Clone Sequence Records
BS04252.3prime Sequence
942 bp (772 high quality bases) assembled on 2005-12-01
> BS04252.3prime
ATGGTCTAGAAAGCTTTTAAATGGGCTGAACTTCCTTTTTGAGCCAGGAC
AGAGTAAATTCGTCTCCTTCGCGAGATAGGATTGGGGAAAGAGTGTCCCA
GACTTGTTGATGATAGCTGTTGAGCAGCTTTACTTCCGCATCCGATAGAA
GTTCCTTTTTAATCATTTTCGTTTGCTTCGGGCACATGGTGATGGTTTTG
AATGTGAGGGCGCCTCGGTTGGAGAAATTGTGTGCCACCTGGCCTGGCAC
AATTTGAACAATATCCTCGACACGGATGCCAAACTCTCCGTCCTGGTAGA
AACCAGGCTCATTGGAAATAAACATGTTCGCCTGGAGACCAGGATCGTCG
GGCATCAGTCGAATTCCTACGCCCATGGGACCTTCGTGGACATTTAGGAA
GTGACCTACTCCATGGCCGGTTCCGTGTCCGTAGTCCAAACCGACGTCCC
ACAGGGCCTTCCTCGCTAGAGTGTCAAGAACCTGTCCCTTAACCTTAGCT
GGGAATACGGTGGAGCCGAAGCTCAGTTGGCCCTTTAAAACGCGAGTGTA
GGCTTCCTTCTGAAACTCAGTGGGTTCACCGAAGTGAAGGGTCCTCGTCA
CATCCGTAGTACCATCCAAGTATTGAGCTCCGGAATCACACAGATAAATC
TCTTTGTCATTTATCTTCCTGTTGGTTTCCTTCTTTGGGTGATAGTGAAT
AACAGAGCCGTTGGGTCCCGAAGCACTAATTGTGGTGAAGCTAAGGCCCA
TGTACTTATCCTTTGTCGACCGGAAGGACTCGAGTTTATCGGCACCAGAC
ATTTCATCGACTTCCGCACCCCTATTCACTTGATCCTCAAGCCAGGCGAA
ATACTGACACAAAGCGACTCCATCGCGAATGTGGCTGTTGATGAAGCCTG
CGATCTCGACATCGTTCTTAATGCCCTTCANCACACAAATCG
BS04252.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6291-PA | 1842 | ApepP-RA | 917..1842 | 942..17 | 4561 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ApepP-RB | 2190 | CG6291-RB | 1178..2103 | 942..17 | 4589 | 99.7 | Minus |
| ApepP-RA | 2066 | CG6291-RA | 1054..1979 | 942..17 | 4589 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16908316..16909241 | 17..942 | 4589 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:38:05 has no hits.
BS04252.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:50 Download gff for
BS04252.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-PA | 917..1842 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:50 Download gff for
BS04252.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6291-PA | 917..1842 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:19:45 Download gff for
BS04252.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 1054..1993 | 3..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:27 Download gff for
BS04252.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 1054..1993 | 3..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:27 Download gff for
BS04252.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16908302..16909241 | 3..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:19:45 Download gff for
BS04252.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16908302..16909241 | 3..942 | 99 | | Plus |
BS04252.5prime Sequence
912 bp (772 high quality bases) assembled on 2005-12-01
> BS04252.5prime
GAAGTTATCAGTCGACATGAAGAGGAGCACCACCCAAATTCTGACCAGGT
TGAGGGAGCTAATGCTCCGCGCCCAGGTGGGCGACTCCTGCGGCATATCG
GCATACATTGTGCCCTCGGACGACGCCCATCAGTCGGAGTACCAGTGCCA
GCATGACGAGCGACGCTCCTTTGTGAGTGGTTTCGATGGATCCGCTGGCA
CGGCGGTGATAACGACGGAGACCGCACTGCTGTGGACCGACGGTCGTTAC
TATCAGCAGGCGGAGAAGCAGCTGGACTCCAATTGGGTTCTAATGCGGGA
TGGTCTGAGCGCCACCCCGTCGATTGGCGCCTGGCTGGCGAAGAATCTGC
CCAAGGGCAGCTTTGTGGGCGTGGATCCTCGCCTGTTGTCGTTCCGCGTA
TGGAAACCCATCGAAACGGAACTAAGCTCCGCGGAATGCCAGCTGGTGCC
CATCGAAGGCAACCTCATCGACGAGGTCTGGGGTGAGGATCAGCCACCGC
AAACCTCAAACAAGATTATAACCCTGAAACTAGAACATTCTGGCGTAACT
ATCGCCAAAAAATGGGACGTGGTGCGCCAGCAGTTGAAGGAGAAGAATGC
TGATGCCCTGGTGGTCAGTGCTCTCGATGAAATCGCTTGGTTCTTGAACC
TACGCGGCTCGGACATTGACTTCAACCCCGTCTTCTTCTCCTACTTGATT
GTGACCAACGATGAACTACTGCTCTTTGTGGACTCTGGCAAATTGCCCAC
TGATTTTGTGCAGCATCAAAAGGAGAACAATGTGCAGATAAGCGTTTTGC
CTTACGCCTCAATTGGCATTGAAATCAGTAAGATTGTGTCGACCAGGGAG
TCAAAGATCTGGATAGCACCCACCAGCAGCTACTATCTAACTGCTTTGAT
ACCCAAGTCACG
BS04252.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6291-PA | 1842 | ApepP-RA | 1..896 | 17..912 | 4480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ApepP-RB | 2190 | CG6291-RB | 262..1157 | 17..912 | 4480 | 100 | Plus |
| ApepP-RA | 2066 | CG6291-RA | 138..1033 | 17..912 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16909262..16910157 | 912..17 | 4480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:07:31 has no hits.
