Clone BS04243 Report

Search the DGRC for BS04243

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptC1GalTA-RA
Protein status:BS04243.pep: full length peptide match
Sequenced Size:1198

Clone Sequence Records

BS04243.3prime Sequence

980 bp (858 high quality bases) assembled on 2005-12-01

> BS04243.3prime
ATGGTCTAGAAAGTTTTATTGCGTCTTTGTCTCGGCGGATCTCTTGGAGA
CCCCATCACTTGTGCTTTCCGTCGCCTGCTCCTTGATCTCCGGCATCAGT
TCGCCCACGGCTAGCTTATTCGGCAACGCATCGGGTGTGTTTATGATCCC
GTACGGTCTCAGATGGTAGATCAGATAATCCAGCACATACATTTGATTGG
GGGAGACGTAGTGGAACGATATGGCGTTGTCCGAGCAGCAGTCAAGTCCC
TCATCCGTCTTGTAGAAGATATACTGCCAGTACCAGAACTTCTTGTCCGT
GTGCGATGGAATCAGATGGTGCTCGGGCACAAATGGAAAGAAGCGACCCC
GACCGTTTGAGTCTCGCGAGTCCCCAGCGAGCACGTTTACATTCTGCAGA
CATTTGCCAATCTCCACGTCCTCAGCACCCGAGTTATCCGACTTGCACAG
CTTCGGATTGGGCAGGGCTTCGACCACAAAGCGACGCACAGCCTCCCGGC
TGAGAACGTAGCCGGCACCGCCGGACATGTAGCCTTGTTTCACGTACGGC
TTGAACTTGCAGCCGAAGTAGACTGGAGTTTCCGGACTGTACGGATACAG
CATGTATCGCATGTTCTCCACTATCGTGTATGTGTCATCGTCAGCCTTCA
GGAACCAGTCGGCGTCGTTGATGTGATGCTCGTAGATGTATTTGTAGGCC
TCCTTCGTCTTGCCCCATAGGTTGTTGCGACCCTCGCCTACGGGCAGAGC
CACTGCGTCCAGCTCGTCGTCCTTGGCGGAGCTCATAAAGATCAGCTTGT
TGCAACGCTTGCCCCAGGTGCGCTTCACGTGGCGCGCCTTCTTCTGATGG
TTGCTCGGATTGTTCATGATCCAGCAGAGCACACGCACCTCGCTGTACAG
TCGCTCCGCAATGGTCGAGTTCTCGTGCACGTGCTCGTGTCCACCCACGT
CCTGGTCCGGGCCGGACATCTCCATCATGT

BS04243.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9520-PB 1167 CG9520-RB 203..1167 980..16 4750 99.6 Minus
CG9520-PC 1167 CG9520-RC 203..1167 980..16 4750 99.6 Minus
CG9520-PA 1167 CG9520-RA 203..1167 980..16 4750 99.6 Minus
CG8708-PA 933 CG8708-RA 609..698 559..470 150 86.6 Minus
CG8708-PB 1353 CG8708-RB 609..698 559..470 150 86.6 Minus
CG8708-PA 933 CG8708-RA 323..370 845..798 140 91.6 Minus
CG8708-PB 1353 CG8708-RB 323..370 845..798 140 91.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
C1GalTA-RA 1931 CG9520-RA 488..1452 980..16 4780 99.7 Minus
C1GalTA-RC 2019 CG9520-RC 576..1540 980..16 4780 99.7 Minus
C1GalTA-RB 2227 CG9520-RB 784..1748 980..16 4780 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8944232..8944963 249..980 3615 99.6 Plus
2L 23513712 2L 8943934..8944169 16..251 1180 100 Plus
2R 25286936 2R 8160250..8160684 445..879 690 77.2 Plus
Blast to na_te.dros performed on 2015-02-10 18:38:34 has no hits.

BS04243.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:35 Download gff for BS04243.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9520-PB 203..1167 16..980 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:28 Download gff for BS04243.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9520-PC 203..1167 16..980 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:02:53 Download gff for BS04243.3prime
Subject Subject Range Query Range Percent Splice Strand
C1GalTA-RB 784..1748 16..980 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:56 Download gff for BS04243.3prime
Subject Subject Range Query Range Percent Splice Strand
C1GalTA-RB 784..1748 16..980 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:56 Download gff for BS04243.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8943934..8944167 16..249 100 <- Plus
2L 8944233..8944963 250..980 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:02:53 Download gff for BS04243.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8943934..8944167 16..249 100 <- Plus
arm_2L 8944233..8944963 250..980 99   Plus

