Clone Sequence Records
BS04254.3prime Sequence
927 bp (838 high quality bases) assembled on 2005-12-01
> BS04254.3prime
ATGGTCTAGAAAGCTTTTAGACGGCCACTATCTTGCTGGGATCCACTTTC
ACGCGCAGAAACACGGTATCGCCCTTGATGAAGGGTCGGCTGTGCAGCAG
TTCGTGGGAGATGAAGCGTGGGAAGCCGAATCCTAGCTGATCTGGTTCGT
TGGACGGCCTCTGGAAGTTCTCCCAGGTGGGATCGGGGACGAAGGATTCC
GCCACGCCTCCCTGGCCACTTTGGGCGCCCTGTTCGAACAGTGTGAAGGT
GATGGAGTGCGAGAATGGCCACTTGAGCAGAGCATCGTACTCTCCCGGCA
GGACCTTTATGTAGACGGAGACGTGCGTGTTTTCCCCAGGTCCATTGCCA
TTGAGGAACATCGACGCCTGCAGCTTGTATCCATACTGGGAGGTGTAGAA
CGGGGGTGAGACTAGCTCCAGGCCATCCTTGCCCCTCGCTTCGGCCATCT
TAGCCGACCAGTCGGTGATCTTCCACAACAGAGTGCCTGTGTAGTTGATG
GACAGCTTGGACACCGCCGACTTGAGCATCTGGATCTGCTGACCCTGGCG
CGAGCTGAGGGCCACCATCAGCGAGAGATGAGCGGCGGCGTTGCTCTCCA
GATGGGCCTCCAGCATCTGGCGTGGACCCTTGAAGCGGCATCCCGCCTCC
TTGAAGCTGCAGGACACGGCTAGCGACTGGCATTCATCACGCAAATGCGC
CTCTAGCTCACCCCGGGGAATCGGACCAGCATCGCATCTCTGCGGGCAGG
CCAACGGGGCTCTTGGGCACTGGGCGGCATGCAAGGGCAGTGTGTCAGCC
GAGAATTCCCGCTGGCAGTGGGCACAACGACGGAGTCGCTTGGCACAGTC
CTTCGACTTGTGAAGGGTCATCCTGCCGCGCAGTATCCGCTGGCCGCACT
TGGCCTCGCAGTAAACCGGCTCCTGGC
BS04254.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3048-PA | 1461 | Traf1-RA | 551..1461 | 927..17 | 4555 | 100 | Minus |
| CG3048-PB | 1239 | Traf1-RB | 329..1239 | 927..17 | 4555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf4-RE | 2675 | CG3048-RE | 1148..2058 | 927..17 | 4555 | 100 | Minus |
| Traf4-RA | 2361 | CG3048-RA | 834..1744 | 927..17 | 4555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4379189..4380099 | 927..17 | 4555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:56:32 has no hits.
BS04254.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:55 Download gff for
BS04254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf1-PA | 551..1461 | 17..927 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:57 Download gff for
BS04254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3048-PB | 329..1239 | 17..927 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:10:10 Download gff for
BS04254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 834..1744 | 17..927 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:01 Download gff for
BS04254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 834..1744 | 17..927 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:01 Download gff for
BS04254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4379189..4380099 | 17..927 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:10:10 Download gff for
BS04254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4379189..4380099 | 17..927 | 100 | | Minus |
BS04254.5prime Sequence
885 bp (751 high quality bases) assembled on 2005-11-29
> BS04254.5prime
GAAGTTATCAGTCGACATGGTTCGAAGTTTGGCCCAGTGGACGAAGACGC
TGAGCTTCCCCTCGCGTCTCTCGCCCAATCGCAACTCCAAGGACTGCTCC
ACTCTGGCCAGTCCCGTACCGCCACCAACTCCCCCCCGGAACAAGACGAC
CTCCGGCAGTGGAAACTGCGCCACATCGCGCTCCTCCTCGTCGACGGTGT
CCTCATCGCACTCGTCCTCACACAGTTCACCCACTCCTGGGAACAACAAC
AACAACATGCCCATCACGGAACTGGAACAGATTATCTATCCCGGTCCCGA
TCCAAAACACATTATGGGCTCCTTGGTCTTTTGCATTCATCACAAACAGG
GCTGCAAGTGGTCCGATGAGCTGCGAAAGCTGAAGGGACATCTCAACGCC
TGTAAGCACGATGCCACCCAGTGCCCCAACAAGTGCGGAGCCCAGATTCC
CCGCATCATGATGACCGATCATCTCCAGTACACCTGCACGATGAGGCGTA
CCCGCTGCGAGTTCTGCCAGAGCGAATTCTCCGGTGCTGGCCTAGAGGAG
