Clone Sequence Records
BS04249.3prime Sequence
900 bp (874 high quality bases) assembled on 2005-12-01
> BS04249.3prime
ATGGTCTAGAAAGCTTCTACTGATTGTTATGCTTAAGCAAATAAACAATA
TCTTTGTGAAATGCGTTTAGCTCCAGCAGTGCATCCTTCATAACCTGCAG
CTTTTCTCGCTCGATCGCCAGTTTTTCCTCCTCTATTTCAAGGAGTCTGT
CCGAATGGTTGTTCGATGCTTTCCGTTTTGTCTGACATTTTGAAATTGGC
GATGGGGAGAGATCCTTCATGTGGTCATCATCCTCCTCCTCCTCCTCCTC
CTCCTCGTCTTCTTCCGGGATTTCCGGAATACTGGGAGAGGGAGTTCGCG
TTCTTTTCATGGCTTTGCTAGCAACCATATCACTTTCGAATACGTTCCCA
TCGTCCCCGGCCATAGGCTCGTCTTTTAATGAAGACAATTCCTCAGGCTC
ATAATCCTCATCGCTGAACAAAGCTTGAGCTGGATTTTCGGCGGTAATAT
CTTCGAAGACATCAACTGATTTCGTGCCAATCAGAAGTGCTTGAAGCTTA
TGAAAGTGCTCCCACTTGGATGGCACTCCAGTTTCCCGAACTCTCTCAGC
TTCTATTCTATACTTTCGCGACAAATTGTCCATTTTGGTTTTAAGCTCCG
TGTGGCTGGGCCCAAACTGACTCATCTCCCTAGCCATTTGCCGGTAGATG
ATCACATTCTTGGACTCTCCACGAAAATCCTTCAAATGCTGTGCCCACAG
TTGCAGCAACATCTTCTCCGCATCCTTTTTCCAAACGTGTCGCTCCGTTT
TCGTATAGTAGTCCTCAAACTTTTCCTCCTTGCCAACATTCTTGGGCAAT
GGCGAGATGCCATTGGCTCGGATCGCTGGCTCAACGACCATTTTCTGTGC
AACGTTTATCTTGGCGGTTCGCTGTGGTCCCGTCGGTGATCCTTCATCGC
BS04249.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6801-PA | 1176 | l(3)j2D3-RA | 293..1176 | 900..17 | 4420 | 100 | Minus |
CG2984-PA | 4284 | Pp2C1-RA | 1989..2024 | 266..231 | 155 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)j2D3-RA | 1513 | CG6801-RA | 424..1307 | 900..17 | 4420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12117434..12117849 | 432..17 | 2080 | 100 | Minus |
3L | 28110227 | 3L | 12116828..12117170 | 900..558 | 1715 | 100 | Minus |
3L | 28110227 | 3L | 12117242..12117371 | 559..430 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:40:04 has no hits.
BS04249.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:44 Download gff for
BS04249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6801-PA | 293..1176 | 17..900 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:42 Download gff for
BS04249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6801-PA | 293..1176 | 17..900 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:19 Download gff for
BS04249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 424..1307 | 17..900 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:16 Download gff for
BS04249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 424..1307 | 17..900 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:16 Download gff for
BS04249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12116828..12117170 | 558..900 | 100 | -> | Minus |
3L | 12117244..12117371 | 430..557 | 100 | -> | Minus |
3L | 12117437..12117849 | 17..429 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:19 Download gff for
BS04249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12109928..12110270 | 558..900 | 100 | -> | Minus |
arm_3L | 12110344..12110471 | 430..557 | 100 | -> | Minus |
arm_3L | 12110537..12110949 | 17..429 | 100 | | Minus |
BS04249.5prime Sequence
912 bp (755 high quality bases) assembled on 2005-12-01
> BS04249.5prime
GAAGTTATCAGTCGACATGCCGTCCAGAAATATTGACGATGCCGCCGGCG
CCAAGGAGGTTCACCGAAGTACAAGGAATTCACTGATCGGCCCGAAGAGC
AAGCGAATCGCCCTAAACAGTCGCAATCGCAGTCTTGCTGCCGCCGAAAA
GAAAACTCAGTCGCAGCTGTCATTCCCGCCAAAATCGGAGTACGAGAAGT
TCTACGAGACCGTCTTCCTGGCGGAGGATTTGCAGCCGGAGGAAAATATA
ACACCAGAACGTCGTAAGCCAGGACCGCGCATGAAGAGCTCACTCCAAGC