BS04243.5prime Sequence

901 bp (782 high quality bases) assembled on 2005-12-01

> BS04243.5prime
GAAGTTATCAGTCGACATGACTGCCAACAGTCTGCTAGGAAGGTCCATAC
TCAATGAAGGTCGCTCAAACAAGCGATCATTTGTGTCCCTGATTGTGGGC
CTGATCGTGGGCTTCTGCCTGGCGGAGCTGTTCGTCTACTCCACGCCGGA
GCGAAGTGAATTCATGCCATACGATGGCCATCGGCACGGCGACGTGAACG
ATGCACATCACAGCCACGACATGATGGAGATGTCCGGACCGGAACAGGAC
GTGGGTGGACACGAGCACGTGCACGAGAACTCGACCATTGCGGAGCGACT
GTACAGCGAGGTGCGTGTGCTCTGCTGGATCATGACCAATCCGAGCAACC
ATCAGAAGAAGGCGCGCCACGTGAAGCGCACCTGGGGCAAGCGTTGCAAC
AAGCTGATCTTTATGAGCTCCGCCAAGGACGACGAGCTGGACGCAGTGGC
TCTGCCCGTAGGCGAGGGTCGCAACAACCTATGGGGCAAGACGAAGGAGG
CCTACAAATACATCTACGAGCATCACATCAACGACGCCGACTGGTTCCTG
AAGGCTGACGATGACACATACACGATAGTGGAGAACATGCGATACATGCT
GTATCCGTACAGTCCGGAAACTCCAGTCTACTTCGGCTGCAAGTTCAAGC
CGTACGTGAAACAAGGCTACATGTCCGGCGGTGCCGGCTACGTTCTCAGC
CGGGAGGCTGTGCGTCGCTTTGTGGTCGAAGCCCTGCCCAATCCGAAGCT
GTGCAAGTCGGATAACTCGGGTGCTGAGGACGTGGAGATTGGCAAATGTC
TGCAGAATGTAAACGTGCTCGCTGGGGACTCGCGAGACTCAAACGGTCGG
GGTCGCTTCTTTCCATTTGTGCCCGAGCACCATCTGATTCCATCGCACAC
G

BS04243.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9520-PB 1167 CG9520-RB 1..885 17..901 4425 100 Plus
CG9520-PC 1167 CG9520-RC 1..885 17..901 4425 100 Plus
CG9520-PA 1167 CG9520-RA 1..885 17..901 4425 100 Plus
CG8708-PA 933 CG8708-RA 609..698 640..729 150 86.6 Plus
CG8708-PB 1353 CG8708-RB 609..698 640..729 150 86.6 Plus
CG8708-PA 933 CG8708-RA 323..370 354..401 140 91.6 Plus
CG8708-PB 1353 CG8708-RB 323..370 354..401 140 91.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
C1GalTA-RA 1931 CG9520-RA 286..1170 17..901 4425 100 Plus
C1GalTA-RC 2019 CG9520-RC 374..1258 17..901 4425 100 Plus
C1GalTA-RB 2227 CG9520-RB 582..1466 17..901 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8944281..8945124 901..58 4220 100 Minus
2R 25286936 2R 8160250..8160684 754..320 705 77.5 Minus
2L 23513712 2L 8945356..8945400 61..17 225 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:02:19 has no hits.

BS04243.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:36 Download gff for BS04243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9520-PB 1..885 17..901 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:29 Download gff for BS04243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9520-PC 1..885 17..901 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:32:21 Download gff for BS04243.5prime
Subject Subject Range Query Range Percent Splice Strand
C1GalTA-RB 576..1466 10..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:46 Download gff for BS04243.5prime
Subject Subject Range Query Range Percent Splice Strand
C1GalTA-RB 576..1466 10..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:46 Download gff for BS04243.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8944281..8945122 60..901 100 <- Minus
2L 8945358..8945406 10..59 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:32:21 Download gff for BS04243.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8944281..8945122 60..901 100 <- Minus
arm_2L 8945358..8945406 10..59 94   Minus

