Clone BS04263 Report

Search the DGRC for BS04263

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:63
Vector:pDNR-Dual
Associated Gene/Transcriptytr-RA
Protein status:BS04263.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04263.5prime Sequence

615 bp (614 high quality bases) assembled on 2005-11-29

> BS04263.5prime
GAAGTTATCAGTCGACATGGGCCGCAGCCGAAGTCCCGCCTCGCCGGCGC
ACAGGAGACGCGAGAAGGAGCGATCCGAGCGGAAGAAGCGCAGGGAGCGC
CGTTCCCGGGAGCGGGAGGCCATCGGAGTAGCGCCAGCCGGAGGATCCGG
ATCTGGAGGCGCCGGTCGCCGCGACCGGGAACGGGATCGCGACCGCAGTC
GCAGCCGAGATCGGGAGCGGGAACGGGAGCGCGACCGTGCGCGGAGTCGG
CGATCTAGATCGCGGTCGAGGGTCGCCGGAGGAGGAGGAGGAGGAGGCGG
CGGCGGAAGCAGCGGCGGCAACAGCAGCTCCGGACCATCGACGTCGCGAA
GGACGACGAGGAACAATGCGGCGGCCACAGCTGCCGACCGGCCCAAGATC
AACGAGGCGGACCTGGAGGGTAAATCGCCGGAAGAGGTCGAGATGCTGAA
GACAATGGGATTCTGCACGTTCGACACCACCAAGAACAGGAAGGTCGAGG
GCAACGATGTCGGAGAAGTGCATGTAATCCTCAAGCGAAAGTACCGCCAG
TACATGAATCGCAAGGGTGGCTTCAACCGGCCGCTCGATTTCGTGGCATA
GAAGCTTTCTAGACC

BS04263.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG18426-PA 585 ytr-RA 1..585 17..601 2925 100 Plus
CG10186-PA 5031 CG10186-RA 4951..4980 278..307 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
ytr-RB 2069 CG18426-RB 188..773 16..601 2930 100 Plus
ytr-RA 2076 CG18426-RA 195..780 16..601 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23848457..23848801 601..257 1725 100 Minus
2R 25286936 2R 23850571..23850813 258..16 1215 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:50:03 has no hits.

BS04263.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:08 Download gff for BS04263.5prime
Subject Subject Range Query Range Percent Splice Strand
ytr-PA 1..585 17..601 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:13 Download gff for BS04263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18426-PA 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:54:38 Download gff for BS04263.5prime
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 192..790 10..612 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:09:16 Download gff for BS04263.5prime
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 192..790 10..612 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:09:16 Download gff for BS04263.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23848447..23848799 259..612 98 <- Minus
2R 23850571..23850816 10..258 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:54:38 Download gff for BS04263.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19735970..19736322 259..612 98 <- Minus
arm_2R 19738094..19738339 10..258 98   Minus

BS04263.3prime Sequence

615 bp (614 high quality bases) assembled on 2005-12-01

> BS04263.3prime
ATGGTCTAGAAAGCTTCTATGCCACGAAATCGAGCGGCCGGTTGAAGCCA
CCCTTGCGATTCATGTACTGGCGGTACTTTCGCTTGAGGATTACATGCAC
TTCTCCGACATCGTTGCCCTCGACCTTCCTGTTCTTGGTGGTGTCGAACG
TGCAGAATCCCATTGTCTTCAGCATCTCGACCTCTTCCGGCGATTTACCC
TCCAGGTCCGCCTCGTTGATCTTGGGCCGGTCGGCAGCTGTGGCCGCCGC
ATTGTTCCTCGTCGTCCTTCGCGACGTCGATGGTCCGGAGCTGCTGTTGC
CGCCGCTGCTTCCGCCGCCGCCTCCTCCTCCTCCTCCTCCGGCGACCCTC
GACCGCGATCTAGATCGCCGACTCCGCGCACGGTCGCGCTCCCGTTCCCG
CTCCCGATCTCGGCTGCGACTGCGGTCGCGATCCCGTTCCCGGTCGCGGC
GACCGGCGCCTCCAGATCCGGATCCTCCGGCTGGCGCTACTCCGATGGCC
TCCCGCTCCCGGGAACGGCGCTCCCTGCGCTTCTTCCGCTCGGATCGCTC
CTTCTCGCGTCTCCTGTGCGCCGGCGAGGCGGGACTTCGGCTGCGGCCCA
TGTCGACTGATAACT

BS04263.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG18426-PA 585 ytr-RA 1..585 601..17 2925 100 Minus
CG10186-PA 5031 CG10186-RA 4951..4980 340..311 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
ytr-RB 2069 CG18426-RB 188..773 602..17 2930 100 Minus
ytr-RA 2076 CG18426-RA 195..780 602..17 2930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23848457..23848801 17..361 1725 100 Plus
2R 25286936 2R 23850571..23850813 360..602 1215 100 Plus
Blast to na_te.dros performed on 2015-02-09 03:05:57 has no hits.

