Clone Sequence Records
BS04250.3prime Sequence
947 bp (882 high quality bases) assembled on 2005-12-01
> BS04250.3prime
ATGGTCTAGAAAGCTTTTACCAACTGGAGAAATCTCCAAAACCATTCGCC
AGTTTCTTCTTCTTGGCTGCTTGAGCGGATGTAAGTGGCGCCTCTGGCTT
TTTGGCCACTGTCTGAAGTTTCAGGTACTTGCCTACGCCCTCTCTGTACA
CCTTCAGTGGCTCCTTCATGCGCTTTTGCTGCTCCTCCTTCTTGACAATC
TCCTCCTTGCCGGCCGCCTCCTCCTCGCGCTCCTTGGCCAACTGTTCGGC
TGCCTCGGCAAATGGATTCACAAAGACCTGTGAGGACTCAATGATGATGT
CCTCAATTGGTCTGTCCTTGTTATCCACCTCGATATTTTCCATCTTTTGA
AGAGTGTCTAATCCTCCGACAAGCTTTCCAAAGATGGTGTGTTTGCCGTC
GAGATGTTTGCAAGAGCGATAGGTGATAAAGAACTGAGAGCCATTGGTGT
TGGGTCCCGAATTGGCCATTGATAGCACTCCTCGGCCCGTGTGCGTAAGA
TTCGGCTTAAACTCGTCCTCAAACTTCTTGCCCCAAATGGACTCGCCACC
AGAACCACTTCCAGTGGGATCACCACCTTGCACAATAAAATTCCTTATGG
ACCGGTGAAACATAACATTATTGTAGTAACCATTGGCGCAATGCTTGATG
AAGTTATCGCAGGCTCGAGGAGTTTGATCGCAGAAGAGCTCCAGGTTGAG
AGGGCCAAGGTTCGTATTTAAACGAACGTAGCCCTTCTTTTTTACCCGCT
CGTACTTGACCAAATCATCATCTATGATAGCCGCCTCTATTTGGGAAACG
GGCACCATGGCGGTAGACGTAAAACTGGCCGCCACCGCTCCAGTTGAATA
GTGAGCTGCGTTGAACTTGTCAGCTGTACGCTTCGAAGTGGAGGCCTCCT
CTTCCGCTGGCTGATAGTCCTGCTGCAGCTGTTTCAGCGTCTCCTTG
BS04250.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7747-PA | 1554 | CG7747-RA | 624..1554 | 947..17 | 4630 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7747-RA | 1696 | CG7747-RA | 720..1650 | 947..17 | 4640 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16292310..16292724 | 17..431 | 2075 | 100 | Plus |
| 2R | 25286936 | 2R | 16292987..16293352 | 582..947 | 1815 | 99.7 | Plus |
| 2R | 25286936 | 2R | 16292783..16292934 | 432..583 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:43:55 has no hits.
BS04250.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:46 Download gff for
BS04250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7747-PA | 624..1554 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:45 Download gff for
BS04250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7747-PA | 624..1554 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:35 Download gff for
BS04250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7747-RA | 720..1656 | 10..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:38:03 Download gff for
BS04250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7747-RA | 720..1656 | 10..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:38:03 Download gff for
BS04250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16292304..16292724 | 10..431 | 99 | <- | Plus |
| 2R | 16292783..16292934 | 432..583 | 100 | <- | Plus |
| 2R | 16292989..16293352 | 584..947 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:35 Download gff for
BS04250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12179809..12180229 | 10..431 | 99 | <- | Plus |
| arm_2R | 12180288..12180439 | 432..583 | 100 | <- | Plus |
| arm_2R | 12180494..12180857 | 584..947 | 99 | | Plus |
BS04250.5prime Sequence
829 bp (823 high quality bases) assembled on 2005-12-01
> BS04250.5prime
GAAGTTATCAGTCGACATGGGTAAAAGGCAGCATCAAAAGGACAAAATGT
ACCTCACGTACACGGAGTGGAGTGAGCTGTATGGCGGCAAAAAAGTGGAA
TCCTTGGAGAACGACCATGTCAAGTTCAAGCGGCTGCCATTCGAGCACTG
CTGCATTACGATGGCGCCCTACGAGATGCCCTACTGCGATCTACAGGGCA
ATGTGTTCGAGTACGAGGCCATTCTTAAGTTTCTCAAGACCTTTAAGGTG
AACCCCATCACCGGGCAGAAGATGGACTCCAAGTCATTGGTGAAGCTGAA
CTTCCACAGGAATGCAAACGATGAGTACCACTGCCCCGCCTTGTTCAAGC
CCTTCAGCAAGAACTCGCACATCGTGGCGGTGGCCACAACTGGAAATGTA
TACTGCTGGGAGGCAATCGACCAGCTGAACATTAAGACAAAGAACTGGAA
GGATCTGGTGGATGACACGCCATTCCAGCGTAAGGATATCATCACAATAC
AAGATCCTCAGAAGCTGGAAAAGTACGACATCTCGACCTTCTATCATATT
AAGAAGAATCTACGAGTCCTGACGGAAGAAGAGCAGCAAGAGAGAAAGAA
TCCAGCCAGCGGCCGCATTAAGACCATGAATCTGGAGACCAAGGAGACGC
TGGAACAGCTGCAGCAGGACTATCAGCCAGCGGAAGAGGAGGCCTCCACT
TCGAAGCGTACAGCTGACAAGTTCAACGCAGCTCACTATTCAACTGGAGC
GGTGGCGGCCAGTTTTACGTCTACCGCCATGGTGCCCGTTTCCCAAATAG
AGGCGGCTATCATAGATGATGATTTGGTC
BS04250.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7747-PA | 1554 | CG7747-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7747-RA | 1696 | CG7747-RA | 97..909 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16293163..16293943 | 829..49 | 3905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:41:42 has no hits.
