Clone Sequence Records
BS04251.3prime Sequence
936 bp (817 high quality bases) assembled on 2005-12-01
> BS04251.3prime
ATGGTCTAGAAAGCTTTTATTTATGACCCATACTAAATTGGGTCTCGAAC
GAAAGGCGATTCATTCGGCCGTAGACCAACACCTCGCTAATGATCCGTTC
GGCGAAAAGTCGCTGATCCGGACGCATACGCCGGAAGTGGCTGGCCATCC
GTTTTCCGATCAGCTCGCACTCGTACTCGCTGTCGCTTTCATGCTTTCTG
TCTCGCTCCCTATCCCGCTCTCTATGCCAGTCTCTATCTCTATTCGAAGT
CTCCACATTTCTACGCTTTCTCGCCGCTTCAACGTAATCGGTGTCATTGC
TACTGCGTCTTCGTCGGTTACGGATGCGACGTCCGGATTTATCCGAAGTC
TGCGATTCACCGTTATGCTGCTGGTGCGAAGATACGGTGTGCTGCTGATA
GCCATTGTTCTTAATGCTCCCAGCCGATGAATTGTTACGATAATCATCAA
CATGATCATCCATGTTATCCAATTCGGGATCGTTATCAGGCTCGGGTTCC
GGTTCAACATCGCCATCACCCACGGCATCAAGACGTAGCATATCCTCTTC
GTGTGGAAAGGCATCAGACATAATGTCAACATCTTCGGTCTCCAATTGCT
GCATATCCTCGGTTATATTCTCATCAACTTCAATTTCTCGCTTCACAATA
AAGCTCATTGATACCTCCTGTTCCGCCAATTGCGCTCCGAATGTTATCGT
TTTATTTGACTCATTCTGCAGGACTTTCGAATTTCGAACCAAATCCCGAT
CGGCGGCCACTATGCCCTCCAATTGCAGTTCACCGGTTTCCAGTTCATAG
AGAAAGTCTAGTTCTTTGAAATACCAAAGCGTTGGCTTATATGTGTTCCC
ACTATCCAGCACCTTTCGCAATCCCGGCGATACGAGGTCCGAAAATTGTT
GATCTTACGTTTGAGCGTATGGATATTGGCATAGCT
BS04251.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4004-PB | 1020 | CG4004-RB | 165..1020 | 872..17 | 4280 | 100 | Minus |
CG4004-PA | 960 | CG4004-RA | 394..960 | 583..17 | 2835 | 100 | Minus |
CG4004-PB | 1020 | CG4004-RB | 100..164 | 936..872 | 325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4004-RB | 1395 | CG4004-RB | 157..1077 | 936..17 | 4580 | 99.9 | Minus |
CG4004-RC | 1288 | CG4004-RC | 404..970 | 583..17 | 2835 | 100 | Minus |
CG4004-RE | 2237 | CG4004-RE | 739..1305 | 583..17 | 2835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12746869..12747435 | 583..17 | 2835 | 100 | Minus |
X | 23542271 | X | 12745514..12745868 | 936..583 | 1725 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:39:54 has no hits.
