Clone BS04251 Report

Search the DGRC for BS04251

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG4004-RB
Protein status:BS04251.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04251.3prime Sequence

936 bp (817 high quality bases) assembled on 2005-12-01

> BS04251.3prime
ATGGTCTAGAAAGCTTTTATTTATGACCCATACTAAATTGGGTCTCGAAC
GAAAGGCGATTCATTCGGCCGTAGACCAACACCTCGCTAATGATCCGTTC
GGCGAAAAGTCGCTGATCCGGACGCATACGCCGGAAGTGGCTGGCCATCC
GTTTTCCGATCAGCTCGCACTCGTACTCGCTGTCGCTTTCATGCTTTCTG
TCTCGCTCCCTATCCCGCTCTCTATGCCAGTCTCTATCTCTATTCGAAGT
CTCCACATTTCTACGCTTTCTCGCCGCTTCAACGTAATCGGTGTCATTGC
TACTGCGTCTTCGTCGGTTACGGATGCGACGTCCGGATTTATCCGAAGTC
TGCGATTCACCGTTATGCTGCTGGTGCGAAGATACGGTGTGCTGCTGATA
GCCATTGTTCTTAATGCTCCCAGCCGATGAATTGTTACGATAATCATCAA
CATGATCATCCATGTTATCCAATTCGGGATCGTTATCAGGCTCGGGTTCC
GGTTCAACATCGCCATCACCCACGGCATCAAGACGTAGCATATCCTCTTC
GTGTGGAAAGGCATCAGACATAATGTCAACATCTTCGGTCTCCAATTGCT
GCATATCCTCGGTTATATTCTCATCAACTTCAATTTCTCGCTTCACAATA
AAGCTCATTGATACCTCCTGTTCCGCCAATTGCGCTCCGAATGTTATCGT
TTTATTTGACTCATTCTGCAGGACTTTCGAATTTCGAACCAAATCCCGAT
CGGCGGCCACTATGCCCTCCAATTGCAGTTCACCGGTTTCCAGTTCATAG
AGAAAGTCTAGTTCTTTGAAATACCAAAGCGTTGGCTTATATGTGTTCCC
ACTATCCAGCACCTTTCGCAATCCCGGCGATACGAGGTCCGAAAATTGTT
GATCTTACGTTTGAGCGTATGGATATTGGCATAGCT

BS04251.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-PB 1020 CG4004-RB 165..1020 872..17 4280 100 Minus
CG4004-PA 960 CG4004-RA 394..960 583..17 2835 100 Minus
CG4004-PB 1020 CG4004-RB 100..164 936..872 325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-RB 1395 CG4004-RB 157..1077 936..17 4580 99.9 Minus
CG4004-RC 1288 CG4004-RC 404..970 583..17 2835 100 Minus
CG4004-RE 2237 CG4004-RE 739..1305 583..17 2835 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12746869..12747435 583..17 2835 100 Minus
X 23542271 X 12745514..12745868 936..583 1725 99.7 Minus
Blast to na_te.dros performed on 2015-02-10 22:39:54 has no hits.

BS04251.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:49 Download gff for BS04251.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4004-PB 100..1020 17..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:47 Download gff for BS04251.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4004-PB 100..1020 17..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:18 Download gff for BS04251.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 157..1077 17..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:01 Download gff for BS04251.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 157..1077 17..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:01 Download gff for BS04251.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12745514..12745867 584..936 99 -> Minus
X 12746869..12747435 17..583 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:18 Download gff for BS04251.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12639547..12639900 584..936 99 -> Minus
arm_X 12640902..12641468 17..583 100   Minus

