Clone BS04260 Report

Search the DGRC for BS04260

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:60
Vector:pDNR-Dual
Associated Gene/Transcriptpolo-RA
Protein status:BS04260.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04260.3prime Sequence

875 bp (874 high quality bases) assembled on 2005-12-01

> BS04260.3prime
ATGGTCTAGAAAGCTTTTATGTGAACATCTTCTCCAGCATTTTCCTAAGT
TTCTCCTGGGCATATCGGATCTTCTGGTACAAGTCTTTAGACACGCCGTT
CTCCACAATGGTCGAAAATCGGTAGGTGCGGAAGTTCTTCTCCTGGTCCA
TATAGGTTATAGCACTCATGCGCGGGCAGAGGATGAGCTTCATGTGATCT
GAGAAGTTTAGCTGCACAGAACCGTTGGTCAAATGCATAACTACGGCACA
TGTTGTACGGAACCAGGAGTGTAAATGGGGCATACGCGAGATTTGATCGC
TCTCAATGTTCACATTGTTGGCACCTGCCTTCACCAGGTGCTCGATCATG
TAGCGCTTAAAGTACGACAGCAGCTTCATCTTCTTGTCAAGCGACTTGCA
GTAATCCGTGGTGGTCATGTACGTCTCCTTGCCATCCTTGTCGATGAAGT
GTACGTTGATCTGATTCGGCAGCAGGATCAGCTTTGTGGTGTCGTTGAAC
ATCACGCCGATGCCCTCATCGCACAGCTGGTAACCAAATCCGTACTTGTC
GCTGTAGTCAACCCACTTGGATATCCAGAAGAGCGGCTGCGCTGCAGGAT
CTGTGTTCTCGTCGCCCAGATTGCCTTGCAGAATTCGCGGCTTTCCGTTG
ATAAGATTAGTGAGCTGCTGGTACAGGCTCTCGATATCGCTGCGATAGTC
CTCGCTGTGGCGGCACACCTGCGCTGACGCGGTAATGGCGTCGTGCAGAT
TGGCCTTGAGGAAGGTCGACTCCAGACGAGTGTCGTCGGGCCTGATGCCG
TTCATCTCCATCAGTGGCTTGCGGTGCATCGAATCCTCGATGGTGTCGTT
GCTGCCGATACGCGGCGCCATTGTC

BS04260.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12306-PA 1731 polo-RA 873..1731 875..17 4295 100 Minus
CG12306-PB 1731 polo-RB 873..1731 875..17 4295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
polo-RB 2324 CG12306-RB 1136..1994 875..17 4295 100 Minus
polo-RA 2980 CG12306-RA 1529..2387 875..17 4295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20312181..20312611 642..212 2155 100 Minus
3L 28110227 3L 20311883..20312117 875..641 1175 100 Minus
3L 28110227 3L 20312677..20312873 213..17 985 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:30:34 has no hits.

BS04260.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:03 Download gff for BS04260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12306-PA 873..1731 17..875 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:07 Download gff for BS04260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12306-PB 873..1731 17..875 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:05:40 Download gff for BS04260.3prime
Subject Subject Range Query Range Percent Splice Strand
polo-RA 1529..2389 13..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:28 Download gff for BS04260.3prime
Subject Subject Range Query Range Percent Splice Strand
polo-RA 1529..2389 13..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:28 Download gff for BS04260.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20311883..20312117 641..875 100 -> Minus
3L 20312183..20312611 212..640 100 -> Minus
3L 20312679..20312875 13..211 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:05:40 Download gff for BS04260.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20304983..20305217 641..875 100 -> Minus
arm_3L 20305283..20305711 212..640 100 -> Minus
arm_3L 20305779..20305975 13..211 98   Minus

BS04260.5prime Sequence

854 bp (852 high quality bases) assembled on 2005-12-01

> BS04260.5prime
GAAGTTATCAGTCGACATGGCCGCGAAGCCCGAGGATAAGAGCACGGATA
TTCCGGATCGCCTCGTCGACATCAACCAGCGGAAAACCTACAAGCGCATG
CGGTTCTTCGGCAAGGGCGGGTTTGCAAAATGTTACGAGATCATCGATGT
GGAAACCGACGACGTCTTCGCCGGCAAGATCGTATCCAAGAAGCTGATGA
TCAAACACAATCAGAAGGAGAAGACCGCCCAGGAGATAACTATTCACCGC
AGCCTTAACCATCCGAACATTGTCAAGTTTCACAACTACTTTGAAGATTC
GCAGAATATCTACATTGTGCTGGAGCTGTGCAAGAAAAGATCCATGATGG
AGCTGCACAAACGTAGGAAAAGCATTACGGAGTTCGAATGCCGCTACTAC
ATTTACCAGATAATCCAGGGCGTTAAGTACTTGCACGATAACCGCATTAT
CCATCGAGATCTGAAGCTGGGCAATCTCTTCCTCAACGATTTGTTGCACG
TGAAGATCGGGGATTTCGGGTTGGCCACGCGCATTGAGTATGAGGGCGAG
CGAAAAAAGACCTTATGCGGAACGCCCAACTATATAGCCCCGGAGATCCT
CACCAAGAAGGGCCACTCCTTCGAGGTGGACATCTGGTCGATTGGCTGCG
TCATGTACACACTGCTTGTGGGCCAGCCGCCGTTCGAAACCAAGACTCTG
AAGGATACGTACTCGAAAATCAAGAAGTGCGAGTACCGCGTGCCCAGCTA
CTTAAGGAAACCGGCGGCGGATATGGTCATCGCCATGCTGCAGCCAAATC
CGGAGAGCCGCCCGGCAATTGGTCAGCTGCTGAACTTTGAGTTCCTCAGG
GGCT

