Clone Sequence Records
BS04258.3prime Sequence
913 bp (819 high quality bases) assembled on 2005-12-01
> BS04258.3prime
ATGGTCTAGAAAGCTTTTAGGAATTACTGAATTTCTCGTCGCTAGTCAGA
ACGTTGTATGCACAGCCGAGGGCCCAGGAGATTTCGTGGCCATCTATCTT
CTTGTAAAGCTTAATCTTCTTGCCATCGTTGAGGCCAAATCCTTCGCGCA
GCAGCGTCGAGATGAAGGTAAGGTCGAAGCACATGAAGGGCTGCTCATCG
TTGGGAATGGCACAGATCTCCTGGGCCTTCTTGCGATAAGCTTCCACCGT
GGTCTCGCCGCCAGCCAGTGGATCCACCAGACCCGACTCGATGGCCCGCT
CAAAGTAGTAGCTGAACGCGGCCACCGCGTGCTGCTTGAGTGTGAACGGC
TTGGGCTTGACCAGCGGCATTACCTTGCTCTTGACCAGCTCCAGGCAGGC
ATCGAAGTCCACAATGGGCTGCTCGGCACTGGACTTGCCATTCTCCTTGC
CGCTGACCTTGTACTGCACATTGCCGTATGTCCACGTGCGATTGGCGATT
ATGGGATTCACGCAGACGCTCTCCAGCACCGTATCCTCCTTCTTGTAGCC
GTGCGTGAAGACAGCATGGCGTGCAGCCATTAGACCCAGTCCCAGATAGC
TGTGCGTGAAGACGTTGATCTTCTTGCTGGACGTGACCACCTCGTGCATG
TACTTATCGTACACGGGCACCTGGTCCGGATCCGTTGGCGAGAAGGTTAC
CTGCGTGCTACCGCCGCCCAAGTCCAAGGCAGCTGCCTGGTTCGTCTTGG
ACAGGCGGCCCAGCAGGAAGTTCACGGTAAACCAGCTGAAGATGCCCTCG
TCCGTGCCGTCCATGATCTCCACGGCATCCATATCCACACTAAACTCGGA
CTTGGCGAAGAGATCTCGGACGGCATTTAAAATGTTTTCCGCCTTGCTGG
CGGGCAGGAGTCT
BS04258.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3059-PB | 1395 | NTPase-RB | 499..1395 | 913..17 | 4460 | 99.8 | Minus |
| CG3059-PA | 1386 | NTPase-RA | 490..1386 | 913..17 | 4460 | 99.8 | Minus |
| CG3059-PD | 816 | NTPase-RD | 1..816 | 832..17 | 4080 | 100 | Minus |
| CG3059-PC | 816 | NTPase-RC | 1..816 | 832..17 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NTPase-RF | 2291 | CG3059-RF | 871..1767 | 913..17 | 4470 | 99.9 | Minus |
| NTPase-RE | 2111 | CG3059-RE | 691..1587 | 913..17 | 4470 | 99.9 | Minus |
| NTPase-RA | 2095 | CG3059-RA | 676..1572 | 913..17 | 4470 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2881382..2882185 | 110..913 | 4005 | 99.9 | Plus |
| 2L | 23513712 | 2L | 2881228..2881322 | 17..111 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:35:44 has no hits.
BS04258.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:01 Download gff for
BS04258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3059-PB | 499..1395 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:04 Download gff for
BS04258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3059-PA | 490..1386 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:27:32 Download gff for
BS04258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NTPase-RA | 676..1579 | 8..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:45 Download gff for
BS04258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NTPase-RA | 676..1579 | 8..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:45 Download gff for
BS04258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2881221..2881320 | 8..109 | 96 | <- | Plus |
| 2L | 2881382..2882185 | 110..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:27:32 Download gff for
BS04258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2881221..2881320 | 8..109 | 96 | <- | Plus |
| arm_2L | 2881382..2882185 | 110..913 | 99 | | Plus |
BS04258.5prime Sequence
931 bp (760 high quality bases) assembled on 2005-11-29
> BS04258.5prime
GAAGTTATCAGTCGACATGAAATACGAATATAAGCTGCTGGCCACGGATG
AGAAGCCACCGCGGCGGAAAAGTAGCGGATCACCAAATGCCAGCAGTGGT
GGAAACCGCGGGCCCAGCGGCCTCAAGATCTCCTTCCTGTGCCTGATCAT
CTCCGTCATCCTCCTGCTCTTTGTCTTTGGCTTCGTCTCCGAGAACGCCA
GTCCGTATCTGGCCCGTTTGGCCTCCAAGTTTGGCTACAGCAAGGTGCAG
TATGCGGCCATCATCGATGCCGGATCGACGGGCAGCCGTGTGCTGGCCTA
CAAGTTCAATCGCAGCTTCATCGACAACAAACTGGTGCTGTACGAGGAGC
TGTTCAAGGAGCGCAAGCCGGGTCTGAGCTCCTTCGCGGATAATCCCGCC
GAGGGTGCCCACTCCATCAAACTGCTGCTGGACGAGGCCCGCGCCTTCAT
ACCCAAGGAGCACTGGTCTTCCACACCGCTGGTTCTGAAAGCGACCGCCG
GCCTGAGACTCCTGCCCGCCAGCAAGGCGGAAAACATTCTAAATGCCGTC
CGAGATCTCTTCGCCAAGTCCGAGTTTAGTGTGGATATGGATGCCGTGGA