BS04251.5prime Sequence

931 bp (805 high quality bases) assembled on 2005-12-01

> BS04251.5prime
GAAGTTATCAGTCGACATGCCCGAATTGTGGCTGGTGCGCAGTAAACTGT
ATCGCGATCGCCAGCTGAAGCTCGAATCCTATAGCCGATTATTAGAGCTG
CTACGCACGACCGATAGCTATGCCAATATCCATACGCTCAAACGTAAGAT
CAACAATTTTCGGACCTCGTATCGCCGGGAATTGCGAAAGGTGCTGGATA
GTGGGAACACATATAAGCCAACGCTTTGGTATTTCAAAGAACTAGACTTT
CTCTATGAACTGGAAACCGGTGAACTGCAATTGGAGGGCATAGTGGCCGC
CGATCGGGATTTGGTTCGAAATTCGAAAGTCCTGCAGAATGAGTCAAATA
AAACGATAACATTCGGAGCGCAATTGGCGGAACAGGAGGTATCAATGAGC
TTTATTGTGAAGCGAGAAATTGAAGTTGATGAGAATATAACCGAGGATAT
GCAGCAATTGGAGACCGAAGATGTTGACATTATGTCTGATGCCTTTCCAC
ACGAAGAGGATATGCTACGTCTTGATGCCGTGGGTGATGGCGATGTTGAA
CCGGAACCCGAGCCTGATAACGATCCCGAATTGGATAACATGGATGATCA
TGTTGATGATTATCGTAACAATTCATCGGCTGGGAGCATTAAGAACAATG
GCTATCAGCAGCACACCGTATCTTCGCACCAGCAGCATAACGGTGAATCG
CAGACTTCGGATAAATCCGGACGTCGCATCCGTAACCGACGAAGACGCAG
TAGCAATGACACCGATTACGTTGAAGCGGCGAGAAAGCGTAGAAATGTGG
AGACTTCGAATAGAGATAGAGACTGGCATAGAGAGCGGGATAGGGAGCGA
GACAGAAAGCATGAAAGCGACAGCGAGTACGAGTGCGAGCTGATCGGAAA
ACGGATGGCCAGCCACTTCCGGCGTATGCGT

BS04251.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-PB 1020 CG4004-RB 1..915 17..931 4575 100 Plus
CG4004-PA 960 CG4004-RA 394..855 470..931 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-RB 1395 CG4004-RB 58..972 17..931 4575 100 Plus
CG4004-RC 1288 CG4004-RC 404..865 470..931 2310 100 Plus
CG4004-RE 2237 CG4004-RE 739..1200 470..931 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12746869..12747330 470..931 2310 100 Plus
X 23542271 X 12745415..12745868 17..470 2270 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:08:51 has no hits.

BS04251.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:49 Download gff for BS04251.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4004-PB 1..915 17..931 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:49 Download gff for BS04251.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4004-PB 1..915 17..931 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:14:33 Download gff for BS04251.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 55..972 12..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:23 Download gff for BS04251.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 55..972 12..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:23 Download gff for BS04251.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12745412..12745867 12..469 99 -> Plus
X 12746869..12747330 470..931 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:14:33 Download gff for BS04251.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12639445..12639900 12..469 99 -> Plus
arm_X 12640902..12641363 470..931 100   Plus

