Clone Sequence Records
BS04263.5prime Sequence
615 bp (614 high quality bases) assembled on 2005-11-29
> BS04263.5prime
GAAGTTATCAGTCGACATGGGCCGCAGCCGAAGTCCCGCCTCGCCGGCGC
ACAGGAGACGCGAGAAGGAGCGATCCGAGCGGAAGAAGCGCAGGGAGCGC
CGTTCCCGGGAGCGGGAGGCCATCGGAGTAGCGCCAGCCGGAGGATCCGG
ATCTGGAGGCGCCGGTCGCCGCGACCGGGAACGGGATCGCGACCGCAGTC
GCAGCCGAGATCGGGAGCGGGAACGGGAGCGCGACCGTGCGCGGAGTCGG
CGATCTAGATCGCGGTCGAGGGTCGCCGGAGGAGGAGGAGGAGGAGGCGG
CGGCGGAAGCAGCGGCGGCAACAGCAGCTCCGGACCATCGACGTCGCGAA
GGACGACGAGGAACAATGCGGCGGCCACAGCTGCCGACCGGCCCAAGATC
AACGAGGCGGACCTGGAGGGTAAATCGCCGGAAGAGGTCGAGATGCTGAA
GACAATGGGATTCTGCACGTTCGACACCACCAAGAACAGGAAGGTCGAGG
GCAACGATGTCGGAGAAGTGCATGTAATCCTCAAGCGAAAGTACCGCCAG
TACATGAATCGCAAGGGTGGCTTCAACCGGCCGCTCGATTTCGTGGCATA
GAAGCTTTCTAGACC
BS04263.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18426-PA | 585 | ytr-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
CG10186-PA | 5031 | CG10186-RA | 4951..4980 | 278..307 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ytr-RB | 2069 | CG18426-RB | 188..773 | 16..601 | 2930 | 100 | Plus |
ytr-RA | 2076 | CG18426-RA | 195..780 | 16..601 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23848457..23848801 | 601..257 | 1725 | 100 | Minus |
2R | 25286936 | 2R | 23850571..23850813 | 258..16 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:50:03 has no hits.
BS04263.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:08 Download gff for
BS04263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ytr-PA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:13 Download gff for
BS04263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18426-PA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:54:38 Download gff for
BS04263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ytr-RA | 192..790 | 10..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:09:16 Download gff for
BS04263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ytr-RA | 192..790 | 10..612 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:09:16 Download gff for
BS04263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23848447..23848799 | 259..612 | 98 | <- | Minus |
2R | 23850571..23850816 | 10..258 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:54:38 Download gff for
BS04263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19735970..19736322 | 259..612 | 98 | <- | Minus |
arm_2R | 19738094..19738339 | 10..258 | 98 | | Minus |
BS04263.3prime Sequence
615 bp (614 high quality bases) assembled on 2005-12-01
> BS04263.3prime
ATGGTCTAGAAAGCTTCTATGCCACGAAATCGAGCGGCCGGTTGAAGCCA
CCCTTGCGATTCATGTACTGGCGGTACTTTCGCTTGAGGATTACATGCAC
TTCTCCGACATCGTTGCCCTCGACCTTCCTGTTCTTGGTGGTGTCGAACG
TGCAGAATCCCATTGTCTTCAGCATCTCGACCTCTTCCGGCGATTTACCC
TCCAGGTCCGCCTCGTTGATCTTGGGCCGGTCGGCAGCTGTGGCCGCCGC
ATTGTTCCTCGTCGTCCTTCGCGACGTCGATGGTCCGGAGCTGCTGTTGC
CGCCGCTGCTTCCGCCGCCGCCTCCTCCTCCTCCTCCTCCGGCGACCCTC
GACCGCGATCTAGATCGCCGACTCCGCGCACGGTCGCGCTCCCGTTCCCG
CTCCCGATCTCGGCTGCGACTGCGGTCGCGATCCCGTTCCCGGTCGCGGC
GACCGGCGCCTCCAGATCCGGATCCTCCGGCTGGCGCTACTCCGATGGCC
TCCCGCTCCCGGGAACGGCGCTCCCTGCGCTTCTTCCGCTCGGATCGCTC
CTTCTCGCGTCTCCTGTGCGCCGGCGAGGCGGGACTTCGGCTGCGGCCCA
TGTCGACTGATAACT
BS04263.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18426-PA | 585 | ytr-RA | 1..585 | 601..17 | 2925 | 100 | Minus |
CG10186-PA | 5031 | CG10186-RA | 4951..4980 | 340..311 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ytr-RB | 2069 | CG18426-RB | 188..773 | 602..17 | 2930 | 100 | Minus |
ytr-RA | 2076 | CG18426-RA | 195..780 | 602..17 | 2930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23848457..23848801 | 17..361 | 1725 | 100 | Plus |
2R | 25286936 | 2R | 23850571..23850813 | 360..602 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:05:57 has no hits.