CACAACGGAAGCTGCGGCCAGGAGCCGGTTTACTGCGAGGCCAAGTGCGG
CCAGCGGATACTGCGCGGCAGGATGACCCTTCACAAGTCGAAGGACTGTG
CCAAGCGACTCCGTCGTTGTGCCCACTGCCAGCGGGAATTCTCGGCTGAC
ACACTGCCCTTGCATGCCGCCCAGTGCCCAAGAGCCCCGTTGGCCTGCCC
GCAGAGATGCGATGCTGGTCCGATTCCCCGGGGTGAGCTAGAGGCGCATT
TGCGTGATGAATGCCAGTCGCTAGCCGTGTCCTGCAGCTTCAAGGAGGCG
GGATGCCGCTTCAGGGGCCACGCCAGATGCTGGAG
BS04254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3048-PA | 1461 | Traf1-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
| CG3048-PB | 1239 | Traf1-RB | 46..625 | 284..863 | 2900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf4-RA | 2361 | CG3048-RA | 284..1153 | 17..885 | 4310 | 99.8 | Plus |
| Traf4-RE | 2675 | CG3048-RE | 865..1467 | 284..885 | 2975 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4378906..4379508 | 284..885 | 2950 | 99.7 | Plus |
| 2L | 23513712 | 2L | 4372273..4372539 | 17..283 | 1335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:02:29 has no hits.
BS04254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:43:56 Download gff for
BS04254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf1-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:03:58 Download gff for
BS04254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3048-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:24:07 Download gff for
BS04254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 284..1153 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:16 Download gff for
BS04254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 284..1153 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:16 Download gff for
BS04254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4372273..4372539 | 17..283 | 100 | -> | Plus |
| 2L | 4378906..4379508 | 284..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:24:07 Download gff for
BS04254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4372273..4372539 | 17..283 | 100 | -> | Plus |
| arm_2L | 4378906..4379508 | 284..885 | 99 | | Plus |
BS04254.complete Sequence
1493 bp (1493 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634901
> BS04254.complete
GAAGTTATCAGTCGACATGGTTCGAAGTTTGGCCCAGTGGACGAAGACGC
TGAGCTTCCCCTCGCGTCTCTCGCCCAATCGCAACTCCAAGGACTGCTCC
ACTCTGGCCAGTCCCGTACCGCCACCAACTCCCCCCCGGAACAAGACGAC
CTCCGGCAGTGGAAACTGCGCCACATCGCGCTCCTCCTCGTCGACGGTGT
CCTCATCGCACTCGTCCTCACACAGTTCACCCACTCCTGGGAACAACAAC
AACAACATGCCCATCACGGAACTGGAACAGATTATCTATCCCGGTCCCGA
TCCAAAACACATTATGGGCTCCTTGGTCTTTTGCATTCATCACAAACAGG
GCTGCAAGTGGTCCGATGAGCTGCGAAAGCTGAAGGGACATCTCAACGCC
TGTAAGCACGATGCCACCCAGTGCCCCAACAAGTGCGGAGCCCAGATTCC
CCGCATCATGATGACCGATCATCTCCAGTACACCTGCACGATGAGGCGTA
CCCGCTGCGAGTTCTGCCAGAGCGAATTCTCCGGTGCTGGCCTAGAGGAG
CACAACGGAAGCTGCGGCCAGGAGCCGGTTTACTGCGAGGCCAAGTGCGG
CCAGCGGATACTGCGCGGCAGGATGACCCTTCACAAGTCGAAGGACTGTG
CCAAGCGACTCCGTCGTTGTGCCCACTGCCAGCGGGAATTCTCGGCTGAC
ACACTGCCCTTGCATGCCGCCCAGTGCCCAAGAGCCCCGTTGGCCTGCCC
GCAGAGATGCGATGCTGGTCCGATTCCCCGGGGTGAGCTAGAGGCGCATT
TGCGTGATGAATGCCAGTCGCTAGCCGTGTCCTGCAGCTTCAAGGAGGCG
GGATGCCGCTTCAAGGGTCCACGCCAGATGCTGGAGGCCCATCTGGAGAG
CAACGCCGCCGCTCATCTCTCGCTGATGGTGGCCCTCAGCTCGCGCCAGG
GTCAGCAGATCCAGATGCTCAAGTCGGCGGTGTCCAAGCTGTCCATCAAC
TACACAGGCACTCTGTTGTGGAAGATCACCGACTGGTCGGCTAAGATGGC
CGAAGCGAGGGGCAAGGATGGCCTGGAGCTAGTCTCACCCCCGTTCTACA