GATCATGGACGGCACGGACGAGGGCATCTTCAGCTGGTTTACCGTGAACT
TCCTGCTGGGCCGCCTGTCCAAGACGAACCAGGCAGCTGCCTTGGACTTG
GGCGGCGGTAGCACGCAGGTAACCTTCTCGCCAACGGATCCGGACCAGGT
GCCCGTGTACGATAAGTACATGCACGAGGTGGTCACGTCCAGCAAGAAGA
TCAACGTCTTCACGCACAGCTATCTGGGACTGGGTCTAATGGCTGCACGC
CTTGCTGTCTTCACGCACGGCTACAAGAAAGAGGATACGGTGCTGGAAAG
CGTCTGCGTGAATCCATAATCGCCAATCGCA
BS04258.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3059-PA | 1386 | NTPase-RA | 1..899 | 17..915 | 4420 | 99.6 | Plus |
| CG3059-PB | 1395 | NTPase-RB | 31..908 | 38..915 | 4315 | 99.6 | Plus |
| CG3059-PD | 816 | NTPase-RD | 1..329 | 587..915 | 1570 | 99 | Plus |
| CG3059-PC | 816 | NTPase-RC | 1..329 | 587..915 | 1570 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:20:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NTPase-RA | 2095 | CG3059-RA | 186..1102 | 16..931 | 4515 | 99.6 | Plus |
| NTPase-RC | 2182 | CG3059-RC | 293..1188 | 37..931 | 4410 | 99.6 | Plus |
| NTPase-RD | 2107 | CG3059-RD | 218..1113 | 37..931 | 4410 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:20:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2881759..2882512 | 931..179 | 3675 | 99.5 | Minus |
| 2L | 23513712 | 2L | 2882691..2882834 | 180..37 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:20:08 has no hits.
BS04258.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:02 Download gff for
BS04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3059-PA | 1..915 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:05 Download gff for
BS04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3059-PA | 1..915 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:19:20 Download gff for
BS04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NTPase-RA | 186..1101 | 16..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:37:08 Download gff for
BS04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NTPase-RA | 186..1101 | 16..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:37:08 Download gff for
BS04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2881760..2882511 | 180..930 | 99 | <- | Minus |
| 2L | 2882692..2882833 | 38..179 | 100 | <- | Minus |
| 2L | 2882920..2882941 | 16..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:19:20 Download gff for
BS04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2881760..2882511 | 180..930 | 99 | <- | Minus |
| arm_2L | 2882692..2882833 | 38..179 | 100 | <- | Minus |
| arm_2L | 2882920..2882941 | 16..37 | 100 | | Minus |
BS04258.complete Sequence
1418 bp (1418 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634902
> BS04258.complete
GAAGTTATCAGTCGACATGAAATACGAATATAAGCTGCTGGCCACGGATG
AGAAGCCACCGCGGCGGAAAAGTAGCGGATCACCAAATGCCAGCAGTGGT
GGAAACCGCGGGCCCAGCGGCCTCAAGATCTCCTTCCTGTGCCTGATCAT
CTCCGTCATCCTCCTGCTCTTTGTCTTTGGCTTCGTCTCCGAGAACGCCA
GTCCGTATCTGGCCCGTTTGGCCTCCAAGTTTGGCTACAGCAAGGTGCAG
TATGCGGCCATCATCGATGCCGGATCGACGGGCAGCCGTGTGCTGGCCTA
CAAGTTCAATCGCAGCTTCATCGACAACAAACTGGTGCTGTACGAGGAGC
TGTTCAAGGAGCGCAAGCCGGGTCTGAGCTCCTTCGCGGATAATCCCGCC
GAGGGTGCCCACTCCATCAAACTGCTGCTGGACGAGGCCCGCGCCTTCAT
ACCCAAGGAGCACTGGTCTTCCACACCGCTGGTTCTGAAAGCGACCGCCG
GCCTGAGACTCCTGCCCGCCAGCAAGGCGGAAAACATTCTAAATGCCGTC
CGAGATCTCTTCGCCAAGTCCGAGTTTAGTGTGGATATGGATGCCGTGGA
GATCATGGACGGCACGGACGAGGGCATCTTCAGCTGGTTTACCGTGAACT
TCCTGCTGGGCCGCCTGTCCAAGACGAACCAGGCAGCTGCCTTGGACTTG
GGCGGCGGTAGCACGCAGGTAACCTTCTCGCCAACGGATCCGGACCAGGT
GCCCGTGTACGATAAGTACATGCACGAGGTGGTCACGTCCAGCAAGAAGA
TCAACGTCTTCACGCACAGCTATCTGGGACTGGGTCTAATGGCTGCACGC
CATGCTGTCTTCACGCACGGCTACAAGAAGGAGGATACGGTGCTGGAGAG
CGTCTGCGTGAATCCCATAATCGCCAATCGCACGTGGACATACGGCAATG
TGCAGTACAAGGTCAGCGGCAAGGAGAATGGCAAGTCCAGTGCCGAGCAG
CCCATTGTGGACTTCGATGCCTGCCTGGAGCTGGTCAAGAGCAAGGTAAT