BS04250.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:48 Download gff for
BS04250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7747-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:46 Download gff for
BS04250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7747-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:48:50 Download gff for
BS04250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7747-RA | 89..909 | 9..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:40:37 Download gff for
BS04250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7747-RA | 89..909 | 9..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:40:37 Download gff for
BS04250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16293163..16293943 | 49..829 | 100 | <- | Minus |
| 2R | 16294003..16294042 | 9..48 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:48:50 Download gff for
BS04250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12180668..12181448 | 49..829 | 100 | <- | Minus |
| arm_2R | 12181508..12181547 | 9..48 | 92 | | Minus |
BS04250.complete Sequence
1586 bp (1586 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634898
> BS04250.complete
GAAGTTATCAGTCGACATGGGTAAAAGGCAGCATCAAAAGGACAAAATGT
ACCTCACGTACACGGAGTGGAGTGAGCTGTATGGCGGCAAAAAAGTGGAA
TCCTTGGAGAACGACCATGTCAAGTTCAAGCGGCTGCCATTCGAGCACTG
CTGCATTACGATGGCGCCCTACGAGATGCCCTACTGCGATCTACAGGGCA
ATGTGTTCGAGTACGAGGCCATTCTTAAGTTTCTCAAGACCTTTAAGGTG
AACCCCATCACCGGGCAGAAGATGGACTCCAAGTCATTGGTGAAGCTGAA
CTTCCACAGGAATGCAAACGATGAGTACCACTGCCCCGCCTTGTTCAAGC
CCTTCAGCAAGAACTCGCACATCGTGGCGGTGGCCACAACTGGAAATGTA
TACTGCTGGGAGGCAATCGACCAGCTGAACATTAAGACAAAGAACTGGAA
GGATCTGGTGGATGACACGCCATTCCAGCGTAAGGATATCATCACAATAC
AAGATCCTCAGAAGCTGGAAAAGTACGACATCTCGACCTTCTATCATATT
AAGAAGAATCTACGAGTCCTGACGGAAGAAGAGCAGCAAGAGAGAAAGAA
TCCAGCCAGCGGCCGCATTAAGACCATGAATCTGGAGACCAAGGAGACGC
TGGAACAGCTGCAGCAGGACTATCAGCCAGCGGAAGAGGAGGCCTCCACT
TCGAAGCGTACAGCTGACAAGTTCAACGCAGCTCACTATTCAACTGGAGC
GGTGGCGGCCAGTTTTACGTCTACCGCCATGGTGCCCGTTTCCCAAATAG
AGGCGGCTATCATAGATGATGATTTGGTCAAGTACGAGCGGGTAAAAAAG
AAGGGCTACGTTCGTTTAAATACGAACCTTGGCCCTCTCAACCTGGAGCT
CTTCTGCGATCAAACTCCTCGAGCCTGCGATAACTTCATCAAGCATTGCG
CCAATGGTTACTACAATAATGTTATGTTTCACCGGTCCATAAGGAATTTT
ATTGTGCAAGGTGGTGATCCCACTGGAAGTGGTTCTGGTGGCGAGTCCAT
TTGGGGCAAGAAGTTTGAGGACGAGTTTAAGCCGAATCTTACGCACACGG
GCCGAGGAGTGCTATCAATGGCCAATTCGGGACCCAACACCAATGGCTCT
CAGTTCTTTATCACCTATCGCTCTTGCAAACATCTCGACGGCAAACACAC
CATCTTTGGAAAGCTTGTCGGAGGATTAGACACTCTTCAAAAGATGGAAA
ATATCGAGGTGGATAACAAGGACAGACCAATTGAGGACATCATCATTGAG
TCCTCACAGGTCTTTGTGAATCCATTTGCCGAGGCAGCCGAACAGTTGGC
CAAGGAGCGCGAGGAGGAGGCGGCCGGCAAGGAGGAGATTGTCAAGAAGG
AGGAGCAGCAAAAGCGCATGAAGGAGCCACTGAAGGTGTACAGAGAGGGC
GTAGGCAAGTACCTGAAACTTCAGACAGTGGCCAAAAAGCCAGAGGCGCC
ACTTACATCCGCTCAAGCAGCCAAGAAGAAGAAACTGGCGAATGGTTTTG
GAGATTTCTCCAGTTGGTAAAAGCTTTCTAGACCAT