BS04243.complete Sequence

1198 bp assembled on 2008-08-15

GenBank Submission: FJ634894

> BS04243.complete
GAAGTTATCAGTCGACATGACTGCCAACAGTCTGCTAGGAAGGTCCATAC
TCAATGAAGGTCGCTCAAACAAGCGATCATTTGTGTCCCTGATTGTGGGC
CTGATCGTGGGCTTCTGCCTGGCGGAGCTGTTCGTCTACTCCACGCCGGA
GCGAAGTGAATTCATGCCATACGATGGCCATCGGCACGGCGACGTGAACG
ATGCACATCACAGCCACGACATGATGGAGATGTCCGGACCGGAACAGGAC
GTGGGTGGACACGAGCACGTGCACGAGAACTCGACCATTGCGGAGCGACT
GTACAGCGAGGTGCGTGTGCTCTGCTGGATCATGACCAATCCGAGCAACC
ATCAGAAGAAGGCGCGCCACGTGAAGCGCACCTGGGGCAAGCGTTGCAAC
AAGCTGATCTTTATGAGCTCCGCCAAGGACGACGAGCTGGACGCAGTGGC
TCTGCCCGTAGGCGAGGGTCGCAACAACCTATGGGGCAAGACGAAGGAGG
CCTACAAATACATCTACGAGCATCACATCAACGACGCCGACTGGTTCCTG
AAGGCTGACGATGACACATACACGATAGTGGAGAACATGCGATACATGCT
GTATCCGTACAGTCCGGAAACTCCAGTCTACTTCGGCTGCAAGTTCAAGC
CGTACGTGAAACAAGGCTACATGTCCGGCGGTGCCGGCTACGTTCTCAGC
CGGGAGGCTGTGCGTCGCTTTGTGGTCGAAGCCCTGCCCAATCCGAAGCT
GTGCAAGTCGGATAACTCGGGTGCTGAGGACGTGGAGATTGGCAAATGTC
TGCAGAATGTAAACGTGCTCGCTGGGGACTCGCGAGACTCAAACGGTCGG
GGTCGCTTCTTTCCATTTGTGCCCGAGCACCATCTGATTCCATCGCACAC
GGACAAGAAGTTCTGGTACTGGCAGTATATCTTCTACAAGACGGATGAGG
GACTTGACTGCTGCTCGGACAACGCCATATCGTTCCACTACGTCTCCCCC
AATCAAATGTATGTGCTGGATTATCTGATCTACCATCTGAGACCGTACGG
GATCATAAACACACCCGATGCGTTGCCGAATAAGCTAGCCGTGGGCGAAC
TGATGCCGGAGATCAAGGAGCAGGCGACGGAAAGCACAAGTGATGGGGTC
TCCAAGAGATCCGCCGAGACAAAGACGCAATAAAACTTTCTAGACCAT

BS04243.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
C1GalTA-RA 1167 CG9520-PA 1..1167 17..1183 5835 100 Plus
C1GalTA-RC 1167 CG9520-PC 1..1167 17..1183 5835 100 Plus
C1GalTA-RB 1167 CG9520-PB 1..1167 17..1183 5835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
C1GalTA-RA 1931 CG9520-RA 286..1452 17..1183 5835 100 Plus
C1GalTA-RC 2019 CG9520-RC 374..1540 17..1183 5835 100 Plus
C1GalTA-RB 2227 CG9520-RB 582..1748 17..1183 5835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8944232..8945124 950..58 4465 100 Minus
2L 23513712 2L 8943934..8944169 1183..948 1180 100 Minus
2R 25286936 2R 8160250..8160684 754..320 705 77.5 Minus
2L 23513712 2L 8945356..8945400 61..17 225 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:26:01 has no hits.

BS04243.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:19 Download gff for BS04243.complete
Subject Subject Range Query Range Percent Splice Strand
CG9520-RA 269..1441 10..1183 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:33 Download gff for BS04243.complete
Subject Subject Range Query Range Percent Splice Strand
C1GalTA-RB 582..1746 17..1181 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:02 Download gff for BS04243.complete
Subject Subject Range Query Range Percent Splice Strand
CG9520-RA 275..1439 17..1181 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:35 Download gff for BS04243.complete
Subject Subject Range Query Range Percent Splice Strand
C1GalTA-RB 582..1746 17..1181 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:35 Download gff for BS04243.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8943936..8944167 950..1181 100 <- Minus
2L 8944233..8945122 60..949 100 <- Minus
2L 8945358..8945400 17..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:33 Download gff for BS04243.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8943936..8944167 950..1181 100 <- Minus
arm_2L 8944233..8945122 60..949 100 <- Minus
arm_2L 8945358..8945400 17..59 100   Minus

BS04243.pep Sequence

Translation from 16 to 1182

> BS04243.pep
MTANSLLGRSILNEGRSNKRSFVSLIVGLIVGFCLAELFVYSTPERSEFM
PYDGHRHGDVNDAHHSHDMMEMSGPEQDVGGHEHVHENSTIAERLYSEVR
VLCWIMTNPSNHQKKARHVKRTWGKRCNKLIFMSSAKDDELDAVALPVGE
GRNNLWGKTKEAYKYIYEHHINDADWFLKADDDTYTIVENMRYMLYPYSP
ETPVYFGCKFKPYVKQGYMSGGAGYVLSREAVRRFVVEALPNPKLCKSDN
SGAEDVEIGKCLQNVNVLAGDSRDSNGRGRFFPFVPEHHLIPSHTDKKFW
YWQYIFYKTDEGLDCCSDNAISFHYVSPNQMYVLDYLIYHLRPYGIINTP
DALPNKLAVGELMPEIKEQATESTSDGVSKRSAETKTQ*

BS04243.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
C1GalTA-PA 388 CG9520-PA 1..388 1..388 2106 100 Plus
C1GalTA-PC 388 CG9520-PC 1..388 1..388 2106 100 Plus
C1GalTA-PB 388 CG9520-PB 1..388 1..388 2106 100 Plus
CG8708-PD 450 CG8708-PD 1..359 1..364 1276 63 Plus
CG8708-PB 450 CG8708-PB 1..359 1..364 1276 63 Plus