Clone Sequence Records
BS04247.complete Sequence
1244 bp assembled on 2009-12-07
GenBank Submission: KX796048
> BS04247.complete
GAAGTTATCAGTCGACATGCTGTGGACGGTGCATCTGGACGGTGGGCCAC
AGCGGGTCAATCACGCAGCGGTGGGCGTGGGCGACTTCATCTACAGCTTT
GGTGGCTACTGCACCGGATACGATTATCGCTACAATGAGCCCATCGATGT
GCACGCCCTGAATGCACACACAATGCGCTGGACTCTGGTGCCCCAGCAGC
TGGACGACGCGGGTGTGCCACTCAAGTATCCGCTGGTGCCCTTCCAGCGC
TACGGACACACGGTGGTGGCCTACAAGGATCGCATCTACATTTGGGGCGG
TCGCAACGACGAGAATCTCTGCAATACCCTCTACTGCTTCGATCCCAAGA
CAGCGCAGTGGTCGAGGCCCCAGGTCACTGGCTGTCTACCCGGAGCGCGG
GATGGTCACTCGGCCTGTGTCATTGGCAATAGTATGTACATCTTCGGTGG
ATTCGTCGATGAGATCAACGAGTTCAGCAGCGATGTGCATTCCCTTAATC
TGGACACCATGGAGTGGCGCTATGTTCAGACATTTGGCGTGCCGCCCAGC
TACAGAGATTTTCATGCGTCGGTGGCCTACGAACAGGAGCGAATGTACAT
CTTCGGCGGGCGGGGCGATAAGCACAGTCCGTACCACAGCCAGGAGGAGA
CCTACTGTCACGAGATCGTCTACCTGGACATGAAGACCAAGGTGTGGCAT
CGACCGTTCACGGCCGGTAAGGTGCCCGTTGGTCGACGCAGCCACAGCAT
GTTCGTTTACAACAAGCTGATATATGTCTTCGGTGGCTATAATGGCCTGT
TGGATCAGCATTTCAACGATCTGTACACCTTCGATCCGCGCACCAAGCTG
TGGAACCTGATACGGGCCAACGGCAAGGCACCGACGGCGCGTCGGAGACA
GTGCGCCATTGTGATGGGCACTAGGATGTTCCTGTTTGGCGGCACCAGTC
CAAGGAGCGGCTCCTCCAGCTCGCCGGCAGCTGTTTCACCCACTCAAGAG
ACGGGCGGAGCCGCAGCGGCTGGCGGAGTTGTTCCGCCCGGTGTGGCGCT
TATCGACTACAGCGATCTGCATGTGCTCGACTTTGAGCCCACTCTAAAAA
CCCTGGCCACCATGGTGGTGCTCAAGCACCAGCTGGACATCTCGGGGCTG
CCAAGGAGCTTCCGCTCGGACCTGCAGATGCTGACACAGCCGAACAGTAT
TAGCCGGCCCATCAACCAAGCTGGCTAGAAGCTTTCTAGACCAT
BS04247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12081-RB | 1212 | CG12081-PB | 1..1212 | 17..1228 | 6060 | 100 | Plus |
CG12081-RA | 1212 | CG12081-PA | 1..1212 | 17..1228 | 6060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12081-RB | 1964 | CG12081-RB | 338..1552 | 14..1228 | 6075 | 100 | Plus |
CG12081-RA | 1900 | CG12081-RA | 338..1552 | 14..1228 | 6075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8589148..8590362 | 14..1228 | 6075 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:13:04 has no hits.
BS04247.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:02 Download gff for
BS04247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12081-RA | 328..1539 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:54 Download gff for
BS04247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12081-RA | 341..1552 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:31 Download gff for
BS04247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12081-RA | 328..1539 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:34 Download gff for
BS04247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12081-RA | 341..1552 | 17..1228 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:34 Download gff for
BS04247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8589151..8590362 | 17..1228 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:54 Download gff for
BS04247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8483184..8484395 | 17..1228 | 100 | | Plus |
BS04247.3prime Sequence
591 bp (428 high quality bases) assembled on 2005-12-01
> BS04247.3prime
ATGGTCTAGAAAGCTTCTAGCCAGCTTGGTTGATGGGCCGGCTAATACTG
TTCGGCTGTGTCAGCATCTGCAGGTCCGAGCGGAAGCTCCTTGGCAGCCC
CGAGATGTCCAGCTGGTGCTTGAGCACCACCATGGTGGCCAGGGTTTTTA
GAGTGGGCTCAAAGTCGAGCACATGCAGATCGCTGTAGTCGATAAGCGCC
ACACCGGGCGGAACAACTCCGCCAGCCGCTGCGGCTCCGCCCGTCTCTTG
AGTGGGTGAAACAGCTGCCGGCGAGCTGGAGGAGCCGCTCCTTGGACTGG
TGCCGCCAAACAGGAACATCCTAGTGCCCATCACAATGGCGCACTGTCTC
CGACGCGCCGTCGGTGCCTTGCCGTTGGCCCGTATCAGGTTCCACAGCTT
GGTGCGCGGATCGAAGGTGTACAGATCGTTGAAATGCTGATCCCACAGGC
CATTATAGCCACCGAAGACATATATCAGCTTGTTGTAAACGAACATGCTG
TGGCTGCGTCGACCAACGGGCACTTACCGGCCGTGAACGGTCGATGCCAC
ACCTTGGTCTTCATGTCCACGTAGACAATCTCGTGACAGTA
BS04247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12081-PA | 1212 | CG12081-RA | 706..1212 | 523..17 | 2510 | 99.8 | Minus |
CG12081-PA | 1212 | CG12081-RA | 637..705 | 591..523 | 295 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12081-RB | 1964 | CG12081-RB | 977..1552 | 591..17 | 2810 | 99.3 | Minus |
CG12081-RA | 1900 | CG12081-RA | 977..1552 | 591..17 | 2810 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8589787..8590362 | 591..17 | 2785 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:50:16 has no hits.
