Clone Sequence Records
BS04245.3prime Sequence
958 bp (827 high quality bases) assembled on 2005-12-01
> BS04245.3prime
ATGGTCTAGAAAGCTTCTAAGTGGACCACAGATAGAAGTAAGTGCTTTGC
CACGTGGGAATGTAATCTTTAAGGGGTTTGGCAACCACCTTAGCAATGGG
CACACTTGTGGCCACAAAGTCGAGGATCCGCTCCAGTCTGGATTTGGTGA
AGCTGTCATAGAACGGCGATCGGACCAGGAAGTACATGATGTTTATGCAT
CGCCTGCTCAGCTCCAGTTTTTGTTGCTTGGACATTAGGTCGCGATGCTG
GCGGTAGAGGTGAATGCTATACAAATCAATGGATAATGCTACCATATATT
GCTTCCAACTTCTCCGGCCGAACAGCCCCATGGCGACCAGGTGGATTAGT
GGCTTCGATATATACAGGTATTCTGCTTGCAGGAGTTTCCTCGGAATTTG
CGTCTTCGCCGCTTCATTGTTGTCTATATGAAGCTTGAAGTCGCGGTATT
GCAGGGGAGGAGCACCCTCCACTTTACGAATCACACGGCCAGATCGCTTC
AATTGGAAGGTAATGGAGTGCTGGGACTGCAATAAATCGTTCGTGGAGGA
GGCCACACCATCCCCCGAATTCTTCCTCTGTTTGGCCCTTCGATTCAGTG
CGGCGATGGGCGGTGAGGTGATTATATCCGAGGTTGAGTGTTTCAAGATA
AAGAAACGGCCCGCTGCCTTGAAGGCCTGTATTAGCGCTATCACCAGCCA
CTTGCCGGATTGACCGAAAAGCCGACGGGCTGATATCTCGATGAAAACCT
CGCTATATTCGAGCGTCGTCAACGTGACCTTTAGACGGTAGCAAAGTTTC
GATTGCAGGTGGATCACCGAATTCTCCTCGGAATTGCGTGCCTTTTCGAT
GATCCGGTCGTTGTAGAACACCAGCATGTTTGACAGTGTATATACCAGCT
CACTGACCACATTTGATGAGGAAATGCGACCTGCTATAAAGTAGGATACC
CACTTGGC
BS04245.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3947-PA | 1026 | CG3947-RA | 85..1026 | 958..17 | 4710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex16-RA | 1439 | CG3947-RA | 195..1136 | 958..17 | 4710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20777069..20777985 | 17..933 | 4585 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:44:07 has no hits.
BS04245.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:37 Download gff for
BS04245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-PA | 85..1026 | 17..958 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:30 Download gff for
BS04245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-PA | 85..1026 | 17..958 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:38 Download gff for
BS04245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex16-RA | 195..1145 | 6..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:38:04 Download gff for
BS04245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex16-RA | 195..1145 | 6..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:38:04 Download gff for
BS04245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20777060..20777982 | 6..930 | 99 | <- | Plus |
| 3L | 20778043..20778070 | 931..958 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:38 Download gff for
BS04245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20770160..20771082 | 6..930 | 99 | <- | Plus |
| arm_3L | 20771143..20771170 | 931..958 | 100 | | Plus |
BS04245.5prime Sequence
882 bp (826 high quality bases) assembled on 2005-11-29
> BS04245.5prime
GAAGTTATCAGTCGACATGGACACTCTGAAGGGCATGCTGAAGGCGTACG
AGGCGTGGGTGGGCAAAAACCCCGACGTGGTGGGGGATTTTGAGACCACA
GCCAAGTGGGTATCCTACTTTATAGCAGGTCGCATTTCCTCATCAAATGT
GGTCAGTGAGCTGGTATATACACTGTCAAACATGCTGGTGTTCTACAACG
ACCGGATCATCGAAAAGGCACGCAATTCCGAGGAGAATTCGGTGATCCAC
CTGCAATCGAAACTTTGCTACCGTCTAAAGGTCACGTTGACGACGCTCGA
ATATAGCGAGGTTTTCATCGAGATATCAGCCCGTCGGCTTTTCGGTCAAT
CCGGCAAGTGGCTGGTGATAGCGCTAATACAGGCCTTCAAGGCAGCGGGC
CGTTTCTTTATCTTGAAACACTCAACCTCGGATATAATCACCTCACCGCC
CATCGCCGCACTGAATCGAAGGGCCAAACAGAGGAAGAATTCGGGGGATG
GTGTGGCCTCCTCCACGAACGATTTATTGCAGTCCCAGCACTCCATTACC
TTCCAATTGAAGCGATCTGGCCGTGTGATTCGTAAAGTGGAGGGTGCTCC
TCCCCTGCAATACCGCGACTTCAAGCTTCATATAGACAACAATGAAGCGG
CGAAGACGCAAATTCCGAGGAAACTCCTGCAAGCAGAATACCTGTATATA
TCGAAGCCACTAATCCACCTGGTCGCCATGGGGCTGTTCGGCCGGAGAAG
TTGGAAGCAATATATGGTAGCATTATCCATTGATTTGTATAGCATTCACC
TCTACCGCCAGCATCGCGACCTAATGTCCAAGCACAAAAACTGGAGCTGA
GCAGGCGATGCATAAACATCATGTACTTCCTG
BS04245.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3947-PA | 1026 | CG3947-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
| CG3947-PA | 1026 | CG3947-RA | 819..867 | 834..882 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex16-RA | 1439 | CG3947-RA | 111..977 | 17..882 | 4310 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20777228..20777985 | 882..126 | 3740 | 99.9 | Minus |
| 3L | 28110227 | 3L | 20778041..20778154 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:46:28 has no hits.