CCTGTTGAGCGATGAAGGATCACCGACGGGACCACAGCGAACCGCCAAGA
TAAACGTTGCACAGAAAATGGTCGTTGAGCCAGCGATCCGAGCCAATGGC
ATCTCGCCATTGCCCAAGAATGTTGGCAAGGAGGAAAAGTTTGAGGACTA
CTATACGAAAACGGAGCGACACGTTTGGAAAAAGGATGCGGAGAAGATGT
TGCTGCAACTGTGGGCACAGCATTTGAAGGATTTTCGTGGAGAGTCCAAG
AATGTGATCATCTACCGGCAAATGGCTAGGGAGATGAGTCAGTTTGGGCC
CAGCCACACGGAGCTTAAAACCAAAATGGACAATTTGTCGCGAAAGTATA
GAATAGAAGCTGAGAGAGTTCGGGAAACTGGAGTGCCATCCAAGTGGGAG
CACTTTCATAAGCTTCAAGCACTTCTGATTGGCACGAAATCAGTTGATGT
CTTCGAAGATATTACCGCCGAAAATCCAGCTCAAGCTTTGTTCAGCGATG
AGGATTATGAGCCTGAGGAATTGTCTTCATTAAAAGACGAGCCTATGGCC
GGGGACGATGGGAACGTATTCGAAAGTGATATGGTTGCTAGCAAAGCCAT
GAAAAGAACGCG
BS04249.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6801-PA | 1176 | l(3)j2D3-RA | 1..896 | 17..912 | 4480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)j2D3-RA | 1513 | CG6801-RA | 132..1027 | 17..912 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12116764..12117170 | 245..651 | 2035 | 100 | Plus |
3L | 28110227 | 3L | 12116232..12116459 | 17..244 | 1140 | 100 | Plus |
3L | 28110227 | 3L | 12117434..12117569 | 777..912 | 680 | 100 | Plus |
3L | 28110227 | 3L | 12117242..12117371 | 650..779 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:53:01 has no hits.
BS04249.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:45 Download gff for
BS04249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6801-PA | 1..896 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:43 Download gff for
BS04249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6801-PA | 1..896 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:34:39 Download gff for
BS04249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 132..1027 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:14 Download gff for
BS04249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 132..1027 | 17..912 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:14 Download gff for
BS04249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12116232..12116459 | 17..244 | 100 | -> | Plus |
3L | 12116764..12117170 | 245..651 | 100 | -> | Plus |
3L | 12117244..12117371 | 652..779 | 100 | -> | Plus |
3L | 12117437..12117569 | 780..912 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:34:39 Download gff for
BS04249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12110537..12110669 | 780..912 | 100 | | Plus |
arm_3L | 12110344..12110471 | 652..779 | 100 | -> | Plus |
arm_3L | 12109332..12109559 | 17..244 | 100 | -> | Plus |
arm_3L | 12109864..12110270 | 245..651 | 100 | -> | Plus |
BS04249.complete Sequence
1208 bp (1208 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634897
> BS04249.complete
GAAGTTATCAGTCGACATGCCGTCCAGAAATATTGACGATGCCGCCGGCG
CCAAGGAGGTTCACCGAAGTACAAGGAATTCACTGATCGGCCCGAAGAGC
AAGCGAATCGCCCTAAACAGTCGCAATCGCAGTCTTGCTGCCGCCGAAAA
GAAAACTCAGTCGCAGCTGTCATTCCCGCCAAAATCGGAGTACGAGAAGT
TCTACGAGACCGTCTTCCTGGCGGAGGATTTGCAGCCGGAGGAAAATATA
ACACCAGAACGTCGTAAGCCAGGACCGCGCATGAAGAGCTCACTCCAAGC
CCTGTTGAGCGATGAAGGATCACCGACGGGACCACAGCGAACCGCCAAGA
TAAACGTTGCACAGAAAATGGTCGTTGAGCCAGCGATCCGAGCCAATGGC
ATCTCGCCATTGCCCAAGAATGTTGGCAAGGAGGAAAAGTTTGAGGACTA
CTATACGAAAACGGAGCGACACGTTTGGAAAAAGGATGCGGAGAAGATGT
TGCTGCAACTGTGGGCACAGCATTTGAAGGATTTTCGTGGAGAGTCCAAG
AATGTGATCATCTACCGGCAAATGGCTAGGGAGATGAGTCAGTTTGGGCC
CAGCCACACGGAGCTTAAAACCAAAATGGACAATTTGTCGCGAAAGTATA