BS04263.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:07 Download gff for BS04263.3prime
Subject Subject Range Query Range Percent Splice Strand
ytr-PA 1..585 17..601 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:12 Download gff for BS04263.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18426-PA 1..585 17..601 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:33 Download gff for BS04263.3prime
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 192..790 6..608 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:59 Download gff for BS04263.3prime
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 192..790 6..608 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:59 Download gff for BS04263.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23848447..23848799 6..359 98 <- Plus
2R 23850571..23850816 360..608 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:33 Download gff for BS04263.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19735970..19736322 6..359 98 <- Plus
arm_2R 19738094..19738339 360..608 98   Plus

BS04263.complete Sequence

617 bp (617 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634903

> BS04263.complete
GAAGTTATCAGTCGACATGGGCCGCAGCCGAAGTCCCGCCTCGCCGGCGC
ACAGGAGACGCGAGAAGGAGCGATCCGAGCGGAAGAAGCGCAGGGAGCGC
CGTTCCCGGGAGCGGGAGGCCATCGGAGTAGCGCCAGCCGGAGGATCCGG
ATCTGGAGGCGCCGGTCGCCGCGACCGGGAACGGGATCGCGACCGCAGTC
GCAGCCGAGATCGGGAGCGGGAACGGGAGCGCGACCGTGCGCGGAGTCGG
CGATCTAGATCGCGGTCGAGGGTCGCCGGAGGAGGAGGAGGAGGAGGCGG
CGGCGGAAGCAGCGGCGGCAACAGCAGCTCCGGACCATCGACGTCGCGAA
GGACGACGAGGAACAATGCGGCGGCCACAGCTGCCGACCGGCCCAAGATC
AACGAGGCGGACCTGGAGGGTAAATCGCCGGAAGAGGTCGAGATGCTGAA
GACAATGGGATTCTGCACGTTCGACACCACCAAGAACAGGAAGGTCGAGG
GCAACGATGTCGGAGAAGTGCATGTAATCCTCAAGCGAAAGTACCGCCAG
TACATGAATCGCAAGGGTGGCTTCAACCGGCCGCTCGATTTCGTGGCATA
GAAGCTTTCTAGACCAT

BS04263.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
ytr-RB 585 CG18426-PB 1..585 17..601 2925 100 Plus
ytr-RA 585 CG18426-PA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
ytr-RB 2069 CG18426-RB 188..773 16..601 2930 100 Plus
ytr-RA 2076 CG18426-RA 195..780 16..601 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23848457..23848801 601..257 1725 100 Minus
2R 25286936 2R 23850571..23850813 258..16 1215 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:51:47 has no hits.

BS04263.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:42 Download gff for BS04263.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:01 Download gff for BS04263.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 215..813 10..612 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:50 Download gff for BS04263.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 196..780 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:42 Download gff for BS04263.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 215..813 10..612 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:26 Download gff for BS04263.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 196..780 17..601 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:26 Download gff for BS04263.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23848457..23848799 259..601 100 <- Minus
2R 23850571..23850812 17..258 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:50 Download gff for BS04263.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19735980..19736322 259..601 100 <- Minus
arm_2R 19738094..19738335 17..258 100   Minus

BS04263.pep Sequence

Translation from 16 to 600

> BS04263.pep
MGRSRSPASPAHRRREKERSERKKRRERRSREREAIGVAPAGGSGSGGAG
RRDRERDRDRSRSRDRERERERDRARSRRSRSRSRVAGGGGGGGGGGSSG
GNSSSGPSTSRRTTRNNAAATAADRPKINEADLEGKSPEEVEMLKTMGFC
TFDTTKNRKVEGNDVGEVHVILKRKYRQYMNRKGGFNRPLDFVA*

BS04263.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
ytr-PB 194 CG18426-PB 1..194 1..194 996 100 Plus
ytr-PA 194 CG18426-PA 1..194 1..194 996 100 Plus
CG18809-PD 362 CG18809-PD 32..208 5..184 161 31 Plus
CG18809-PC 362 CG18809-PC 32..208 5..184 161 31 Plus
CG18809-PB 362 CG18809-PB 32..208 5..184 161 31 Plus