9153-PB 1058 CG9153-PB 6..359 2..365 228 26.6 Plus
CG9153-PA 1058 CG9153-PA 5..245 111..356 200 28.1 Plus