GAATAGAAGCTGAGAGAGTTCGGGAAACTGGAGTGCCATCCAAGTGGGAG
CACTTTCATAAGCTTCAAGCACTTCTGATTGGCACGAAATCAGTTGATGT
CTTCGAAGATATTACCGCCGAAAATCCAGCTCAAGCTTTGTTCAGCGATG
AGGATTATGAGCCTGAGGAATTGTCTTCATTAAAAGACGAGCCTATGGCC
GGGGACGATGGGAACGTATTCGAAAGTGATATGGTTGCTAGCAAAGCCAT
GAAAAGAACGCGAACTCCCTCTCCCAGTATTCCGGAAATCCCGGAAGAAG
ACGAGGAGGAGGAGGAGGAGGAGGAGGATGATGACCACATGAAGGATCTC
TCCCCATCGCCAATTTCAAAATGTCAGACAAAACGGAAAGCATCGAACAA
CCATTCGGACAGACTCCTTGAAATAGAGGAGGAAAAACTGGCGATCGAGC
GAGAAAAGCTGCAGGTTATGAAGGATGCACTGCTGGAGCTAAACGCATTT
CACAAAGATATTGTTTATTTGCTTAAGCATAACAATCAGTAGAAGCTTTC
TAGACCAT
BS04249.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)j2D3-RA | 1176 | CG6801-PA | 1..1176 | 17..1192 | 5880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)j2D3-RA | 1513 | CG6801-RA | 132..1307 | 17..1192 | 5880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12117434..12117849 | 777..1192 | 2080 | 100 | Plus |
3L | 28110227 | 3L | 12116764..12117170 | 245..651 | 2035 | 100 | Plus |
3L | 28110227 | 3L | 12116232..12116459 | 17..244 | 1140 | 100 | Plus |
3L | 28110227 | 3L | 12117242..12117371 | 650..779 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:40:35 has no hits.
BS04249.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:38 Download gff for
BS04249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 1..1176 | 17..1192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:57 Download gff for
BS04249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 97..1272 | 17..1192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:50 Download gff for
BS04249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 132..1307 | 17..1192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:38 Download gff for
BS04249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 97..1272 | 17..1192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:23 Download gff for
BS04249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 132..1307 | 17..1192 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:23 Download gff for
BS04249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12116232..12116459 | 17..244 | 100 | -> | Plus |
3L | 12116764..12117170 | 245..651 | 100 | -> | Plus |
3L | 12117244..12117371 | 652..779 | 100 | -> | Plus |
3L | 12117437..12117849 | 780..1192 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:50 Download gff for
BS04249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12109332..12109559 | 17..244 | 100 | -> | Plus |
arm_3L | 12109864..12110270 | 245..651 | 100 | -> | Plus |
arm_3L | 12110344..12110471 | 652..779 | 100 | -> | Plus |
arm_3L | 12110537..12110949 | 780..1192 | 100 | | Plus |
BS04249.pep Sequence
Translation from 16 to 1191
> BS04249.pep
MPSRNIDDAAGAKEVHRSTRNSLIGPKSKRIALNSRNRSLAAAEKKTQSQ
LSFPPKSEYEKFYETVFLAEDLQPEENITPERRKPGPRMKSSLQALLSDE
GSPTGPQRTAKINVAQKMVVEPAIRANGISPLPKNVGKEEKFEDYYTKTE
RHVWKKDAEKMLLQLWAQHLKDFRGESKNVIIYRQMAREMSQFGPSHTEL
KTKMDNLSRKYRIEAERVRETGVPSKWEHFHKLQALLIGTKSVDVFEDIT
AENPAQALFSDEDYEPEELSSLKDEPMAGDDGNVFESDMVASKAMKRTRT
PSPSIPEIPEEDEEEEEEEEDDDHMKDLSPSPISKCQTKRKASNNHSDRL
LEIEEEKLAIEREKLQVMKDALLELNAFHKDIVYLLKHNNQ*
BS04249.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)j2D3-PA | 391 | CG6801-PA | 1..391 | 1..391 | 2010 | 100 | Plus |
ssp-PA | 368 | CG17153-PA | 121..361 | 154..388 | 270 | 29.4 | Plus |