Clone Sequence Records
BS04243.3prime Sequence
980 bp (858 high quality bases) assembled on 2005-12-01
> BS04243.3prime
ATGGTCTAGAAAGTTTTATTGCGTCTTTGTCTCGGCGGATCTCTTGGAGA
CCCCATCACTTGTGCTTTCCGTCGCCTGCTCCTTGATCTCCGGCATCAGT
TCGCCCACGGCTAGCTTATTCGGCAACGCATCGGGTGTGTTTATGATCCC
GTACGGTCTCAGATGGTAGATCAGATAATCCAGCACATACATTTGATTGG
GGGAGACGTAGTGGAACGATATGGCGTTGTCCGAGCAGCAGTCAAGTCCC
TCATCCGTCTTGTAGAAGATATACTGCCAGTACCAGAACTTCTTGTCCGT
GTGCGATGGAATCAGATGGTGCTCGGGCACAAATGGAAAGAAGCGACCCC
GACCGTTTGAGTCTCGCGAGTCCCCAGCGAGCACGTTTACATTCTGCAGA
CATTTGCCAATCTCCACGTCCTCAGCACCCGAGTTATCCGACTTGCACAG
CTTCGGATTGGGCAGGGCTTCGACCACAAAGCGACGCACAGCCTCCCGGC
TGAGAACGTAGCCGGCACCGCCGGACATGTAGCCTTGTTTCACGTACGGC
TTGAACTTGCAGCCGAAGTAGACTGGAGTTTCCGGACTGTACGGATACAG
CATGTATCGCATGTTCTCCACTATCGTGTATGTGTCATCGTCAGCCTTCA
GGAACCAGTCGGCGTCGTTGATGTGATGCTCGTAGATGTATTTGTAGGCC
TCCTTCGTCTTGCCCCATAGGTTGTTGCGACCCTCGCCTACGGGCAGAGC
CACTGCGTCCAGCTCGTCGTCCTTGGCGGAGCTCATAAAGATCAGCTTGT
TGCAACGCTTGCCCCAGGTGCGCTTCACGTGGCGCGCCTTCTTCTGATGG
TTGCTCGGATTGTTCATGATCCAGCAGAGCACACGCACCTCGCTGTACAG
TCGCTCCGCAATGGTCGAGTTCTCGTGCACGTGCTCGTGTCCACCCACGT
CCTGGTCCGGGCCGGACATCTCCATCATGT
BS04243.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9520-PB | 1167 | CG9520-RB | 203..1167 | 980..16 | 4750 | 99.6 | Minus |
CG9520-PC | 1167 | CG9520-RC | 203..1167 | 980..16 | 4750 | 99.6 | Minus |
CG9520-PA | 1167 | CG9520-RA | 203..1167 | 980..16 | 4750 | 99.6 | Minus |
CG8708-PA | 933 | CG8708-RA | 609..698 | 559..470 | 150 | 86.6 | Minus |
CG8708-PB | 1353 | CG8708-RB | 609..698 | 559..470 | 150 | 86.6 | Minus |
CG8708-PA | 933 | CG8708-RA | 323..370 | 845..798 | 140 | 91.6 | Minus |
CG8708-PB | 1353 | CG8708-RB | 323..370 | 845..798 | 140 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
C1GalTA-RA | 1931 | CG9520-RA | 488..1452 | 980..16 | 4780 | 99.7 | Minus |
C1GalTA-RC | 2019 | CG9520-RC | 576..1540 | 980..16 | 4780 | 99.7 | Minus |
C1GalTA-RB | 2227 | CG9520-RB | 784..1748 | 980..16 | 4780 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8944232..8944963 | 249..980 | 3615 | 99.6 | Plus |
2L | 23513712 | 2L | 8943934..8944169 | 16..251 | 1180 | 100 | Plus |
2R | 25286936 | 2R | 8160250..8160684 | 445..879 | 690 | 77.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:38:34 has no hits.
