Clone BS04249 Report

Search the DGRC for BS04249

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:49
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)j2D3-RA
Protein status:BS04249.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04249.3prime Sequence

900 bp (874 high quality bases) assembled on 2005-12-01

> BS04249.3prime
ATGGTCTAGAAAGCTTCTACTGATTGTTATGCTTAAGCAAATAAACAATA
TCTTTGTGAAATGCGTTTAGCTCCAGCAGTGCATCCTTCATAACCTGCAG
CTTTTCTCGCTCGATCGCCAGTTTTTCCTCCTCTATTTCAAGGAGTCTGT
CCGAATGGTTGTTCGATGCTTTCCGTTTTGTCTGACATTTTGAAATTGGC
GATGGGGAGAGATCCTTCATGTGGTCATCATCCTCCTCCTCCTCCTCCTC
CTCCTCGTCTTCTTCCGGGATTTCCGGAATACTGGGAGAGGGAGTTCGCG
TTCTTTTCATGGCTTTGCTAGCAACCATATCACTTTCGAATACGTTCCCA
TCGTCCCCGGCCATAGGCTCGTCTTTTAATGAAGACAATTCCTCAGGCTC
ATAATCCTCATCGCTGAACAAAGCTTGAGCTGGATTTTCGGCGGTAATAT
CTTCGAAGACATCAACTGATTTCGTGCCAATCAGAAGTGCTTGAAGCTTA
TGAAAGTGCTCCCACTTGGATGGCACTCCAGTTTCCCGAACTCTCTCAGC
TTCTATTCTATACTTTCGCGACAAATTGTCCATTTTGGTTTTAAGCTCCG
TGTGGCTGGGCCCAAACTGACTCATCTCCCTAGCCATTTGCCGGTAGATG
ATCACATTCTTGGACTCTCCACGAAAATCCTTCAAATGCTGTGCCCACAG
TTGCAGCAACATCTTCTCCGCATCCTTTTTCCAAACGTGTCGCTCCGTTT
TCGTATAGTAGTCCTCAAACTTTTCCTCCTTGCCAACATTCTTGGGCAAT
GGCGAGATGCCATTGGCTCGGATCGCTGGCTCAACGACCATTTTCTGTGC
AACGTTTATCTTGGCGGTTCGCTGTGGTCCCGTCGGTGATCCTTCATCGC

BS04249.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6801-PA 1176 l(3)j2D3-RA 293..1176 900..17 4420 100 Minus
CG2984-PA 4284 Pp2C1-RA 1989..2024 266..231 155 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)j2D3-RA 1513 CG6801-RA 424..1307 900..17 4420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12117434..12117849 432..17 2080 100 Minus
3L 28110227 3L 12116828..12117170 900..558 1715 100 Minus
3L 28110227 3L 12117242..12117371 559..430 650 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:40:04 has no hits.

BS04249.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:44 Download gff for BS04249.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6801-PA 293..1176 17..900 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:42 Download gff for BS04249.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6801-PA 293..1176 17..900 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:19 Download gff for BS04249.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 424..1307 17..900 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:16 Download gff for BS04249.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 424..1307 17..900 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:16 Download gff for BS04249.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12116828..12117170 558..900 100 -> Minus
3L 12117244..12117371 430..557 100 -> Minus
3L 12117437..12117849 17..429 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:19 Download gff for BS04249.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12109928..12110270 558..900 100 -> Minus
arm_3L 12110344..12110471 430..557 100 -> Minus
arm_3L 12110537..12110949 17..429 100   Minus