GCCGCTGGTCAAGCCCAAGCCGTTCACACTCAAGCAGCACGCGGTGGCCG
CGTTCAGCTACTACTTTGAGCGGGCCATCGAGTCGGGTCTGGTGGATCCA
CTGGCTGGCGGCGAGACCACGGTGGAAGCTTATCGCAAGAAGGCCCAGGA
GATCTGTGCCATTCCCAACGATGAGCAGCCCTTCATGTGCTTCGACCTTA
CCTTCATCTCGACGCTGCTGCGCGAAGGATTTGGCCTCAACGATGGCAAG
AAGATTAAGCTTTACAAGAAGATAGATGGCCACGAAATCTCCTGGGCCCT
CGGCTGTGCATACAACGTTCTGACTAGCGACGAGAAATTCAGTAATTCCT
AAAAGCTTTCTAGACCAT
BS04258.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NTPase-RA | 1386 | CG3059-PA | 1..1386 | 17..1402 | 6930 | 100 | Plus |
| NTPase-RE | 1395 | CG3059-PE | 31..1395 | 38..1402 | 6825 | 100 | Plus |
| NTPase-RF | 1575 | CG3059-PF | 352..1575 | 179..1402 | 6120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NTPase-RA | 2095 | CG3059-RA | 186..1572 | 16..1402 | 6935 | 100 | Plus |
| NTPase-RC | 2182 | CG3059-RC | 293..1658 | 37..1402 | 6830 | 100 | Plus |
| NTPase-RD | 2107 | CG3059-RD | 218..1583 | 37..1402 | 6830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2881382..2882512 | 1309..179 | 5655 | 100 | Minus |
| 2L | 23513712 | 2L | 2882691..2882834 | 180..37 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 2881228..2881322 | 1402..1308 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:58:44 has no hits.
BS04258.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:39 Download gff for
BS04258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NTPase-RA | 1..1386 | 17..1402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:59 Download gff for
BS04258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NTPase-RA | 173..1566 | 16..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:13 Download gff for
BS04258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NTPase-RA | 187..1570 | 17..1400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:39 Download gff for
BS04258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NTPase-RA | 173..1566 | 16..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:09 Download gff for
BS04258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NTPase-RA | 187..1570 | 17..1400 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:09 Download gff for
BS04258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2881230..2881320 | 1310..1400 | 100 | <- | Minus |
| 2L | 2881382..2882511 | 180..1309 | 100 | <- | Minus |
| 2L | 2882692..2882833 | 38..179 | 100 | <- | Minus |
| 2L | 2882920..2882940 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:13 Download gff for
BS04258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2881230..2881320 | 1310..1400 | 100 | <- | Minus |
| arm_2L | 2882692..2882833 | 38..179 | 100 | <- | Minus |
| arm_2L | 2881382..2882511 | 180..1309 | 100 | <- | Minus |
| arm_2L | 2882920..2882940 | 17..37 | 100 | | Minus |
BS04258.pep Sequence
Translation from 16 to 1401
> BS04258.pep
MKYEYKLLATDEKPPRRKSSGSPNASSGGNRGPSGLKISFLCLIISVILL
LFVFGFVSENASPYLARLASKFGYSKVQYAAIIDAGSTGSRVLAYKFNRS
FIDNKLVLYEELFKERKPGLSSFADNPAEGAHSIKLLLDEARAFIPKEHW
SSTPLVLKATAGLRLLPASKAENILNAVRDLFAKSEFSVDMDAVEIMDGT
DEGIFSWFTVNFLLGRLSKTNQAAALDLGGGSTQVTFSPTDPDQVPVYDK
YMHEVVTSSKKINVFTHSYLGLGLMAARHAVFTHGYKKEDTVLESVCVNP
IIANRTWTYGNVQYKVSGKENGKSSAEQPIVDFDACLELVKSKVMPLVKP
KPFTLKQHAVAAFSYYFERAIESGLVDPLAGGETTVEAYRKKAQEICAIP
NDEQPFMCFDLTFISTLLREGFGLNDGKKIKLYKKIDGHEISWALGCAYN
VLTSDEKFSNS*
BS04258.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NTPase-PA | 461 | CG3059-PA | 1..461 | 1..461 | 2373 | 100 | Plus |
| NTPase-PE | 464 | CG3059-PE | 11..464 | 8..461 | 2335 | 100 | Plus |
| NTPase-PF | 524 | CG3059-PF | 11..524 | 8..461 | 2122 | 84 | Plus |
| NTPase-PC | 271 | CG3059-PC | 1..271 | 191..461 | 1421 | 100 | Plus |
| NTPase-PD | 271 | CG3059-PD | 1..271 | 191..461 | 1421 | 100 | Plus |