BS04263.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:07 Download gff for
BS04263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ytr-PA | 1..585 | 17..601 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:12 Download gff for
BS04263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18426-PA | 1..585 | 17..601 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:33 Download gff for
BS04263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ytr-RA | 192..790 | 6..608 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:59 Download gff for
BS04263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ytr-RA | 192..790 | 6..608 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:59 Download gff for
BS04263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23848447..23848799 | 6..359 | 98 | <- | Plus |
2R | 23850571..23850816 | 360..608 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:33 Download gff for
BS04263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19735970..19736322 | 6..359 | 98 | <- | Plus |
arm_2R | 19738094..19738339 | 360..608 | 98 | | Plus |
BS04263.complete Sequence
617 bp (617 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634903
> BS04263.complete
GAAGTTATCAGTCGACATGGGCCGCAGCCGAAGTCCCGCCTCGCCGGCGC
ACAGGAGACGCGAGAAGGAGCGATCCGAGCGGAAGAAGCGCAGGGAGCGC
CGTTCCCGGGAGCGGGAGGCCATCGGAGTAGCGCCAGCCGGAGGATCCGG
ATCTGGAGGCGCCGGTCGCCGCGACCGGGAACGGGATCGCGACCGCAGTC
GCAGCCGAGATCGGGAGCGGGAACGGGAGCGCGACCGTGCGCGGAGTCGG
CGATCTAGATCGCGGTCGAGGGTCGCCGGAGGAGGAGGAGGAGGAGGCGG
CGGCGGAAGCAGCGGCGGCAACAGCAGCTCCGGACCATCGACGTCGCGAA
GGACGACGAGGAACAATGCGGCGGCCACAGCTGCCGACCGGCCCAAGATC
AACGAGGCGGACCTGGAGGGTAAATCGCCGGAAGAGGTCGAGATGCTGAA
GACAATGGGATTCTGCACGTTCGACACCACCAAGAACAGGAAGGTCGAGG
GCAACGATGTCGGAGAAGTGCATGTAATCCTCAAGCGAAAGTACCGCCAG
TACATGAATCGCAAGGGTGGCTTCAACCGGCCGCTCGATTTCGTGGCATA
GAAGCTTTCTAGACCAT
BS04263.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ytr-RB | 585 | CG18426-PB | 1..585 | 17..601 | 2925 | 100 | Plus |
ytr-RA | 585 | CG18426-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ytr-RB | 2069 | CG18426-RB | 188..773 | 16..601 | 2930 | 100 | Plus |
ytr-RA | 2076 | CG18426-RA | 195..780 | 16..601 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23848457..23848801 | 601..257 | 1725 | 100 | Minus |
2R | 25286936 | 2R | 23850571..23850813 | 258..16 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:51:47 has no hits.
BS04263.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:42 Download gff for
BS04263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ytr-RA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:01 Download gff for
BS04263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ytr-RA | 215..813 | 10..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:50 Download gff for
BS04263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ytr-RA | 196..780 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:42 Download gff for
BS04263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ytr-RA | 215..813 | 10..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:26 Download gff for
BS04263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ytr-RA | 196..780 | 17..601 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:26 Download gff for
BS04263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23848457..23848799 | 259..601 | 100 | <- | Minus |
2R | 23850571..23850812 | 17..258 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:50 Download gff for
BS04263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19735980..19736322 | 259..601 | 100 | <- | Minus |
arm_2R | 19738094..19738335 | 17..258 | 100 | | Minus |
BS04263.pep Sequence
Translation from 16 to 600
> BS04263.pep
MGRSRSPASPAHRRREKERSERKKRRERRSREREAIGVAPAGGSGSGGAG
RRDRERDRDRSRSRDRERERERDRARSRRSRSRSRVAGGGGGGGGGGSSG
GNSSSGPSTSRRTTRNNAAATAADRPKINEADLEGKSPEEVEMLKTMGFC
TFDTTKNRKVEGNDVGEVHVILKRKYRQYMNRKGGFNRPLDFVA*
BS04263.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ytr-PB | 194 | CG18426-PB | 1..194 | 1..194 | 996 | 100 | Plus |
ytr-PA | 194 | CG18426-PA | 1..194 | 1..194 | 996 | 100 | Plus |
CG18809-PD | 362 | CG18809-PD | 32..208 | 5..184 | 161 | 31 | Plus |
CG18809-PC | 362 | CG18809-PC | 32..208 | 5..184 | 161 | 31 | Plus |
CG18809-PB | 362 | CG18809-PB | 32..208 | 5..184 | 161 | 31 | Plus |