Clone Sequence Records
BS04260.3prime Sequence
875 bp (874 high quality bases) assembled on 2005-12-01
> BS04260.3prime
ATGGTCTAGAAAGCTTTTATGTGAACATCTTCTCCAGCATTTTCCTAAGT
TTCTCCTGGGCATATCGGATCTTCTGGTACAAGTCTTTAGACACGCCGTT
CTCCACAATGGTCGAAAATCGGTAGGTGCGGAAGTTCTTCTCCTGGTCCA
TATAGGTTATAGCACTCATGCGCGGGCAGAGGATGAGCTTCATGTGATCT
GAGAAGTTTAGCTGCACAGAACCGTTGGTCAAATGCATAACTACGGCACA
TGTTGTACGGAACCAGGAGTGTAAATGGGGCATACGCGAGATTTGATCGC
TCTCAATGTTCACATTGTTGGCACCTGCCTTCACCAGGTGCTCGATCATG
TAGCGCTTAAAGTACGACAGCAGCTTCATCTTCTTGTCAAGCGACTTGCA
GTAATCCGTGGTGGTCATGTACGTCTCCTTGCCATCCTTGTCGATGAAGT
GTACGTTGATCTGATTCGGCAGCAGGATCAGCTTTGTGGTGTCGTTGAAC
ATCACGCCGATGCCCTCATCGCACAGCTGGTAACCAAATCCGTACTTGTC
GCTGTAGTCAACCCACTTGGATATCCAGAAGAGCGGCTGCGCTGCAGGAT
CTGTGTTCTCGTCGCCCAGATTGCCTTGCAGAATTCGCGGCTTTCCGTTG
ATAAGATTAGTGAGCTGCTGGTACAGGCTCTCGATATCGCTGCGATAGTC
CTCGCTGTGGCGGCACACCTGCGCTGACGCGGTAATGGCGTCGTGCAGAT
TGGCCTTGAGGAAGGTCGACTCCAGACGAGTGTCGTCGGGCCTGATGCCG
TTCATCTCCATCAGTGGCTTGCGGTGCATCGAATCCTCGATGGTGTCGTT
GCTGCCGATACGCGGCGCCATTGTC
BS04260.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12306-PA | 1731 | polo-RA | 873..1731 | 875..17 | 4295 | 100 | Minus |
CG12306-PB | 1731 | polo-RB | 873..1731 | 875..17 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
polo-RB | 2324 | CG12306-RB | 1136..1994 | 875..17 | 4295 | 100 | Minus |
polo-RA | 2980 | CG12306-RA | 1529..2387 | 875..17 | 4295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:30:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20312181..20312611 | 642..212 | 2155 | 100 | Minus |
3L | 28110227 | 3L | 20311883..20312117 | 875..641 | 1175 | 100 | Minus |
3L | 28110227 | 3L | 20312677..20312873 | 213..17 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:30:34 has no hits.