BS04252.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:52 Download gff for
BS04252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-PA | 1..896 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:52 Download gff for
BS04252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6291-PA | 1..896 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:28:05 Download gff for
BS04252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 134..1033 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:50:21 Download gff for
BS04252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 134..1033 | 9..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:50:21 Download gff for
BS04252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16909262..16910161 | 9..912 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:28:05 Download gff for
BS04252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16909262..16910161 | 9..912 | 99 | | Minus |
BS04252.complete Sequence
1874 bp assembled on 2008-01-02
GenBank Submission: FJ634900
> BS04252.complete
GAAGTTATCAGTCGACATGAAGAGGAGCACCACCCAAATTCTGACCAGGT
TGAGGGAGCTAATGCTCCGCGCCCAGGTGGGCGACTCCTGCGGCATATCG
GCATACATTGTGCCCTCGGACGACGCCCATCAGTCGGAGTACCAGTGCCA
GCATGACGAGCGACGCTCCTTTGTGAGTGGTTTCGATGGATCCGCTGGCA
CGGCGGTGATAACGACGGAGACCGCACTGCTGTGGACCGACGGTCGTTAC
TATCAGCAGGCGGAGAAGCAGCTGGACTCCAATTGGGTTCTAATGCGGGA
TGGTCTGAGCGCCACCCCGTCGATTGGCGCCTGGCTGGCGAAGAATCTGC
CCAAGGGCAGCTTTGTGGGCGTGGATCCTCGCCTGTTGTCGTTCCGCGTA
TGGAAACCCATCGAAACGGAACTAAGCTCCGCGGAATGCCAGCTGGTGCC
CATCGAAGGCAACCTCATCGACGAGGTCTGGGGTGAGGATCAGCCACCGC
AAACCTCAAACAAGATTATAACCCTGAAACTAGAACATTCTGGCGTAACT
ATCGCCAAAAAATGGGACGTGGTGCGCCAGCAGTTGAAGGAGAAGAATGC
TGATGCCCTGGTGGTCAGTGCTCTCGATGAAATCGCTTGGTTCTTGAACC
TACGCGGCTCGGACATTGACTTCAACCCCGTCTTCTTCTCCTACTTGATT
GTGACCAACGATGAACTACTGCTCTTTGTGGACTCTGGCAAATTGCCCAC
TGATTTTGTGCAGCATCAAAAGGAGAACAATGTGCAGATAAGCGTTTTGC
CTTACGCCTCAATTGGCATTGAAATCAGTAAGATTGTGTCGACCAGGGAG
TCAAAGATCTGGATAGCACCCACCAGCAGCTACTATCTAACTGCTTTGAT
ACCCAAGTCACGTAGAATTCAGGAGGTAACGCCGATTTGTGTGCTGAAGG
CCATTAAGAACGATGTCGAGATCGCAGGCTTCATCAACAGCCACATTCGC
GATGGAGTCGCTTTGTGTCAGTATTTCGCCTGGCTTGAGGATCAAGTGAA
TAAGGGTGCGGAAGTCGATGAAATGTCTGGTGCCGATAAACTCGAGTCCT
TCCGGTCGACAAAGGATAAGTACATGGGCCTTAGCTTCACCACAATTAGT
GCTTCGGGACCCAACGGCTCTGTTATTCACTATCACCCAAAGAAGGAAAC
CAACAGGAAGATAAATGACAAAGAGATTTATCTGTGTGATTCCGGAGCTC
AATACTTGGATGGTACTACGGATGTGACGAGGACCCTTCACTTCGGTGAA
CCCACTGAGTTTCAGAAGGAAGCCTACACTCGCGTTTTAAAGGGCCAACT
GAGCTTCGGCTCCACCGTATTCCCAGCTAAGGTTAAGGGACAGGTTCTTG
ACACTCTAGCGAGGAAGGCCCTGTGGGACGTCGGTTTGGACTACGGACAC
GGAACCGGCCATGGAGTAGGTCACTTCCTAAATGTCCACGAAGGTCCCAT
GGGCGTAGGAATTCGACTGATGCCCGACGATCCTGGTCTCCAGGCGAACA
TGTTTATTTCCAATGAGCCTGGTTTCTACCAGGACGGAGAGTTTGGCATC
CGTGTCGAGGATATTGTTCAAATTGTGCCAGGCCAGGTGGCACACAATTT
CTCCAACCGAGGCGCCCTCACATTCAAAACCATCACCATGTGCCCGAAGC
AAACGAAAATGATTAAAAAGGAACTTCTATCGGATGCGGAAGTAAAGCTG