BS04249.5prime Sequence

912 bp (755 high quality bases) assembled on 2005-12-01

> BS04249.5prime
GAAGTTATCAGTCGACATGCCGTCCAGAAATATTGACGATGCCGCCGGCG
CCAAGGAGGTTCACCGAAGTACAAGGAATTCACTGATCGGCCCGAAGAGC
AAGCGAATCGCCCTAAACAGTCGCAATCGCAGTCTTGCTGCCGCCGAAAA
GAAAACTCAGTCGCAGCTGTCATTCCCGCCAAAATCGGAGTACGAGAAGT
TCTACGAGACCGTCTTCCTGGCGGAGGATTTGCAGCCGGAGGAAAATATA
ACACCAGAACGTCGTAAGCCAGGACCGCGCATGAAGAGCTCACTCCAAGC
CCTGTTGAGCGATGAAGGATCACCGACGGGACCACAGCGAACCGCCAAGA
TAAACGTTGCACAGAAAATGGTCGTTGAGCCAGCGATCCGAGCCAATGGC
ATCTCGCCATTGCCCAAGAATGTTGGCAAGGAGGAAAAGTTTGAGGACTA
CTATACGAAAACGGAGCGACACGTTTGGAAAAAGGATGCGGAGAAGATGT
TGCTGCAACTGTGGGCACAGCATTTGAAGGATTTTCGTGGAGAGTCCAAG
AATGTGATCATCTACCGGCAAATGGCTAGGGAGATGAGTCAGTTTGGGCC
CAGCCACACGGAGCTTAAAACCAAAATGGACAATTTGTCGCGAAAGTATA
GAATAGAAGCTGAGAGAGTTCGGGAAACTGGAGTGCCATCCAAGTGGGAG
CACTTTCATAAGCTTCAAGCACTTCTGATTGGCACGAAATCAGTTGATGT
CTTCGAAGATATTACCGCCGAAAATCCAGCTCAAGCTTTGTTCAGCGATG
AGGATTATGAGCCTGAGGAATTGTCTTCATTAAAAGACGAGCCTATGGCC
GGGGACGATGGGAACGTATTCGAAAGTGATATGGTTGCTAGCAAAGCCAT
GAAAAGAACGCG

BS04249.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6801-PA 1176 l(3)j2D3-RA 1..896 17..912 4480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)j2D3-RA 1513 CG6801-RA 132..1027 17..912 4480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12116764..12117170 245..651 2035 100 Plus
3L 28110227 3L 12116232..12116459 17..244 1140 100 Plus
3L 28110227 3L 12117434..12117569 777..912 680 100 Plus
3L 28110227 3L 12117242..12117371 650..779 650 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:53:01 has no hits.

BS04249.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:45 Download gff for BS04249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6801-PA 1..896 17..912 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:43 Download gff for BS04249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6801-PA 1..896 17..912 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:34:39 Download gff for BS04249.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 132..1027 17..912 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:14 Download gff for BS04249.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 132..1027 17..912 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:14 Download gff for BS04249.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12116232..12116459 17..244 100 -> Plus
3L 12116764..12117170 245..651 100 -> Plus
3L 12117244..12117371 652..779 100 -> Plus
3L 12117437..12117569 780..912 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:34:39 Download gff for BS04249.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12110537..12110669 780..912 100   Plus
arm_3L 12110344..12110471 652..779 100 -> Plus
arm_3L 12109332..12109559 17..244 100 -> Plus
arm_3L 12109864..12110270 245..651 100 -> Plus