BS04247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:41 Download gff for
BS04247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12081-PA | 638..1212 | 17..590 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:35 Download gff for
BS04247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12081-PA | 638..1212 | 17..590 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:14 Download gff for
BS04247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12081-RA | 978..1552 | 17..590 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:38:57 Download gff for
BS04247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12081-RA | 978..1552 | 17..590 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:38:57 Download gff for
BS04247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8589788..8590362 | 17..590 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:14 Download gff for
BS04247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8483821..8484395 | 17..590 | 99 | | Minus |
BS04247.5prime Sequence
462 bp (446 high quality bases) assembled on 2005-12-01
> BS04247.5prime
GAAGTTATCAGTCGACATGCTGTGGACGGTGCATCTGGACGGTGGGCCAC
AGCGGGTCAATCACGCAGCGGTGGGCGTGGGCGACTTCATCTACAGCTTT
GGTGGCTACTGCACCGGATACGATTATCGCTACAATGAGCCCATCGATGT
GCACGCCCTGAATGCACACACAATGCGCTGGACTCTGGTGCCCCAGCAGC
TGGACGACGCGGGTGTGCCACTCAAGTATCCGCTGGTGCCCTTCCAGCGC
TACGGACACACGGTGGTGGCCTACAAGGATCGCATCTACATTTGGGGCGG
TCGCAACGACGAGAATCTCTGCAATACCCTCTACTGCTTCGATCCCAAGA
CAGCGCAGTGGTCGAGGCCCCAGGTCACTGGCTGTCTACCCGGAGCGCGG
GATGGTCACTCGGCCTGTGTCATTGGCAATAGTATGTACATCTTCGGTGG
ATTCGTCGATGA
BS04247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12081-PA | 1212 | CG12081-RA | 1..446 | 17..462 | 2230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12081-RB | 1964 | CG12081-RB | 338..786 | 14..462 | 2245 | 100 | Plus |
CG12081-RA | 1900 | CG12081-RA | 338..786 | 14..462 | 2245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:58:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8589148..8589596 | 14..462 | 2245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 01:58:54 has no hits.
BS04247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:42 Download gff for
BS04247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12081-PA | 1..445 | 17..461 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:37 Download gff for
BS04247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12081-PA | 1..445 | 17..461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:09 Download gff for
BS04247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12081-RA | 335..785 | 9..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:04:43 Download gff for
BS04247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12081-RA | 335..785 | 9..461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:04:43 Download gff for
BS04247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8589145..8589595 | 9..461 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:09 Download gff for
BS04247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8483178..8483628 | 9..461 | 99 | | Plus |
BS04247.pep Sequence
Translation from 16 to 1227
> BS04247.pep
MLWTVHLDGGPQRVNHAAVGVGDFIYSFGGYCTGYDYRYNEPIDVHALNA
HTMRWTLVPQQLDDAGVPLKYPLVPFQRYGHTVVAYKDRIYIWGGRNDEN
LCNTLYCFDPKTAQWSRPQVTGCLPGARDGHSACVIGNSMYIFGGFVDEI
NEFSSDVHSLNLDTMEWRYVQTFGVPPSYRDFHASVAYEQERMYIFGGRG
DKHSPYHSQEETYCHEIVYLDMKTKVWHRPFTAGKVPVGRRSHSMFVYNK
LIYVFGGYNGLLDQHFNDLYTFDPRTKLWNLIRANGKAPTARRRQCAIVM
GTRMFLFGGTSPRSGSSSSPAAVSPTQETGGAAAAGGVVPPGVALIDYSD
LHVLDFEPTLKTLATMVVLKHQLDISGLPRSFRSDLQMLTQPNSISRPIN
QAG*
BS04247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12081-PB | 403 | CG12081-PB | 1..403 | 1..403 | 2198 | 100 | Plus |
CG12081-PA | 403 | CG12081-PA | 1..403 | 1..403 | 2198 | 100 | Plus |
CG3711-PE | 975 | CG3711-PE | 251..541 | 77..314 | 254 | 27.5 | Plus |
CG3711-PD | 998 | CG3711-PD | 251..541 | 77..314 | 254 | 27.5 | Plus |
Hcf-PF | 1448 | CG1710-PF | 71..317 | 75..312 | 243 | 25.7 | Plus |
CG3711-PE | 975 | CG3711-PE | 302..536 | 13..257 | 164 | 25.3 | Plus |
CG3711-PD | 998 | CG3711-PD | 302..536 | 13..257 | 164 | 25.3 | Plus |
CG3711-PE | 975 | CG3711-PE | 464..539 | 75..148 | 161 | 42.1 | Plus |
CG3711-PD | 998 | CG3711-PD | 464..539 | 75..148 | 161 | 42.1 | Plus |