BS04243.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:35 Download gff for
BS04243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9520-PB | 203..1167 | 16..980 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:28 Download gff for
BS04243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9520-PC | 203..1167 | 16..980 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:02:53 Download gff for
BS04243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C1GalTA-RB | 784..1748 | 16..980 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:56 Download gff for
BS04243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C1GalTA-RB | 784..1748 | 16..980 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:56 Download gff for
BS04243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8943934..8944167 | 16..249 | 100 | <- | Plus |
2L | 8944233..8944963 | 250..980 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:02:53 Download gff for
BS04243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8943934..8944167 | 16..249 | 100 | <- | Plus |
arm_2L | 8944233..8944963 | 250..980 | 99 | | Plus |
BS04243.5prime Sequence
901 bp (782 high quality bases) assembled on 2005-12-01
> BS04243.5prime
GAAGTTATCAGTCGACATGACTGCCAACAGTCTGCTAGGAAGGTCCATAC
TCAATGAAGGTCGCTCAAACAAGCGATCATTTGTGTCCCTGATTGTGGGC
CTGATCGTGGGCTTCTGCCTGGCGGAGCTGTTCGTCTACTCCACGCCGGA
GCGAAGTGAATTCATGCCATACGATGGCCATCGGCACGGCGACGTGAACG
ATGCACATCACAGCCACGACATGATGGAGATGTCCGGACCGGAACAGGAC
GTGGGTGGACACGAGCACGTGCACGAGAACTCGACCATTGCGGAGCGACT
GTACAGCGAGGTGCGTGTGCTCTGCTGGATCATGACCAATCCGAGCAACC
ATCAGAAGAAGGCGCGCCACGTGAAGCGCACCTGGGGCAAGCGTTGCAAC
AAGCTGATCTTTATGAGCTCCGCCAAGGACGACGAGCTGGACGCAGTGGC
TCTGCCCGTAGGCGAGGGTCGCAACAACCTATGGGGCAAGACGAAGGAGG
CCTACAAATACATCTACGAGCATCACATCAACGACGCCGACTGGTTCCTG
AAGGCTGACGATGACACATACACGATAGTGGAGAACATGCGATACATGCT
GTATCCGTACAGTCCGGAAACTCCAGTCTACTTCGGCTGCAAGTTCAAGC
CGTACGTGAAACAAGGCTACATGTCCGGCGGTGCCGGCTACGTTCTCAGC
CGGGAGGCTGTGCGTCGCTTTGTGGTCGAAGCCCTGCCCAATCCGAAGCT
GTGCAAGTCGGATAACTCGGGTGCTGAGGACGTGGAGATTGGCAAATGTC
TGCAGAATGTAAACGTGCTCGCTGGGGACTCGCGAGACTCAAACGGTCGG
GGTCGCTTCTTTCCATTTGTGCCCGAGCACCATCTGATTCCATCGCACAC
G
BS04243.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9520-PB | 1167 | CG9520-RB | 1..885 | 17..901 | 4425 | 100 | Plus |
CG9520-PC | 1167 | CG9520-RC | 1..885 | 17..901 | 4425 | 100 | Plus |
CG9520-PA | 1167 | CG9520-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
CG8708-PA | 933 | CG8708-RA | 609..698 | 640..729 | 150 | 86.6 | Plus |
CG8708-PB | 1353 | CG8708-RB | 609..698 | 640..729 | 150 | 86.6 | Plus |
CG8708-PA | 933 | CG8708-RA | 323..370 | 354..401 | 140 | 91.6 | Plus |
CG8708-PB | 1353 | CG8708-RB | 323..370 | 354..401 | 140 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
C1GalTA-RA | 1931 | CG9520-RA | 286..1170 | 17..901 | 4425 | 100 | Plus |
C1GalTA-RC | 2019 | CG9520-RC | 374..1258 | 17..901 | 4425 | 100 | Plus |
C1GalTA-RB | 2227 | CG9520-RB | 582..1466 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8944281..8945124 | 901..58 | 4220 | 100 | Minus |
2R | 25286936 | 2R | 8160250..8160684 | 754..320 | 705 | 77.5 | Minus |
2L | 23513712 | 2L | 8945356..8945400 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:02:19 has no hits.
BS04243.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:36 Download gff for
BS04243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9520-PB | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:29 Download gff for
BS04243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9520-PC | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:32:21 Download gff for
BS04243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C1GalTA-RB | 576..1466 | 10..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:46 Download gff for
BS04243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C1GalTA-RB | 576..1466 | 10..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:46 Download gff for
BS04243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8944281..8945122 | 60..901 | 100 | <- | Minus |
2L | 8945358..8945406 | 10..59 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:32:21 Download gff for
BS04243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8944281..8945122 | 60..901 | 100 | <- | Minus |
arm_2L | 8945358..8945406 | 10..59 | 94 | | Minus |
BS04243.complete Sequence