BS04251.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:49 Download gff for
BS04251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-PB | 100..1020 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:47 Download gff for
BS04251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-PB | 100..1020 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:18 Download gff for
BS04251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 157..1077 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:01 Download gff for
BS04251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 157..1077 | 17..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:01 Download gff for
BS04251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12745514..12745867 | 584..936 | 99 | -> | Minus |
X | 12746869..12747435 | 17..583 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:18 Download gff for
BS04251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12639547..12639900 | 584..936 | 99 | -> | Minus |
arm_X | 12640902..12641468 | 17..583 | 100 | | Minus |
BS04251.5prime Sequence
931 bp (805 high quality bases) assembled on 2005-12-01
> BS04251.5prime
GAAGTTATCAGTCGACATGCCCGAATTGTGGCTGGTGCGCAGTAAACTGT
ATCGCGATCGCCAGCTGAAGCTCGAATCCTATAGCCGATTATTAGAGCTG
CTACGCACGACCGATAGCTATGCCAATATCCATACGCTCAAACGTAAGAT
CAACAATTTTCGGACCTCGTATCGCCGGGAATTGCGAAAGGTGCTGGATA
GTGGGAACACATATAAGCCAACGCTTTGGTATTTCAAAGAACTAGACTTT
CTCTATGAACTGGAAACCGGTGAACTGCAATTGGAGGGCATAGTGGCCGC
CGATCGGGATTTGGTTCGAAATTCGAAAGTCCTGCAGAATGAGTCAAATA
AAACGATAACATTCGGAGCGCAATTGGCGGAACAGGAGGTATCAATGAGC
TTTATTGTGAAGCGAGAAATTGAAGTTGATGAGAATATAACCGAGGATAT
GCAGCAATTGGAGACCGAAGATGTTGACATTATGTCTGATGCCTTTCCAC
ACGAAGAGGATATGCTACGTCTTGATGCCGTGGGTGATGGCGATGTTGAA
CCGGAACCCGAGCCTGATAACGATCCCGAATTGGATAACATGGATGATCA
TGTTGATGATTATCGTAACAATTCATCGGCTGGGAGCATTAAGAACAATG
GCTATCAGCAGCACACCGTATCTTCGCACCAGCAGCATAACGGTGAATCG
CAGACTTCGGATAAATCCGGACGTCGCATCCGTAACCGACGAAGACGCAG
TAGCAATGACACCGATTACGTTGAAGCGGCGAGAAAGCGTAGAAATGTGG
AGACTTCGAATAGAGATAGAGACTGGCATAGAGAGCGGGATAGGGAGCGA
GACAGAAAGCATGAAAGCGACAGCGAGTACGAGTGCGAGCTGATCGGAAA
ACGGATGGCCAGCCACTTCCGGCGTATGCGT
BS04251.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4004-PB | 1020 | CG4004-RB | 1..915 | 17..931 | 4575 | 100 | Plus |
CG4004-PA | 960 | CG4004-RA | 394..855 | 470..931 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4004-RB | 1395 | CG4004-RB | 58..972 | 17..931 | 4575 | 100 | Plus |
CG4004-RC | 1288 | CG4004-RC | 404..865 | 470..931 | 2310 | 100 | Plus |
CG4004-RE | 2237 | CG4004-RE | 739..1200 | 470..931 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12746869..12747330 | 470..931 | 2310 | 100 | Plus |
X | 23542271 | X | 12745415..12745868 | 17..470 | 2270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:08:51 has no hits.
BS04251.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:49 Download gff for
BS04251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-PB | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:49 Download gff for
BS04251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-PB | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:14:33 Download gff for
BS04251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 55..972 | 12..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:23 Download gff for
BS04251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 55..972 | 12..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:23 Download gff for
BS04251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12745412..12745867 | 12..469 | 99 | -> | Plus |
X | 12746869..12747330 | 470..931 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:14:33 Download gff for
BS04251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12639445..12639900 | 12..469 | 99 | -> | Plus |
arm_X | 12640902..12641363 | 470..931 | 100 | | Plus |
BS04251.complete Sequence
1052 bp (1052 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634899