CCTCCCAGTATGGATACAAGCTGCAGGCGTCGATGTTCCTCAATGGCAAT
GGACCTGGGGAAAACACGCACGTCTCCGTCTACATAAAGGTCCTGCCGGG
AGAGTACGATGCTCTGCTCAAGTGGCCATTCTCGCACTCCATCACCTTCA
CACTGTTCGAACAGGGCGCCCAAAGTGGCCAGGGAGGCGTGGCGGAATCC
TTCGTCCCCGATCCCACCTGGGAGAACTTCCAGAGGCCGTCCAACGAACC
AGATCAGCTAGGATTCGGCTTCCCACGCTTCATCTCCCACGAACTGCTGC
ACAGCCGACCCTTCATCAAGGGCGATACCGTGTTTCTGCGCGTGAAAGTG
GATCCCAGCAAGATAGTGGCCGTCTAAAAGCTTTCTAGACCAT
BS04254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf4-RA | 1461 | CG3048-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
| Traf4-RE | 1434 | CG3048-PE | 241..1434 | 284..1477 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf4-RA | 2361 | CG3048-RA | 284..1744 | 17..1477 | 7305 | 100 | Plus |
| Traf4-RE | 2675 | CG3048-RE | 865..2058 | 284..1477 | 5970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4378906..4380099 | 284..1477 | 5970 | 100 | Plus |
| 2L | 23513712 | 2L | 4372273..4372539 | 17..283 | 1335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:24:34 has no hits.
BS04254.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:37 Download gff for
BS04254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 1..1461 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:56 Download gff for
BS04254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 284..1744 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:15 Download gff for
BS04254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 284..1742 | 17..1475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:37 Download gff for
BS04254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 284..1744 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:51 Download gff for
BS04254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 284..1742 | 17..1475 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:51 Download gff for
BS04254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4372273..4372539 | 17..283 | 100 | -> | Plus |
| 2L | 4378906..4380097 | 284..1475 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:15 Download gff for
BS04254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4372273..4372539 | 17..283 | 100 | -> | Plus |
| arm_2L | 4378906..4380097 | 284..1475 | 100 | | Plus |
BS04254.pep Sequence
Translation from 16 to 1476
> BS04254.pep
MVRSLAQWTKTLSFPSRLSPNRNSKDCSTLASPVPPPTPPRNKTTSGSGN
CATSRSSSSTVSSSHSSSHSSPTPGNNNNNMPITELEQIIYPGPDPKHIM
GSLVFCIHHKQGCKWSDELRKLKGHLNACKHDATQCPNKCGAQIPRIMMT
DHLQYTCTMRRTRCEFCQSEFSGAGLEEHNGSCGQEPVYCEAKCGQRILR
GRMTLHKSKDCAKRLRRCAHCQREFSADTLPLHAAQCPRAPLACPQRCDA
GPIPRGELEAHLRDECQSLAVSCSFKEAGCRFKGPRQMLEAHLESNAAAH
LSLMVALSSRQGQQIQMLKSAVSKLSINYTGTLLWKITDWSAKMAEARGK
DGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDAL
LKWPFSHSITFTLFEQGAQSGQGGVAESFVPDPTWENFQRPSNEPDQLGF
GFPRFISHELLHSRPFIKGDTVFLRVKVDPSKIVAV*
BS04254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf4-PA | 486 | CG3048-PA | 1..486 | 1..486 | 2627 | 100 | Plus |
| Traf4-PE | 477 | CG3048-PE | 2..477 | 33..486 | 2174 | 86.6 | Plus |
| Traf-like-PE | 395 | CG4394-PE | 252..393 | 328..478 | 164 | 29.8 | Plus |
| Traf-like-PD | 395 | CG4394-PD | 252..393 | 328..478 | 164 | 29.8 | Plus |
| Traf-like-PG | 395 | CG4394-PG | 252..393 | 328..478 | 164 | 29.8 | Plus |