BS04260.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:03 Download gff for
BS04260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12306-PA | 873..1731 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:07 Download gff for
BS04260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12306-PB | 873..1731 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:05:40 Download gff for
BS04260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
polo-RA | 1529..2389 | 13..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:28 Download gff for
BS04260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
polo-RA | 1529..2389 | 13..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:28 Download gff for
BS04260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20311883..20312117 | 641..875 | 100 | -> | Minus |
3L | 20312183..20312611 | 212..640 | 100 | -> | Minus |
3L | 20312679..20312875 | 13..211 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:05:40 Download gff for
BS04260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20304983..20305217 | 641..875 | 100 | -> | Minus |
arm_3L | 20305283..20305711 | 212..640 | 100 | -> | Minus |
arm_3L | 20305779..20305975 | 13..211 | 98 | | Minus |
BS04260.5prime Sequence
854 bp (852 high quality bases) assembled on 2005-12-01
> BS04260.5prime
GAAGTTATCAGTCGACATGGCCGCGAAGCCCGAGGATAAGAGCACGGATA
TTCCGGATCGCCTCGTCGACATCAACCAGCGGAAAACCTACAAGCGCATG
CGGTTCTTCGGCAAGGGCGGGTTTGCAAAATGTTACGAGATCATCGATGT
GGAAACCGACGACGTCTTCGCCGGCAAGATCGTATCCAAGAAGCTGATGA
TCAAACACAATCAGAAGGAGAAGACCGCCCAGGAGATAACTATTCACCGC
AGCCTTAACCATCCGAACATTGTCAAGTTTCACAACTACTTTGAAGATTC
GCAGAATATCTACATTGTGCTGGAGCTGTGCAAGAAAAGATCCATGATGG
AGCTGCACAAACGTAGGAAAAGCATTACGGAGTTCGAATGCCGCTACTAC
ATTTACCAGATAATCCAGGGCGTTAAGTACTTGCACGATAACCGCATTAT
CCATCGAGATCTGAAGCTGGGCAATCTCTTCCTCAACGATTTGTTGCACG
TGAAGATCGGGGATTTCGGGTTGGCCACGCGCATTGAGTATGAGGGCGAG
CGAAAAAAGACCTTATGCGGAACGCCCAACTATATAGCCCCGGAGATCCT
CACCAAGAAGGGCCACTCCTTCGAGGTGGACATCTGGTCGATTGGCTGCG
TCATGTACACACTGCTTGTGGGCCAGCCGCCGTTCGAAACCAAGACTCTG
AAGGATACGTACTCGAAAATCAAGAAGTGCGAGTACCGCGTGCCCAGCTA
CTTAAGGAAACCGGCGGCGGATATGGTCATCGCCATGCTGCAGCCAAATC
CGGAGAGCCGCCCGGCAATTGGTCAGCTGCTGAACTTTGAGTTCCTCAGG
GGCT
BS04260.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12306-PA | 1731 | polo-RA | 1..838 | 17..854 | 4165 | 99.8 | Plus |
CG12306-PB | 1731 | polo-RB | 1..838 | 17..854 | 4165 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:23:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
polo-RA | 2980 | CG12306-RA | 657..1494 | 17..854 | 4175 | 99.9 | Plus |
polo-RB | 2324 | CG12306-RB | 264..1101 | 17..854 | 4175 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20311335..20311848 | 341..854 | 2555 | 99.8 | Plus |
3L | 28110227 | 3L | 20311047..20311273 | 114..340 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 20310310..20310409 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:23:28 has no hits.
BS04260.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:04 Download gff for
BS04260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12306-PA | 1..838 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:08 Download gff for
BS04260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12306-PB | 1..838 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:49:02 Download gff for
BS04260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