BS04251.complete Sequence

1052 bp (1052 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634899

> BS04251.complete
GAAGTTATCAGTCGACATGCCCGAATTGTGGCTGGTGCGCAGTAAACTGT
ATCGCGATCGCCAGCTGAAGCTCGAATCCTATAGCCGATTATTAGAGCTG
CTACGCACGACCGATAGCTATGCCAATATCCATACGCTCAAACGTAAGAT
CAACAATTTTCGGACCTCGTATCGCCGGGAATTGCGAAAGGTGCTGGATA
GTGGGAACACATATAAGCCAACGCTTTGGTATTTCAAAGAACTAGACTTT
CTCTATGAACTGGAAACCGGTGAACTGCAATTGGAGGGCATAGTGGCCGC
CGATCGGGATTTGGTTCGAAATTCGAAAGTCCTGCAGAATGAGTCAAATA
AAACGATAACATTCGGAGCGCAATTGGCGGAACAGGAGGTATCAATGAGC
TTTATTGTGAAGCGAGAAATTGAAGTTGATGAGAATATAACCGAGGATAT
GCAGCAATTGGAGACCGAAGATGTTGACATTATGTCTGATGCCTTTCCAC
ACGAAGAGGATATGCTACGTCTTGATGCCGTGGGTGATGGCGATGTTGAA
CCGGAACCCGAGCCTGATAACGATCCCGAATTGGATAACATGGATGATCA
TGTTGATGATTATCGTAACAATTCATCGGCTGGGAGCATTAAGAACAATG
GCTATCAGCAGCACACCGTATCTTCGCACCAGCAGCATAACGGTGAATCG
CAGACTTCGGATAAATCCGGACGTCGCATCCGTAACCGACGAAGACGCAG
TAGCAATGACACCGATTACGTTGAAGCGGCGAGAAAGCGTAGAAATGTGG
AGACTTCGAATAGAGATAGAGACTGGCATAGAGAGCGGGATAGGGAGCGA
GACAGAAAGCATGAAAGCGACAGCGAGTACGAGTGCGAGCTGATCGGAAA
ACGGATGGCCAGCCACTTCCGGCGTATGCGTCCGGATCAGCGACTTTTCG
CCGAACGGATCATTAGCGAGGTGTTGGTCTACGGCCGAATGAATCGCCTT
TCGTTCGAGACCCAATTTAGTATGGGTCATAAATAAAAGCTTTCTAGACC
AT

BS04251.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-RB 1020 CG4004-PB 1..1020 17..1036 5100 100 Plus
CG4004-RC 915 CG4004-PC 349..915 470..1036 2835 100 Plus
CG4004-RE 960 CG4004-PE 394..960 470..1036 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-RB 1395 CG4004-RB 58..1077 17..1036 5100 100 Plus
CG4004-RC 1288 CG4004-RC 404..970 470..1036 2835 100 Plus
CG4004-RE 2237 CG4004-RE 739..1305 470..1036 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12746869..12747435 470..1036 2835 100 Plus
X 23542271 X 12745415..12745868 17..470 2270 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:08:33 has no hits.

BS04251.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:51 Download gff for BS04251.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 1..1020 17..1036 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:13 Download gff for BS04251.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 55..1077 12..1036 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:12 Download gff for BS04251.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 58..1069 17..1028 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:51 Download gff for BS04251.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 55..1077 12..1036 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:06 Download gff for BS04251.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 58..1069 17..1028 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:06 Download gff for BS04251.complete
Subject Subject Range Query Range Percent Splice Strand
X 12745415..12745867 17..469 100 -> Plus
X 12746869..12747427 470..1028 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:12 Download gff for BS04251.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12639448..12639900 17..469 100 -> Plus
arm_X 12640902..12641460 470..1028 100   Plus

BS04251.pep Sequence

Translation from 16 to 1035

> BS04251.pep
MPELWLVRSKLYRDRQLKLESYSRLLELLRTTDSYANIHTLKRKINNFRT
SYRRELRKVLDSGNTYKPTLWYFKELDFLYELETGELQLEGIVAADRDLV
RNSKVLQNESNKTITFGAQLAEQEVSMSFIVKREIEVDENITEDMQQLET
EDVDIMSDAFPHEEDMLRLDAVGDGDVEPEPEPDNDPELDNMDDHVDDYR
NNSSAGSIKNNGYQQHTVSSHQQHNGESQTSDKSGRRIRNRRRRSSNDTD
YVEAARKRRNVETSNRDRDWHRERDRERDRKHESDSEYECELIGKRMASH
FRRMRPDQRLFAERIISEVLVYGRMNRLSFETQFSMGHK*

BS04251.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-PB 339 CG4004-PB 1..339 1..339 1762 100 Plus
CG4004-PE 319 CG4004-PE 29..319 4..339 1123 67.6 Plus
CG4004-PD 319 CG4004-PD 29..319 4..339 1123 67.6 Plus
CG4004-PA 319 CG4004-PA 29..319 4..339 1123 67.6 Plus
CG4004-PC 304 CG4004-PC 113..304 148..339 1002 98.4 Plus