Clone BS04247 Report

Search the DGRC for BS04247

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG12081-RA
Protein status:BS04247.pep: full length peptide match
Sequenced Size:1244

Clone Sequence Records

BS04247.complete Sequence

1244 bp assembled on 2009-12-07

GenBank Submission: KX796048

> BS04247.complete
GAAGTTATCAGTCGACATGCTGTGGACGGTGCATCTGGACGGTGGGCCAC
AGCGGGTCAATCACGCAGCGGTGGGCGTGGGCGACTTCATCTACAGCTTT
GGTGGCTACTGCACCGGATACGATTATCGCTACAATGAGCCCATCGATGT
GCACGCCCTGAATGCACACACAATGCGCTGGACTCTGGTGCCCCAGCAGC
TGGACGACGCGGGTGTGCCACTCAAGTATCCGCTGGTGCCCTTCCAGCGC
TACGGACACACGGTGGTGGCCTACAAGGATCGCATCTACATTTGGGGCGG
TCGCAACGACGAGAATCTCTGCAATACCCTCTACTGCTTCGATCCCAAGA
CAGCGCAGTGGTCGAGGCCCCAGGTCACTGGCTGTCTACCCGGAGCGCGG
GATGGTCACTCGGCCTGTGTCATTGGCAATAGTATGTACATCTTCGGTGG
ATTCGTCGATGAGATCAACGAGTTCAGCAGCGATGTGCATTCCCTTAATC
TGGACACCATGGAGTGGCGCTATGTTCAGACATTTGGCGTGCCGCCCAGC
TACAGAGATTTTCATGCGTCGGTGGCCTACGAACAGGAGCGAATGTACAT
CTTCGGCGGGCGGGGCGATAAGCACAGTCCGTACCACAGCCAGGAGGAGA
CCTACTGTCACGAGATCGTCTACCTGGACATGAAGACCAAGGTGTGGCAT
CGACCGTTCACGGCCGGTAAGGTGCCCGTTGGTCGACGCAGCCACAGCAT
GTTCGTTTACAACAAGCTGATATATGTCTTCGGTGGCTATAATGGCCTGT
TGGATCAGCATTTCAACGATCTGTACACCTTCGATCCGCGCACCAAGCTG
TGGAACCTGATACGGGCCAACGGCAAGGCACCGACGGCGCGTCGGAGACA
GTGCGCCATTGTGATGGGCACTAGGATGTTCCTGTTTGGCGGCACCAGTC
CAAGGAGCGGCTCCTCCAGCTCGCCGGCAGCTGTTTCACCCACTCAAGAG
ACGGGCGGAGCCGCAGCGGCTGGCGGAGTTGTTCCGCCCGGTGTGGCGCT
TATCGACTACAGCGATCTGCATGTGCTCGACTTTGAGCCCACTCTAAAAA
CCCTGGCCACCATGGTGGTGCTCAAGCACCAGCTGGACATCTCGGGGCTG
CCAAGGAGCTTCCGCTCGGACCTGCAGATGCTGACACAGCCGAACAGTAT
TAGCCGGCCCATCAACCAAGCTGGCTAGAAGCTTTCTAGACCAT

BS04247.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12081-RB 1212 CG12081-PB 1..1212 17..1228 6060 100 Plus
CG12081-RA 1212 CG12081-PA 1..1212 17..1228 6060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12081-RB 1964 CG12081-RB 338..1552 14..1228 6075 100 Plus
CG12081-RA 1900 CG12081-RA 338..1552 14..1228 6075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8589148..8590362 14..1228 6075 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:13:04 has no hits.

BS04247.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:02 Download gff for BS04247.complete
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 328..1539 17..1228 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:54 Download gff for BS04247.complete
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 341..1552 17..1228 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:31 Download gff for BS04247.complete
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 328..1539 17..1228 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:34 Download gff for BS04247.complete
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 341..1552 17..1228 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:34 Download gff for BS04247.complete
Subject Subject Range Query Range Percent Splice Strand
X 8589151..8590362 17..1228 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:54 Download gff for BS04247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8483184..8484395 17..1228 100   Plus

BS04247.3prime Sequence

591 bp (428 high quality bases) assembled on 2005-12-01

> BS04247.3prime
ATGGTCTAGAAAGCTTCTAGCCAGCTTGGTTGATGGGCCGGCTAATACTG
TTCGGCTGTGTCAGCATCTGCAGGTCCGAGCGGAAGCTCCTTGGCAGCCC
CGAGATGTCCAGCTGGTGCTTGAGCACCACCATGGTGGCCAGGGTTTTTA
GAGTGGGCTCAAAGTCGAGCACATGCAGATCGCTGTAGTCGATAAGCGCC
ACACCGGGCGGAACAACTCCGCCAGCCGCTGCGGCTCCGCCCGTCTCTTG
AGTGGGTGAAACAGCTGCCGGCGAGCTGGAGGAGCCGCTCCTTGGACTGG
TGCCGCCAAACAGGAACATCCTAGTGCCCATCACAATGGCGCACTGTCTC
CGACGCGCCGTCGGTGCCTTGCCGTTGGCCCGTATCAGGTTCCACAGCTT
GGTGCGCGGATCGAAGGTGTACAGATCGTTGAAATGCTGATCCCACAGGC
CATTATAGCCACCGAAGACATATATCAGCTTGTTGTAAACGAACATGCTG
TGGCTGCGTCGACCAACGGGCACTTACCGGCCGTGAACGGTCGATGCCAC
ACCTTGGTCTTCATGTCCACGTAGACAATCTCGTGACAGTA