polo-RA | 651..1494 | 10..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:27 Download gff for
BS04260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
polo-RA | 651..1494 | 10..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:27 Download gff for
BS04260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20310304..20310408 | 10..115 | 97 | -> | Plus |
3L | 20311049..20311273 | 116..340 | 100 | -> | Plus |
3L | 20311335..20311848 | 341..854 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:49:02 Download gff for
BS04260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20303404..20303508 | 10..115 | 97 | -> | Plus |
arm_3L | 20304149..20304373 | 116..340 | 100 | -> | Plus |
arm_3L | 20304435..20304948 | 341..854 | 99 | | Plus |
BS04260.complete Sequence
1763 bp assembled on 2008-01-02
> BS04260.complete
GAAGTTATCAGTCGACATGGCCGCGAAGCCCGAGGATAAGAGCACGGATA
TTCCGGATCGCCTCGTCGACATCAACCAGCGGAAAACCTACAAGCGCATG
CGGTTCTTCGGCAAGGGCGGGTTTGCAAAATGTTACGAGATCATCGATGT
GGAAACCGACGACGTCTTCGCCGGCAAGATCGTATCCAAGAAGCTGATGA
TCAAACACAATCAGAAGGAGAAGACCGCCCAGGAGATAACTATTCACCGC
AGCCTTAACCATCCGAACATTGTCAAGTTTCACAACTACTTTGAAGATTC
GCAGAATATCTACATTGTGCTGGAGCTGTGCAAGAAAAGATCCATGATGG
AGCTGCACAAACGTAGGAAAAGCATTACGGAGTTCGAATGCCGCTACTAC
ATTTACCAGATAATCCAGGGCGTTAAGTACTTGCACGATAACCGCATTAT
CCATCGAGATCTGAAGCTGGGCAATCTCTTCCTCAACGATTTGTTGCACG
TGAAGATCGGGGATTTCGGGTTGGCCACGCGCATTGAGTATGAGGGCGAG
CGAAAAAAGACCTTATGCGGAACGCCCAACTATATAGCCCCGGAGATCCT
CACCAAGAAGGGCCACTCCTTCGAGGTGGACATCTGGTCGATTGGCTGCG
TCATGTACACACTGCTTGTGGGCCAGCCGCCGTTCGAAACCAAGACTCTG
AAGGATACGTACTCGAAAATCAAGAAGTGCGAGTACCGCGTGCCCAGCTA
CTTAAGGAAACCGGCGGCGGATATGGTCATCGCCATGCTGCAGCCAAATC
CGGAGAGCCGCCCGGCAATTGGTCAGCTGCTGAACTTTGAGTTCCTCAAG
GGCTCAAAGGTGCCCATGTTCTTGCCCAGCTCTTGTCTGACAATGGCGCC
GCGTATCGGCAGCAACGACACCATCGAGGATTCGATGCACCGCAAGCCAC
TGATGGAGATGAACGGCATCAGGCCCGACGACACTCGTCTGGAGTCGACC
TTCCTCAAGGCCAATCTGCACGACGCCATTACCGCGTCAGCGCAGGTGTG
CCGCCACAGCGAGGACTATCGCAGCGATATCGAGAGCCTGTACCAGCAGC
TCACTAATCTTATCAACGGAAAGCCGCGAATTCTGCAAGGCAATCTGGGC
GACGAGAACACAGATCCTGCAGCGCAGCCGCTCTTCTGGATATCCAAGTG
GGTTGACTACAGCGACAAGTACGGATTTGGTTACCAGCTGTGCGATGAGG
GCATCGGCGTGATGTTCAACGACACCACAAAGCTGATCCTGCTGCCGAAT
CAGATCAACGTACACTTCATCGACAAGGATGGCAAGGAGACGTACATGAC
CACCACGGATTACTGCAAGTCGCTTGACAAGAAGATGAAGCTGCTGTCGT
ACTTTAAGCGCTACATGATCGAGCACCTGGTGAAGGCAGGTGCCAACAAT
GTGAACATTGAGAGCGATCAAATCTCGCGTATGCCCCATTTACACTCCTG
GTTCCGTACAACATGTGCCGTAGTTATGCATTTGACCAACGGTTCTGTGC
AGCTAAACTTCTCAGATCACATGAAGCTCATCCTCTGCCCGCGCATGAGT
GCTATAACCTATATGGACCAGGAGAAGAACTTCCGCACCTACCGATTTTC
GACCATTGTGGAGAACGGCGTGTCTAAAGACTTGTACCAGAAGATCCGAT
ATGCCCAGGAGAAACTTAGGAAAATGCTGGAGAAGATGTTCACATAAAAG
CTTTCTAGACCAT
BS04260.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
polo-RB | 1731 | CG12306-PB | 1..1731 | 17..1747 | 8655 | 100 | Plus |
polo-RA | 1731 | CG12306-PA | 1..1731 | 17..1747 | 8655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
polo-RB | 2324 | CG12306-RB | 264..1994 | 17..1747 | 8655 | 100 | Plus |
polo-RA | 2980 | CG12306-RA | 657..2387 | 17..1747 | 8655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20311335..20312117 | 341..1123 | 3915 | 100 | Plus |
3L | 28110227 | 3L | 20312181..20312611 | 1122..1552 | 2155 | 100 | Plus |
3L | 28110227 | 3L | 20311047..20311273 | 114..340 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 20312677..20312873 | 1551..1747 | 985 | 100 | Plus |
3L | 28110227 | 3L | 20310310..20310409 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:57:45 has no hits.