CTCAACAGCTATCATCAACAAGTCTGGGACACTCTTTCCCCAATCCTATC
TCGCGAAGGAGACGAATTTACTCTGTCCTGGCTCAAAAAGGAAGTTCAGC
CCATTTAAAAGCTTTCTAGACCAT
BS04252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ApepP-RB | 1842 | CG6291-PB | 1..1842 | 17..1858 | 9210 | 100 | Plus |
| ApepP-RA | 1842 | CG6291-PA | 1..1842 | 17..1858 | 9210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ApepP-RB | 2190 | CG6291-RB | 262..2103 | 17..1858 | 9210 | 100 | Plus |
| ApepP-RA | 2066 | CG6291-RA | 138..1979 | 17..1858 | 9210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16908316..16910157 | 1858..17 | 9210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:43:38 has no hits.
BS04252.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:51 Download gff for
BS04252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 1..1842 | 17..1858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:19 Download gff for
BS04252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 151..1990 | 17..1856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:00 Download gff for
BS04252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 138..1977 | 17..1856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:52 Download gff for
BS04252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 147..2006 | 9..1872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:20 Download gff for
BS04252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 138..1977 | 17..1856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:20 Download gff for
BS04252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16908318..16910157 | 17..1856 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:00 Download gff for
BS04252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16908318..16910157 | 17..1856 | 100 | | Minus |
BS04252.pep Sequence
Translation from 16 to 1857
> BS04252.pep
MKRSTTQILTRLRELMLRAQVGDSCGISAYIVPSDDAHQSEYQCQHDERR
SFVSGFDGSAGTAVITTETALLWTDGRYYQQAEKQLDSNWVLMRDGLSAT
PSIGAWLAKNLPKGSFVGVDPRLLSFRVWKPIETELSSAECQLVPIEGNL
IDEVWGEDQPPQTSNKIITLKLEHSGVTIAKKWDVVRQQLKEKNADALVV
SALDEIAWFLNLRGSDIDFNPVFFSYLIVTNDELLLFVDSGKLPTDFVQH
QKENNVQISVLPYASIGIEISKIVSTRESKIWIAPTSSYYLTALIPKSRR
IQEVTPICVLKAIKNDVEIAGFINSHIRDGVALCQYFAWLEDQVNKGAEV
DEMSGADKLESFRSTKDKYMGLSFTTISASGPNGSVIHYHPKKETNRKIN
DKEIYLCDSGAQYLDGTTDVTRTLHFGEPTEFQKEAYTRVLKGQLSFGST
VFPAKVKGQVLDTLARKALWDVGLDYGHGTGHGVGHFLNVHEGPMGVGIR
LMPDDPGLQANMFISNEPGFYQDGEFGIRVEDIVQIVPGQVAHNFSNRGA
LTFKTITMCPKQTKMIKKELLSDAEVKLLNSYHQQVWDTLSPILSREGDE
FTLSWLKKEVQPI*
BS04252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ApepP-PB | 613 | CG6291-PB | 1..613 | 1..613 | 3199 | 100 | Plus |
| ApepP-PA | 613 | CG6291-PA | 1..613 | 1..613 | 3199 | 100 | Plus |
| CG6225-PB | 704 | CG6225-PB | 52..660 | 9..613 | 830 | 31.4 | Plus |
| CG6225-PA | 704 | CG6225-PA | 52..660 | 9..613 | 830 | 31.4 | Plus |