BS04247.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12081-PA 1212 CG12081-RA 706..1212 523..17 2510 99.8 Minus
CG12081-PA 1212 CG12081-RA 637..705 591..523 295 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12081-RB 1964 CG12081-RB 977..1552 591..17 2810 99.3 Minus
CG12081-RA 1900 CG12081-RA 977..1552 591..17 2810 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8589787..8590362 591..17 2785 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 18:50:16 has no hits.

BS04247.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:41 Download gff for BS04247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12081-PA 638..1212 17..590 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:35 Download gff for BS04247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12081-PA 638..1212 17..590 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:14 Download gff for BS04247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 978..1552 17..590 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:38:57 Download gff for BS04247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 978..1552 17..590 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:38:57 Download gff for BS04247.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8589788..8590362 17..590 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:14 Download gff for BS04247.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8483821..8484395 17..590 99   Minus

BS04247.5prime Sequence

462 bp (446 high quality bases) assembled on 2005-12-01

> BS04247.5prime
GAAGTTATCAGTCGACATGCTGTGGACGGTGCATCTGGACGGTGGGCCAC
AGCGGGTCAATCACGCAGCGGTGGGCGTGGGCGACTTCATCTACAGCTTT
GGTGGCTACTGCACCGGATACGATTATCGCTACAATGAGCCCATCGATGT
GCACGCCCTGAATGCACACACAATGCGCTGGACTCTGGTGCCCCAGCAGC
TGGACGACGCGGGTGTGCCACTCAAGTATCCGCTGGTGCCCTTCCAGCGC
TACGGACACACGGTGGTGGCCTACAAGGATCGCATCTACATTTGGGGCGG
TCGCAACGACGAGAATCTCTGCAATACCCTCTACTGCTTCGATCCCAAGA
CAGCGCAGTGGTCGAGGCCCCAGGTCACTGGCTGTCTACCCGGAGCGCGG
GATGGTCACTCGGCCTGTGTCATTGGCAATAGTATGTACATCTTCGGTGG
ATTCGTCGATGA

BS04247.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12081-PA 1212 CG12081-RA 1..446 17..462 2230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12081-RB 1964 CG12081-RB 338..786 14..462 2245 100 Plus
CG12081-RA 1900 CG12081-RA 338..786 14..462 2245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8589148..8589596 14..462 2245 100 Plus
Blast to na_te.dros performed on 2015-02-10 01:58:54 has no hits.

BS04247.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:42 Download gff for BS04247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12081-PA 1..445 17..461 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:37 Download gff for BS04247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12081-PA 1..445 17..461 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:09 Download gff for BS04247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 335..785 9..461 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:04:43 Download gff for BS04247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 335..785 9..461 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:04:43 Download gff for BS04247.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8589145..8589595 9..461 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:09 Download gff for BS04247.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8483178..8483628 9..461 99   Plus

BS04247.pep Sequence

Translation from 16 to 1227

> BS04247.pep
MLWTVHLDGGPQRVNHAAVGVGDFIYSFGGYCTGYDYRYNEPIDVHALNA
HTMRWTLVPQQLDDAGVPLKYPLVPFQRYGHTVVAYKDRIYIWGGRNDEN
LCNTLYCFDPKTAQWSRPQVTGCLPGARDGHSACVIGNSMYIFGGFVDEI
NEFSSDVHSLNLDTMEWRYVQTFGVPPSYRDFHASVAYEQERMYIFGGRG
DKHSPYHSQEETYCHEIVYLDMKTKVWHRPFTAGKVPVGRRSHSMFVYNK
LIYVFGGYNGLLDQHFNDLYTFDPRTKLWNLIRANGKAPTARRRQCAIVM
GTRMFLFGGTSPRSGSSSSPAAVSPTQETGGAAAAGGVVPPGVALIDYSD
LHVLDFEPTLKTLATMVVLKHQLDISGLPRSFRSDLQMLTQPNSISRPIN
QAG*

BS04247.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12081-PB 403 CG12081-PB 1..403 1..403 2198 100 Plus
CG12081-PA 403 CG12081-PA 1..403 1..403 2198 100 Plus
CG3711-PE 975 CG3711-PE 251..541 77..314 254 27.5 Plus
CG3711-PD 998 CG3711-PD 251..541 77..314 254 27.5 Plus
Hcf-PF 1448 CG1710-PF 71..317 75..312 243 25.7 Plus
CG3711-PE 975 CG3711-PE 302..536 13..257 164 25.3 Plus
CG3711-PD 998 CG3711-PD 302..536 13..257 164 25.3 Plus
CG3711-PE 975 CG3711-PE 464..539 75..148 161 42.1 Plus
CG3711-PD 998 CG3711-PD 464..539 75..148 161 42.1 Plus