BS04260.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12306-PA 1731 polo-RA 1..838 17..854 4165 99.8 Plus
CG12306-PB 1731 polo-RB 1..838 17..854 4165 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
polo-RA 2980 CG12306-RA 657..1494 17..854 4175 99.9 Plus
polo-RB 2324 CG12306-RB 264..1101 17..854 4175 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20311335..20311848 341..854 2555 99.8 Plus
3L 28110227 3L 20311047..20311273 114..340 1135 100 Plus
3L 28110227 3L 20310310..20310409 17..116 500 100 Plus
Blast to na_te.dros performed on 2015-02-02 12:23:28 has no hits.

BS04260.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:04 Download gff for BS04260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12306-PA 1..838 17..854 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:08 Download gff for BS04260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12306-PB 1..838 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:49:02 Download gff for BS04260.5prime
Subject Subject Range Query Range Percent Splice Strand
polo-RA 651..1494 10..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:27 Download gff for BS04260.5prime
Subject Subject Range Query Range Percent Splice Strand
polo-RA 651..1494 10..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:27 Download gff for BS04260.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20310304..20310408 10..115 97 -> Plus
3L 20311049..20311273 116..340 100 -> Plus
3L 20311335..20311848 341..854 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:49:02 Download gff for BS04260.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20303404..20303508 10..115 97 -> Plus
arm_3L 20304149..20304373 116..340 100 -> Plus
arm_3L 20304435..20304948 341..854 99   Plus

BS04260.complete Sequence

1763 bp assembled on 2008-01-02

> BS04260.complete
GAAGTTATCAGTCGACATGGCCGCGAAGCCCGAGGATAAGAGCACGGATA
TTCCGGATCGCCTCGTCGACATCAACCAGCGGAAAACCTACAAGCGCATG
CGGTTCTTCGGCAAGGGCGGGTTTGCAAAATGTTACGAGATCATCGATGT
GGAAACCGACGACGTCTTCGCCGGCAAGATCGTATCCAAGAAGCTGATGA
TCAAACACAATCAGAAGGAGAAGACCGCCCAGGAGATAACTATTCACCGC
AGCCTTAACCATCCGAACATTGTCAAGTTTCACAACTACTTTGAAGATTC
GCAGAATATCTACATTGTGCTGGAGCTGTGCAAGAAAAGATCCATGATGG
AGCTGCACAAACGTAGGAAAAGCATTACGGAGTTCGAATGCCGCTACTAC
ATTTACCAGATAATCCAGGGCGTTAAGTACTTGCACGATAACCGCATTAT
CCATCGAGATCTGAAGCTGGGCAATCTCTTCCTCAACGATTTGTTGCACG
TGAAGATCGGGGATTTCGGGTTGGCCACGCGCATTGAGTATGAGGGCGAG
CGAAAAAAGACCTTATGCGGAACGCCCAACTATATAGCCCCGGAGATCCT
CACCAAGAAGGGCCACTCCTTCGAGGTGGACATCTGGTCGATTGGCTGCG
TCATGTACACACTGCTTGTGGGCCAGCCGCCGTTCGAAACCAAGACTCTG
AAGGATACGTACTCGAAAATCAAGAAGTGCGAGTACCGCGTGCCCAGCTA
CTTAAGGAAACCGGCGGCGGATATGGTCATCGCCATGCTGCAGCCAAATC
CGGAGAGCCGCCCGGCAATTGGTCAGCTGCTGAACTTTGAGTTCCTCAAG
GGCTCAAAGGTGCCCATGTTCTTGCCCAGCTCTTGTCTGACAATGGCGCC
GCGTATCGGCAGCAACGACACCATCGAGGATTCGATGCACCGCAAGCCAC
TGATGGAGATGAACGGCATCAGGCCCGACGACACTCGTCTGGAGTCGACC
TTCCTCAAGGCCAATCTGCACGACGCCATTACCGCGTCAGCGCAGGTGTG
CCGCCACAGCGAGGACTATCGCAGCGATATCGAGAGCCTGTACCAGCAGC
TCACTAATCTTATCAACGGAAAGCCGCGAATTCTGCAAGGCAATCTGGGC
GACGAGAACACAGATCCTGCAGCGCAGCCGCTCTTCTGGATATCCAAGTG
GGTTGACTACAGCGACAAGTACGGATTTGGTTACCAGCTGTGCGATGAGG
GCATCGGCGTGATGTTCAACGACACCACAAAGCTGATCCTGCTGCCGAAT
CAGATCAACGTACACTTCATCGACAAGGATGGCAAGGAGACGTACATGAC
CACCACGGATTACTGCAAGTCGCTTGACAAGAAGATGAAGCTGCTGTCGT
ACTTTAAGCGCTACATGATCGAGCACCTGGTGAAGGCAGGTGCCAACAAT
GTGAACATTGAGAGCGATCAAATCTCGCGTATGCCCCATTTACACTCCTG
GTTCCGTACAACATGTGCCGTAGTTATGCATTTGACCAACGGTTCTGTGC
AGCTAAACTTCTCAGATCACATGAAGCTCATCCTCTGCCCGCGCATGAGT
GCTATAACCTATATGGACCAGGAGAAGAACTTCCGCACCTACCGATTTTC
GACCATTGTGGAGAACGGCGTGTCTAAAGACTTGTACCAGAAGATCCGAT
ATGCCCAGGAGAAACTTAGGAAAATGCTGGAGAAGATGTTCACATAAAAG
CTTTCTAGACCAT