BS04260.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:53 Download gff for
BS04260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
polo-RB | 1..1731 | 17..1747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:37 Download gff for
BS04260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
polo-RB | 306..2034 | 17..1745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:05 Download gff for
BS04260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
polo-RA | 657..2385 | 17..1745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:53 Download gff for
BS04260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
polo-RB | 300..2038 | 10..1751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:09 Download gff for
BS04260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
polo-RA | 657..2385 | 17..1745 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:09 Download gff for
BS04260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20312679..20312871 | 1553..1745 | 100 | | Plus |
3L | 20312183..20312611 | 1124..1552 | 100 | -> | Plus |
3L | 20310310..20310408 | 17..115 | 100 | -> | Plus |
3L | 20311049..20311273 | 116..340 | 100 | -> | Plus |
3L | 20311335..20312117 | 341..1123 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:05 Download gff for
BS04260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20303410..20303508 | 17..115 | 100 | -> | Plus |
arm_3L | 20304149..20304373 | 116..340 | 100 | -> | Plus |
arm_3L | 20304435..20305217 | 341..1123 | 100 | -> | Plus |
arm_3L | 20305283..20305711 | 1124..1552 | 100 | -> | Plus |
arm_3L | 20305779..20305971 | 1553..1745 | 100 | | Plus |
BS04260.pep Sequence
Translation from 16 to 1746
> BS04260.pep
MAAKPEDKSTDIPDRLVDINQRKTYKRMRFFGKGGFAKCYEIIDVETDDV
FAGKIVSKKLMIKHNQKEKTAQEITIHRSLNHPNIVKFHNYFEDSQNIYI
VLELCKKRSMMELHKRRKSITEFECRYYIYQIIQGVKYLHDNRIIHRDLK
LGNLFLNDLLHVKIGDFGLATRIEYEGERKKTLCGTPNYIAPEILTKKGH
SFEVDIWSIGCVMYTLLVGQPPFETKTLKDTYSKIKKCEYRVPSYLRKPA
ADMVIAMLQPNPESRPAIGQLLNFEFLKGSKVPMFLPSSCLTMAPRIGSN
DTIEDSMHRKPLMEMNGIRPDDTRLESTFLKANLHDAITASAQVCRHSED
YRSDIESLYQQLTNLINGKPRILQGNLGDENTDPAAQPLFWISKWVDYSD
KYGFGYQLCDEGIGVMFNDTTKLILLPNQINVHFIDKDGKETYMTTTDYC
KSLDKKMKLLSYFKRYMIEHLVKAGANNVNIESDQISRMPHLHSWFRTTC
AVVMHLTNGSVQLNFSDHMKLILCPRMSAITYMDQEKNFRTYRFSTIVEN
GVSKDLYQKIRYAQEKLRKMLEKMFT*
BS04260.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
polo-PB | 576 | CG12306-PB | 1..576 | 1..576 | 3046 | 100 | Plus |
polo-PA | 576 | CG12306-PA | 1..576 | 1..576 | 3046 | 100 | Plus |
SAK-PA | 769 | CG7186-PA | 14..267 | 25..277 | 522 | 38.9 | Plus |
par-1-PV | 951 | CG8201-PV | 253..556 | 25..322 | 404 | 32.4 | Plus |
aurA-PA | 411 | CG3068-PA | 131..401 | 2..272 | 392 | 31.5 | Plus |