Clone Sequence Records
BS04246.3prime Sequence
534 bp (533 high quality bases) assembled on 2005-12-01
> BS04246.3prime
ATGGTCTAGAAAGCTTCTAACTGGCCACGGCAATGGCGCAGCTGTGCTGC
TCATTGTTGCTGTTATTGTTATTGCTGGCGCCCGTGTAACTGTTGCTCCC
ATTGTTATTGTTGTTGCATGTGTCTTGGTTGCCATTGTTGCTGCTTAAGC
TACGCATAAAACTGTCGAGGCTACTAAGCTCGCTGCTCCATAAATTGCTT
TCCGCCTCTGCTTCTGCGGCAGCCTTGGTGGTCGAGGTCGCCACTGCAGA
GTACGCGTCACTGGCGCAGTGCGTTCTGCCGTGGGGCACAAACCGTGTTT
GAATGTCCAGCCAGCGACTGAAGCGCTCCTGCTGCTTTCTACGCAGCTCG
TGCTCTGCGTGGAGCAGGGCCGTCGACAAAATGGCGTTCACGCGTAGGTC
GCTGCCAGCGCCTCTTAGCTTGCGACGCATTTTCTGGCGCTTAACGCGGA
AGTTACGGACCCAGTCGGTTAGGGTCTTGGGGTTCTCGGCTGCGTCGCAC
TCGTCGTAGTACGCCACCATGTCGACTGATAACT
BS04246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33229-PA | 504 | CG33229-RA | 1..504 | 520..17 | 2520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33229-RB | 1754 | CG33229-RB | 398..906 | 525..17 | 2530 | 99.8 | Minus |
CG33229-RA | 1500 | CG33229-RA | 144..652 | 525..17 | 2530 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 224249..224757 | 525..17 | 2530 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-06 13:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6837 | 145..45 | 213 | 70.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6824 | 203..41 | 203 | 65.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2419 | 145..34 | 191 | 68.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2512 | 216..45 | 181 | 58.7 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1063..1158 | 153..55 | 172 | 68 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6912 | 145..45 | 161 | 66.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6919 | 222..54 | 158 | 61.5 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1006..1179 | 232..57 | 145 | 57.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2550 | 151..57 | 136 | 64.6 | Minus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2685 | 139..62 | 129 | 62.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1158 | 199..103 | 125 | 58.8 | Minus |
accord2 | 7650 | accord2 QBERT 7650bp | 4407..4493 | 54..140 | 119 | 65.6 | Plus |
BS04246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:39 Download gff for
BS04246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-PA | 1..504 | 17..520 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:33 Download gff for
BS04246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-PA | 1..504 | 17..520 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:53:54 Download gff for
BS04246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 138..652 | 17..534 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:34 Download gff for
BS04246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 138..652 | 17..534 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:34 Download gff for
BS04246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 224243..224757 | 17..534 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:53:54 Download gff for
BS04246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 224243..224757 | 17..534 | 99 | | Minus |
BS04246.5prime Sequence
534 bp (533 high quality bases) assembled on 2005-11-29
> BS04246.5prime
GAAGTTATCAGTCGACATGGTGGCGTACTACGACGAGTGCGACGCAGCCG
AGAACCCCAAGACCCTAACCGACTGGGTCCGTAACTTCCGCGTTAAGCGC
CAGAAAATGCGTCGCAAGCTAAGAGGCGCTGGCAGCGACCTACGCGTGAA
CGCCATTTTGTCGACGGCCCTGCTCCACGCAGAGCACGAGCTGCGTAGAA
AGCAGCAGGAGCGCTTCAGTCGCTGGCTGGACATTCAAACACGGTTTGTG
CCCCACGGCAGAACGCACTGCGCCAGTGACGCGTACTCTGCAGTGGCGAC
CTCGACCACCAAGGCTGCCGCAGAAGCAGAGGCGGAAAGCAATTTATGGA
GCAGCGAGCTTAGTAGCCTCGACAGTTTTATGCGTAGCTTAAGCAGCAAC
AATGGCAACCAAGACACATGCAACAACAATAACAATGGGAGCAACAGTTA
CACGGGCGCCAGCAATAACAATAACAGCAACAATGAGCAGCACAGCTGCG
CCATTGCCGTGGCCAGTTAGAAGCTTTCTAGACC
BS04246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33229-PA | 504 | CG33229-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33229-RB | 1754 | CG33229-RB | 398..906 | 12..520 | 2530 | 99.8 | Plus |
CG33229-RA | 1500 | CG33229-RA | 144..652 | 12..520 | 2530 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 224249..224757 | 12..520 | 2530 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-11 17:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6837 | 392..492 | 213 | 70.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6824 | 334..496 | 203 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2419 | 392..503 | 191 | 68.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2512 | 321..492 | 181 | 58.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1063..1158 | 384..482 | 172 | 68 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6912 | 392..492 | 161 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6919 | 315..483 | 158 | 61.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1006..1179 | 305..480 | 145 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2550 | 386..480 | 136 | 64.6 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2685 | 398..475 | 129 | 62.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1158 | 338..434 | 125 | 58.8 | Plus |