BS04260.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
polo-RB 1731 CG12306-PB 1..1731 17..1747 8655 100 Plus
polo-RA 1731 CG12306-PA 1..1731 17..1747 8655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
polo-RB 2324 CG12306-RB 264..1994 17..1747 8655 100 Plus
polo-RA 2980 CG12306-RA 657..2387 17..1747 8655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20311335..20312117 341..1123 3915 100 Plus
3L 28110227 3L 20312181..20312611 1122..1552 2155 100 Plus
3L 28110227 3L 20311047..20311273 114..340 1135 100 Plus
3L 28110227 3L 20312677..20312873 1551..1747 985 100 Plus
3L 28110227 3L 20310310..20310409 17..116 500 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:57:45 has no hits.

BS04260.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:53 Download gff for BS04260.complete
Subject Subject Range Query Range Percent Splice Strand
polo-RB 1..1731 17..1747 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:37 Download gff for BS04260.complete
Subject Subject Range Query Range Percent Splice Strand
polo-RB 306..2034 17..1745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:05 Download gff for BS04260.complete
Subject Subject Range Query Range Percent Splice Strand
polo-RA 657..2385 17..1745 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:53 Download gff for BS04260.complete
Subject Subject Range Query Range Percent Splice Strand
polo-RB 300..2038 10..1751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:09 Download gff for BS04260.complete
Subject Subject Range Query Range Percent Splice Strand
polo-RA 657..2385 17..1745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:09 Download gff for BS04260.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20312679..20312871 1553..1745 100   Plus
3L 20312183..20312611 1124..1552 100 -> Plus
3L 20310310..20310408 17..115 100 -> Plus
3L 20311049..20311273 116..340 100 -> Plus
3L 20311335..20312117 341..1123 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:05 Download gff for BS04260.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20303410..20303508 17..115 100 -> Plus
arm_3L 20304149..20304373 116..340 100 -> Plus
arm_3L 20304435..20305217 341..1123 100 -> Plus
arm_3L 20305283..20305711 1124..1552 100 -> Plus
arm_3L 20305779..20305971 1553..1745 100   Plus

BS04260.pep Sequence

Translation from 16 to 1746

> BS04260.pep
MAAKPEDKSTDIPDRLVDINQRKTYKRMRFFGKGGFAKCYEIIDVETDDV
FAGKIVSKKLMIKHNQKEKTAQEITIHRSLNHPNIVKFHNYFEDSQNIYI
VLELCKKRSMMELHKRRKSITEFECRYYIYQIIQGVKYLHDNRIIHRDLK
LGNLFLNDLLHVKIGDFGLATRIEYEGERKKTLCGTPNYIAPEILTKKGH
SFEVDIWSIGCVMYTLLVGQPPFETKTLKDTYSKIKKCEYRVPSYLRKPA
ADMVIAMLQPNPESRPAIGQLLNFEFLKGSKVPMFLPSSCLTMAPRIGSN
DTIEDSMHRKPLMEMNGIRPDDTRLESTFLKANLHDAITASAQVCRHSED
YRSDIESLYQQLTNLINGKPRILQGNLGDENTDPAAQPLFWISKWVDYSD
KYGFGYQLCDEGIGVMFNDTTKLILLPNQINVHFIDKDGKETYMTTTDYC
KSLDKKMKLLSYFKRYMIEHLVKAGANNVNIESDQISRMPHLHSWFRTTC
AVVMHLTNGSVQLNFSDHMKLILCPRMSAITYMDQEKNFRTYRFSTIVEN
GVSKDLYQKIRYAQEKLRKMLEKMFT*

BS04260.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
polo-PB 576 CG12306-PB 1..576 1..576 3046 100 Plus
polo-PA 576 CG12306-PA 1..576 1..576 3046 100 Plus
SAK-PA 769 CG7186-PA 14..267 25..277 522 38.9 Plus
par-1-PV 951 CG8201-PV 253..556 25..322 404 32.4 Plus
aurA-PA 411 CG3068-PA 131..401 2..272 392 31.5 Plus