BS04245.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:38 Download gff for
BS04245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-PA | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:31 Download gff for
BS04245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-PA | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 11:01:32 Download gff for
BS04245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex16-RA | 111..977 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:33 Download gff for
BS04245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex16-RA | 111..977 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:33 Download gff for
BS04245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20777228..20777982 | 129..882 | 99 | <- | Minus |
| 3L | 20778043..20778154 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 11:01:32 Download gff for
BS04245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20770328..20771082 | 129..882 | 99 | <- | Minus |
| arm_3L | 20771143..20771254 | 17..128 | 100 | | Minus |
BS04245.complete Sequence
1058 bp (1058 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634895
> BS04245.complete
GAAGTTATCAGTCGACATGGACACTCTGAAGGGCATGCTGAAGGCGTACG
AGGCGTGGGTGGGCAAAAACCCCGACGTGGTGGGGGATTTTGAGACCACA
GCCAAGTGGGTATCCTACTTTATAGCAGGTCGCATTTCCTCATCAAATGT
GGTCAGTGAGCTGGTATATACACTGTCAAACATGCTGGTGTTCTACAACG
ACCGGATCATCGAAAAGGCACGCAATTCCGAGGAGAATTCGGTGATCCAC
CTGCAATCGAAACTTTGCTACCGTCTAAAGGTCACGTTGACGACGCTCGA
ATATAGCGAGGTTTTCATCGAGATATCAGCCCGTCGGCTTTTCGGTCAAT
CCGGCAAGTGGCTGGTGATAGCGCTAATACAGGCCTTCAAGGCAGCGGGC
CGTTTCTTTATCTTGAAACACTCAACCTCGGATATAATCACCTCACCGCC
CATCGCCGCACTGAATCGAAGGGCCAAACAGAGGAAGAATTCGGGGGATG
GTGTGGCCTCCTCCACGAACGATTTATTGCAGTCCCAGCACTCCATTACC
TTCCAATTGAAGCGATCTGGCCGTGTGATTCGTAAAGTGGAGGGTGCTCC
TCCCCTGCAATACCGCGACTTCAAGCTTCATATAGACAACAATGAAGCGG
CGAAGACGCAAATTCCGAGGAAACTCCTGCAAGCAGAATACCTGTATATA
TCGAAGCCACTAATCCACCTGGTCGCCATGGGGCTGTTCGGCCGGAGAAG
TTGGAAGCAATATATGGTAGCATTATCCATTGATTTGTATAGCATTCACC
TCTACCGCCAGCATCGCGACCTAATGTCCAAGCAACAAAAACTGGAGCTG
AGCAGGCGATGCATAAACATCATGTACTTCCTGGTCCGATCGCCGTTCTA
TGACAGCTTCACCAAATCCAGACTGGAGCGGATCCTCGACTTTGTGGCCA
CAAGTGTGCCCATTGCTAAGGTGGTTGCCAAACCCCTTAAAGATTACATT
CCCACGTGGCAAAGCACTTACTTCTATCTGTGGTCCACTTAGAAGCTTTC
TAGACCAT
BS04245.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex16-RA | 1026 | CG3947-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex16-RA | 1439 | CG3947-RA | 111..1136 | 17..1042 | 5130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20777069..20777985 | 1042..126 | 4585 | 100 | Minus |
| 3L | 28110227 | 3L | 20778041..20778154 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:14:56 has no hits.
BS04245.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:48 Download gff for
BS04245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-RA | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:10 Download gff for
BS04245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-RA | 87..1121 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:01 Download gff for
BS04245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex16-RA | 111..1136 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:48 Download gff for
BS04245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-RA | 87..1121 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:21:42 Download gff for
BS04245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex16-RA | 111..1136 | 17..1042 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:21:42 Download gff for
BS04245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20777069..20777982 | 129..1042 | 100 | <- | Minus |
| 3L | 20778043..20778154 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:01 Download gff for
BS04245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20770169..20771082 | 129..1042 | 100 | <- | Minus |
| arm_3L | 20771143..20771254 | 17..128 | 100 | | Minus |
BS04245.pep Sequence
Translation from 16 to 1041
> BS04245.pep
MDTLKGMLKAYEAWVGKNPDVVGDFETTAKWVSYFIAGRISSSNVVSELV
YTLSNMLVFYNDRIIEKARNSEENSVIHLQSKLCYRLKVTLTTLEYSEVF
IEISARRLFGQSGKWLVIALIQAFKAAGRFFILKHSTSDIITSPPIAALN
RRAKQRKNSGDGVASSTNDLLQSQHSITFQLKRSGRVIRKVEGAPPLQYR
DFKLHIDNNEAAKTQIPRKLLQAEYLYISKPLIHLVAMGLFGRRSWKQYM
VALSIDLYSIHLYRQHRDLMSKQQKLELSRRCINIMYFLVRSPFYDSFTK
SRLERILDFVATSVPIAKVVAKPLKDYIPTWQSTYFYLWST*
BS04245.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex16-PA | 341 | CG3947-PA | 1..341 | 1..341 | 1740 | 100 | Plus |