> BS04251.complete
GAAGTTATCAGTCGACATGCCCGAATTGTGGCTGGTGCGCAGTAAACTGT
ATCGCGATCGCCAGCTGAAGCTCGAATCCTATAGCCGATTATTAGAGCTG
CTACGCACGACCGATAGCTATGCCAATATCCATACGCTCAAACGTAAGAT
CAACAATTTTCGGACCTCGTATCGCCGGGAATTGCGAAAGGTGCTGGATA
GTGGGAACACATATAAGCCAACGCTTTGGTATTTCAAAGAACTAGACTTT
CTCTATGAACTGGAAACCGGTGAACTGCAATTGGAGGGCATAGTGGCCGC
CGATCGGGATTTGGTTCGAAATTCGAAAGTCCTGCAGAATGAGTCAAATA
AAACGATAACATTCGGAGCGCAATTGGCGGAACAGGAGGTATCAATGAGC
TTTATTGTGAAGCGAGAAATTGAAGTTGATGAGAATATAACCGAGGATAT
GCAGCAATTGGAGACCGAAGATGTTGACATTATGTCTGATGCCTTTCCAC
ACGAAGAGGATATGCTACGTCTTGATGCCGTGGGTGATGGCGATGTTGAA
CCGGAACCCGAGCCTGATAACGATCCCGAATTGGATAACATGGATGATCA
TGTTGATGATTATCGTAACAATTCATCGGCTGGGAGCATTAAGAACAATG
GCTATCAGCAGCACACCGTATCTTCGCACCAGCAGCATAACGGTGAATCG
CAGACTTCGGATAAATCCGGACGTCGCATCCGTAACCGACGAAGACGCAG
TAGCAATGACACCGATTACGTTGAAGCGGCGAGAAAGCGTAGAAATGTGG
AGACTTCGAATAGAGATAGAGACTGGCATAGAGAGCGGGATAGGGAGCGA
GACAGAAAGCATGAAAGCGACAGCGAGTACGAGTGCGAGCTGATCGGAAA
ACGGATGGCCAGCCACTTCCGGCGTATGCGTCCGGATCAGCGACTTTTCG
CCGAACGGATCATTAGCGAGGTGTTGGTCTACGGCCGAATGAATCGCCTT
TCGTTCGAGACCCAATTTAGTATGGGTCATAAATAAAAGCTTTCTAGACC
AT
BS04251.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4004-RB | 1020 | CG4004-PB | 1..1020 | 17..1036 | 5100 | 100 | Plus |
CG4004-RC | 915 | CG4004-PC | 349..915 | 470..1036 | 2835 | 100 | Plus |
CG4004-RE | 960 | CG4004-PE | 394..960 | 470..1036 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4004-RB | 1395 | CG4004-RB | 58..1077 | 17..1036 | 5100 | 100 | Plus |
CG4004-RC | 1288 | CG4004-RC | 404..970 | 470..1036 | 2835 | 100 | Plus |
CG4004-RE | 2237 | CG4004-RE | 739..1305 | 470..1036 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12746869..12747435 | 470..1036 | 2835 | 100 | Plus |
X | 23542271 | X | 12745415..12745868 | 17..470 | 2270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:08:33 has no hits.
BS04251.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:51 Download gff for
BS04251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 1..1020 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:13 Download gff for
BS04251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 55..1077 | 12..1036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:12 Download gff for
BS04251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 58..1069 | 17..1028 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:51 Download gff for
BS04251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 55..1077 | 12..1036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:06 Download gff for
BS04251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 58..1069 | 17..1028 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:06 Download gff for
BS04251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12745415..12745867 | 17..469 | 100 | -> | Plus |
X | 12746869..12747427 | 470..1028 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:12 Download gff for
BS04251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12639448..12639900 | 17..469 | 100 | -> | Plus |
arm_X | 12640902..12641460 | 470..1028 | 100 | | Plus |
BS04251.pep Sequence
Translation from 16 to 1035
> BS04251.pep
MPELWLVRSKLYRDRQLKLESYSRLLELLRTTDSYANIHTLKRKINNFRT
SYRRELRKVLDSGNTYKPTLWYFKELDFLYELETGELQLEGIVAADRDLV
RNSKVLQNESNKTITFGAQLAEQEVSMSFIVKREIEVDENITEDMQQLET
EDVDIMSDAFPHEEDMLRLDAVGDGDVEPEPEPDNDPELDNMDDHVDDYR
NNSSAGSIKNNGYQQHTVSSHQQHNGESQTSDKSGRRIRNRRRRSSNDTD
YVEAARKRRNVETSNRDRDWHRERDRERDRKHESDSEYECELIGKRMASH
FRRMRPDQRLFAERIISEVLVYGRMNRLSFETQFSMGHK*
BS04251.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4004-PB | 339 | CG4004-PB | 1..339 | 1..339 | 1762 | 100 | Plus |
CG4004-PE | 319 | CG4004-PE | 29..319 | 4..339 | 1123 | 67.6 | Plus |
CG4004-PD | 319 | CG4004-PD | 29..319 | 4..339 | 1123 | 67.6 | Plus |
CG4004-PA | 319 | CG4004-PA | 29..319 | 4..339 | 1123 | 67.6 | Plus |
CG4004-PC | 304 | CG4004-PC | 113..304 | 148..339 | 1002 | 98.4 | Plus |