BS04250.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7747-RA | 1554 | CG7747-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7747-RA | 1696 | CG7747-RA | 97..1650 | 17..1570 | 7770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16292987..16293943 | 1005..49 | 4785 | 100 | Minus |
| 2R | 25286936 | 2R | 16292310..16292724 | 1570..1156 | 2075 | 100 | Minus |
| 2R | 25286936 | 2R | 16292783..16292934 | 1155..1004 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:29:09 has no hits.
BS04250.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:49 Download gff for
BS04250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7747-RA | 1..1554 | 17..1570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:11 Download gff for
BS04250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7747-RA | 85..1652 | 9..1577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:15 Download gff for
BS04250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7747-RA | 97..1648 | 17..1568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:50 Download gff for
BS04250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7747-RA | 85..1652 | 9..1577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:16 Download gff for
BS04250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7747-RA | 97..1648 | 17..1568 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:16 Download gff for
BS04250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16292312..16292724 | 1156..1568 | 100 | <- | Minus |
| 2R | 16292783..16292934 | 1004..1155 | 100 | <- | Minus |
| 2R | 16292989..16293943 | 49..1003 | 100 | <- | Minus |
| 2R | 16294003..16294034 | 17..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:15 Download gff for
BS04250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12179817..12180229 | 1156..1568 | 100 | <- | Minus |
| arm_2R | 12180288..12180439 | 1004..1155 | 100 | <- | Minus |
| arm_2R | 12180494..12181448 | 49..1003 | 100 | <- | Minus |
| arm_2R | 12181508..12181539 | 17..48 | 100 | | Minus |
BS04250.pep Sequence
Translation from 16 to 1569
> BS04250.pep
MGKRQHQKDKMYLTYTEWSELYGGKKVESLENDHVKFKRLPFEHCCITMA
PYEMPYCDLQGNVFEYEAILKFLKTFKVNPITGQKMDSKSLVKLNFHRNA
NDEYHCPALFKPFSKNSHIVAVATTGNVYCWEAIDQLNIKTKNWKDLVDD
TPFQRKDIITIQDPQKLEKYDISTFYHIKKNLRVLTEEEQQERKNPASGR
IKTMNLETKETLEQLQQDYQPAEEEASTSKRTADKFNAAHYSTGAVAASF
TSTAMVPVSQIEAAIIDDDLVKYERVKKKGYVRLNTNLGPLNLELFCDQT
PRACDNFIKHCANGYYNNVMFHRSIRNFIVQGGDPTGSGSGGESIWGKKF
EDEFKPNLTHTGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTIFGKL
VGGLDTLQKMENIEVDNKDRPIEDIIIESSQVFVNPFAEAAEQLAKEREE
EAAGKEEIVKKEEQQKRMKEPLKVYREGVGKYLKLQTVAKKPEAPLTSAQ
AAKKKKLANGFGDFSSW*
BS04250.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7747-PA | 517 | CG7747-PA | 1..517 | 1..517 | 2732 | 100 | Plus |
| CG11777-PA | 161 | CG11777-PA | 3..160 | 282..438 | 438 | 50.6 | Plus |
| Cypl-PA | 176 | CG13892-PA | 22..173 | 281..432 | 435 | 50.7 | Plus |
| CG10907-PA | 502 | CG10907-PA | 13..250 | 280..506 | 416 | 37.9 | Plus |
| CG3511-PB | 637 | CG3511-PB | 484..632 | 282..429 | 382 | 49 | Plus |