BS04249.complete Sequence

1208 bp (1208 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634897

> BS04249.complete
GAAGTTATCAGTCGACATGCCGTCCAGAAATATTGACGATGCCGCCGGCG
CCAAGGAGGTTCACCGAAGTACAAGGAATTCACTGATCGGCCCGAAGAGC
AAGCGAATCGCCCTAAACAGTCGCAATCGCAGTCTTGCTGCCGCCGAAAA
GAAAACTCAGTCGCAGCTGTCATTCCCGCCAAAATCGGAGTACGAGAAGT
TCTACGAGACCGTCTTCCTGGCGGAGGATTTGCAGCCGGAGGAAAATATA
ACACCAGAACGTCGTAAGCCAGGACCGCGCATGAAGAGCTCACTCCAAGC
CCTGTTGAGCGATGAAGGATCACCGACGGGACCACAGCGAACCGCCAAGA
TAAACGTTGCACAGAAAATGGTCGTTGAGCCAGCGATCCGAGCCAATGGC
ATCTCGCCATTGCCCAAGAATGTTGGCAAGGAGGAAAAGTTTGAGGACTA
CTATACGAAAACGGAGCGACACGTTTGGAAAAAGGATGCGGAGAAGATGT
TGCTGCAACTGTGGGCACAGCATTTGAAGGATTTTCGTGGAGAGTCCAAG
AATGTGATCATCTACCGGCAAATGGCTAGGGAGATGAGTCAGTTTGGGCC
CAGCCACACGGAGCTTAAAACCAAAATGGACAATTTGTCGCGAAAGTATA
GAATAGAAGCTGAGAGAGTTCGGGAAACTGGAGTGCCATCCAAGTGGGAG
CACTTTCATAAGCTTCAAGCACTTCTGATTGGCACGAAATCAGTTGATGT
CTTCGAAGATATTACCGCCGAAAATCCAGCTCAAGCTTTGTTCAGCGATG
AGGATTATGAGCCTGAGGAATTGTCTTCATTAAAAGACGAGCCTATGGCC
GGGGACGATGGGAACGTATTCGAAAGTGATATGGTTGCTAGCAAAGCCAT
GAAAAGAACGCGAACTCCCTCTCCCAGTATTCCGGAAATCCCGGAAGAAG
ACGAGGAGGAGGAGGAGGAGGAGGAGGATGATGACCACATGAAGGATCTC
TCCCCATCGCCAATTTCAAAATGTCAGACAAAACGGAAAGCATCGAACAA
CCATTCGGACAGACTCCTTGAAATAGAGGAGGAAAAACTGGCGATCGAGC
GAGAAAAGCTGCAGGTTATGAAGGATGCACTGCTGGAGCTAAACGCATTT
CACAAAGATATTGTTTATTTGCTTAAGCATAACAATCAGTAGAAGCTTTC
TAGACCAT

BS04249.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)j2D3-RA 1176 CG6801-PA 1..1176 17..1192 5880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)j2D3-RA 1513 CG6801-RA 132..1307 17..1192 5880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12117434..12117849 777..1192 2080 100 Plus
3L 28110227 3L 12116764..12117170 245..651 2035 100 Plus
3L 28110227 3L 12116232..12116459 17..244 1140 100 Plus
3L 28110227 3L 12117242..12117371 650..779 650 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:40:35 has no hits.

BS04249.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:38 Download gff for BS04249.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 1..1176 17..1192 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:57 Download gff for BS04249.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 97..1272 17..1192 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:50 Download gff for BS04249.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 132..1307 17..1192 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:38 Download gff for BS04249.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 97..1272 17..1192 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:23 Download gff for BS04249.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 132..1307 17..1192 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:23 Download gff for BS04249.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12116232..12116459 17..244 100 -> Plus
3L 12116764..12117170 245..651 100 -> Plus
3L 12117244..12117371 652..779 100 -> Plus
3L 12117437..12117849 780..1192 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:50 Download gff for BS04249.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12109332..12109559 17..244 100 -> Plus
arm_3L 12109864..12110270 245..651 100 -> Plus
arm_3L 12110344..12110471 652..779 100 -> Plus
arm_3L 12110537..12110949 780..1192 100   Plus

BS04249.pep Sequence

Translation from 16 to 1191

> BS04249.pep
MPSRNIDDAAGAKEVHRSTRNSLIGPKSKRIALNSRNRSLAAAEKKTQSQ
LSFPPKSEYEKFYETVFLAEDLQPEENITPERRKPGPRMKSSLQALLSDE
GSPTGPQRTAKINVAQKMVVEPAIRANGISPLPKNVGKEEKFEDYYTKTE
RHVWKKDAEKMLLQLWAQHLKDFRGESKNVIIYRQMAREMSQFGPSHTEL
KTKMDNLSRKYRIEAERVRETGVPSKWEHFHKLQALLIGTKSVDVFEDIT
AENPAQALFSDEDYEPEELSSLKDEPMAGDDGNVFESDMVASKAMKRTRT
PSPSIPEIPEEDEEEEEEEEDDDHMKDLSPSPISKCQTKRKASNNHSDRL
LEIEEEKLAIEREKLQVMKDALLELNAFHKDIVYLLKHNNQ*

BS04249.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)j2D3-PA 391 CG6801-PA 1..391 1..391 2010 100 Plus
ssp-PA 368 CG17153-PA 121..361 154..388 270 29.4 Plus