1198 bp assembled on 2008-08-15
GenBank Submission: FJ634894
> BS04243.complete
GAAGTTATCAGTCGACATGACTGCCAACAGTCTGCTAGGAAGGTCCATAC
TCAATGAAGGTCGCTCAAACAAGCGATCATTTGTGTCCCTGATTGTGGGC
CTGATCGTGGGCTTCTGCCTGGCGGAGCTGTTCGTCTACTCCACGCCGGA
GCGAAGTGAATTCATGCCATACGATGGCCATCGGCACGGCGACGTGAACG
ATGCACATCACAGCCACGACATGATGGAGATGTCCGGACCGGAACAGGAC
GTGGGTGGACACGAGCACGTGCACGAGAACTCGACCATTGCGGAGCGACT
GTACAGCGAGGTGCGTGTGCTCTGCTGGATCATGACCAATCCGAGCAACC
ATCAGAAGAAGGCGCGCCACGTGAAGCGCACCTGGGGCAAGCGTTGCAAC
AAGCTGATCTTTATGAGCTCCGCCAAGGACGACGAGCTGGACGCAGTGGC
TCTGCCCGTAGGCGAGGGTCGCAACAACCTATGGGGCAAGACGAAGGAGG
CCTACAAATACATCTACGAGCATCACATCAACGACGCCGACTGGTTCCTG
AAGGCTGACGATGACACATACACGATAGTGGAGAACATGCGATACATGCT
GTATCCGTACAGTCCGGAAACTCCAGTCTACTTCGGCTGCAAGTTCAAGC
CGTACGTGAAACAAGGCTACATGTCCGGCGGTGCCGGCTACGTTCTCAGC
CGGGAGGCTGTGCGTCGCTTTGTGGTCGAAGCCCTGCCCAATCCGAAGCT
GTGCAAGTCGGATAACTCGGGTGCTGAGGACGTGGAGATTGGCAAATGTC
TGCAGAATGTAAACGTGCTCGCTGGGGACTCGCGAGACTCAAACGGTCGG
GGTCGCTTCTTTCCATTTGTGCCCGAGCACCATCTGATTCCATCGCACAC
GGACAAGAAGTTCTGGTACTGGCAGTATATCTTCTACAAGACGGATGAGG
GACTTGACTGCTGCTCGGACAACGCCATATCGTTCCACTACGTCTCCCCC
AATCAAATGTATGTGCTGGATTATCTGATCTACCATCTGAGACCGTACGG
GATCATAAACACACCCGATGCGTTGCCGAATAAGCTAGCCGTGGGCGAAC
TGATGCCGGAGATCAAGGAGCAGGCGACGGAAAGCACAAGTGATGGGGTC
TCCAAGAGATCCGCCGAGACAAAGACGCAATAAAACTTTCTAGACCAT
BS04243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:26:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
C1GalTA-RA | 1167 | CG9520-PA | 1..1167 | 17..1183 | 5835 | 100 | Plus |
C1GalTA-RC | 1167 | CG9520-PC | 1..1167 | 17..1183 | 5835 | 100 | Plus |
C1GalTA-RB | 1167 | CG9520-PB | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
C1GalTA-RA | 1931 | CG9520-RA | 286..1452 | 17..1183 | 5835 | 100 | Plus |
C1GalTA-RC | 2019 | CG9520-RC | 374..1540 | 17..1183 | 5835 | 100 | Plus |
C1GalTA-RB | 2227 | CG9520-RB | 582..1748 | 17..1183 | 5835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8944232..8945124 | 950..58 | 4465 | 100 | Minus |
2L | 23513712 | 2L | 8943934..8944169 | 1183..948 | 1180 | 100 | Minus |
2R | 25286936 | 2R | 8160250..8160684 | 754..320 | 705 | 77.5 | Minus |
2L | 23513712 | 2L | 8945356..8945400 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:26:01 has no hits.
BS04243.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:19 Download gff for
BS04243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9520-RA | 269..1441 | 10..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:33 Download gff for
BS04243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C1GalTA-RB | 582..1746 | 17..1181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:02 Download gff for
BS04243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9520-RA | 275..1439 | 17..1181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:35 Download gff for
BS04243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C1GalTA-RB | 582..1746 | 17..1181 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:35 Download gff for
BS04243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8943936..8944167 | 950..1181 | 100 | <- | Minus |
2L | 8944233..8945122 | 60..949 | 100 | <- | Minus |
2L | 8945358..8945400 | 17..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:33 Download gff for
BS04243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8943936..8944167 | 950..1181 | 100 | <- | Minus |
arm_2L | 8944233..8945122 | 60..949 | 100 | <- | Minus |
arm_2L | 8945358..8945400 | 17..59 | 100 | | Minus |
BS04243.pep Sequence
Translation from 16 to 1182
> BS04243.pep
MTANSLLGRSILNEGRSNKRSFVSLIVGLIVGFCLAELFVYSTPERSEFM
PYDGHRHGDVNDAHHSHDMMEMSGPEQDVGGHEHVHENSTIAERLYSEVR
VLCWIMTNPSNHQKKARHVKRTWGKRCNKLIFMSSAKDDELDAVALPVGE
GRNNLWGKTKEAYKYIYEHHINDADWFLKADDDTYTIVENMRYMLYPYSP
ETPVYFGCKFKPYVKQGYMSGGAGYVLSREAVRRFVVEALPNPKLCKSDN
SGAEDVEIGKCLQNVNVLAGDSRDSNGRGRFFPFVPEHHLIPSHTDKKFW
YWQYIFYKTDEGLDCCSDNAISFHYVSPNQMYVLDYLIYHLRPYGIINTP
DALPNKLAVGELMPEIKEQATESTSDGVSKRSAETKTQ*
BS04243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
C1GalTA-PA | 388 | CG9520-PA | 1..388 | 1..388 | 2106 | 100 | Plus |
C1GalTA-PC | 388 | CG9520-PC | 1..388 | 1..388 | 2106 | 100 | Plus |
C1GalTA-PB | 388 | CG9520-PB | 1..388 | 1..388 | 2106 | 100 | Plus |
CG8708-PD | 450 | CG8708-PD | 1..359 | 1..364 | 1276 | 63 | Plus |
CG8708-PB | 450 | CG8708-PB | 1..359 | 1..364 | 1276 | 63 | Plus |