accord2 | 7650 | accord2 QBERT 7650bp | 4407..4493 | 483..397 | 119 | 65.6 | Minus |
BS04246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:40 Download gff for
BS04246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-PA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:34 Download gff for
BS04246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-PA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:28:01 Download gff for
BS04246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 137..652 | 1..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:01 Download gff for
BS04246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 137..652 | 1..520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:01 Download gff for
BS04246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 224242..224757 | 1..520 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:28:01 Download gff for
BS04246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 224242..224757 | 1..520 | 99 | | Plus |
BS04246.complete Sequence
536 bp (536 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634896
> BS04246.complete
GAAGTTATCAGTCGACATGGTGGCGTACTACGACGAGTGCGACGCAGCCG
AGAACCCCAAGACCCTAACCGACTGGGTCCGTAACTTCCGCGTTAAGCGC
CAGAAAATGCGTCGCAAGCTAAGAGGCGCTGGCAGCGACCTACGCGTGAA
CGCCATTTTGTCGACGGCCCTGCTCCACGCAGAGCACGAGCTGCGTAGAA
AGCAGCAGGAGCGCTTCAGTCGCTGGCTGGACATTCAAACACGGTTTGTG
CCCCACGGCAGAACGCACTGCGCCAGTGACGCGTACTCTGCAGTGGCGAC
CTCGACCACCAAGGCTGCCGCAGAAGCAGAGGCGGAAAGCAATTTATGGA
GCAGCGAGCTTAGTAGCCTCGACAGTTTTATGCGTAGCTTAAGCAGCAAC
AATGGCAACCAAGACACATGCAACAACAATAACAATGGGAGCAACAGTTA
CACGGGCGCCAGCAATAACAATAACAGCAACAATGAGCAGCACAGCTGCG
CCATTGCCGTGGCCAGTTAGAAGCTTTCTAGACCAT
BS04246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33229-RB | 504 | CG33229-PB | 1..504 | 17..520 | 2520 | 100 | Plus |
CG33229-RA | 504 | CG33229-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:12:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33229-RB | 1754 | CG33229-RB | 398..906 | 12..520 | 2530 | 99.8 | Plus |
CG33229-RA | 1500 | CG33229-RA | 144..652 | 12..520 | 2530 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:12:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 224249..224757 | 12..520 | 2530 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-27 13:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6837 | 392..492 | 213 | 70.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6824 | 334..496 | 203 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2419 | 392..503 | 191 | 68.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2512 | 321..492 | 181 | 58.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1063..1158 | 384..482 | 172 | 68 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6912 | 392..492 | 161 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6919 | 315..483 | 158 | 61.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1006..1179 | 305..480 | 145 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2550 | 386..480 | 136 | 64.6 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2685 | 398..475 | 129 | 62.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1158 | 338..434 | 125 | 58.8 | Plus |
accord2 | 7650 | accord2 QBERT 7650bp | 4407..4493 | 483..397 | 119 | 65.6 | Minus |
BS04246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:53 Download gff for
BS04246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:02 Download gff for
BS04246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 112..627 | 1..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:51 Download gff for
BS04246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 149..652 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:54 Download gff for
BS04246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 112..627 | 1..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:23 Download gff for
BS04246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 149..652 | 17..520 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:23 Download gff for
BS04246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 224254..224757 | 17..520 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:51 Download gff for
BS04246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 224254..224757 | 17..520 | 100 | | Plus |
BS04246.pep Sequence
Translation from 16 to 519
> BS04246.pep
MVAYYDECDAAENPKTLTDWVRNFRVKRQKMRRKLRGAGSDLRVNAILST
ALLHAEHELRRKQQERFSRWLDIQTRFVPHGRTHCASDAYSAVATSTTKA
AAEAEAESNLWSSELSSLDSFMRSLSSNNGNQDTCNNNNNGSNSYTGASN
NNNSNNEQHSCAIAVAS*
BS04246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33229-PB | 167 | CG33229-PB | 1..167 | 1..167 | 870 | 100 | Plus |
CG33229-PA | 167 | CG33229-PA | 1..167 | 1..167 | 870 | 100 | Plus |