Clone Sequence Records
BS04264.complete Sequence
1946 bp assembled on 2009-12-07
GenBank Submission: KX799050
> BS04264.complete
GAAGTTATCAGTCGACATGTTGTTCCGCTCAGCGAAAAGCAAGTTCGACG
CCGGCGACGTGATGCGTCGAATGAAACGCCTGGCGGAGGGCACGATCTCC
TCGTACCGCCGCTTGTTCCTCCTGCTCCTCTGCGTCTGTGTGGTCTTCTA
TATGATTCCGCCGATCTTTCGCTATATCTTCCTTAGTGCTCCAGAACAGA
AGGATCCCCACAGTATGTGCATGGATGACCGGCTGACGCCCTTCATCCTC
CAGAACTTTGAATTCGATGCCAATATCCGTCACGTGTCACCAGCGAAAAT
GCCTGGTGAACGCGATTTCACGCCCTACGTCGGCAACGGCTACCTGGGCC
TGGAGATCGCACACGACGCTTTCCTGAACATCAAGAATGGCAGGGCCATG
CAGCTGCCTATTCCTTTCCAGCCGGTGGTCTCCGTTTCGGGAGGATCCGC
ATCTGGCGGCGAAAAGGAAGCCACTGTCGTCGAATATCTGACGGGAATGG
TGCATCGGTTCCAATGCTTTGCCGGTTACTTTGTTTCGTACACCTACTAC
GCCCATCGCACTCAGCCGAATATCTTCATGCAAGAGCTGCAGATCACAAA
CACCAGGAACCTCTTGGAGGACATAGAACTGATCATGCCACGCGTCAATC
TCCAGAAGCTCACCAGGCGAACTGTTCCCCTAAGTGAACCCGTCTCCGTG
GGAGTGTTCACCTACACAGAGTTGGAGGTGCTCTCGGGCACAGTCCAGCT
TCAGGCAGAAAATCCCAGTAAATCCATTGTTATAAGCATAGTGAAGCCGC
AGATGGACTCCAAGCTGCAGCTGAGAAAGCGCGGCACAGTGCGAATTGTG
TATCCCACAGCAGTGCATTACTCAAAACCAGTGGCGGAGGAAAAAATCGG
TGGTATAAGCGAGACCATCGAGCAGCAGGCCACTCAGGCGATGGCGAAGC
TGCTCCAAAAGCTTGGCTCCAAGCCCTCAAACCCAGGATCCTTGAACAGC
GTAAACATCTATCGCCAGGAGCACATTGACGTTTGGACTGATTTGTGGGC
CACTGGATTTACGATAAGCACATCCAAGGCGGAGAATAGCTTGAACGGCG
ACCGCATCAATGCCACGATGTATGCAGTTCTCTCCCAGGTGCGCAGCTTC
GAGTTCGAGGAGGCGGGTGGCTCCAAAAAGGAGGATATAGCAAAGGCGCT
AACGTACGCCGAAGGCTGCTACGATTCGTATCACACTCTGCAGGCGGAGA
ATCTTTGGCGCGAGATGTCTAATCTTCAGCAGCTTAACTCCCTGGTTACG
TCGTGGATGCTAACGTTGGAGAAACAGGGCTGCCACAATCTTATTCGAGC
GGGAGCTTCGGGAGTCATCCAAGCCATGGTCCTGAGCTTTGGCAGCTTTC
GTTTTAGCAATCAGCATCTGGAGTGCAACATCCATCCGAAGTTTCTGCAT
AGGGACTTCCACTTCAGGCGCCTCAATTACGGCAACAAAACCCATGTCAA
CGTCACCATCATTGTGGATGATGACAACAAGGCGGTGATCAACATCGCGC
TGGATCGTTCAGACAGGAGCTACTACGCTTGCGATGGCGGCTGCCTGGAT
GAGCCCGTGCTGCTCACGCAAAACCGACGACAATTCCCAGTCAAACTGAC
TGAACCGCTAACAGCAATATTATACATAACCGAGGACAAGCAACACATGG
AAGAGCTGCACCATGCCATCCACGTGAAGGAAGTGGTCGAGGCTCCCGCC
CATGAGCAGCATTTGATCGCACTGCATCGGCATGGCCACCAACTGGGTGG
ATTGCCCACGCTCTTCTGGGTTTCCGTGTGCGCAATAATCATAGTATTCC
ACATATTCCTGTGCAAGCTCATTATCAAGGAGTACTGCGAGCCGAGCGAT
AAGTTAAGATATCGTTATAACAAACCGTGAAAGCTTTCTAGACCAT
BS04264.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-RA | 1914 | CG7289-PA | 1..1914 | 17..1930 | 9570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-RA | 2130 | CG7289-RA | 96..2009 | 17..1930 | 9570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1982546..1983961 | 203..1618 | 7080 | 100 | Plus |
| 2L | 23513712 | 2L | 1984205..1984393 | 1742..1930 | 945 | 100 | Plus |
| 2L | 23513712 | 2L | 1982312..1982498 | 17..203 | 935 | 100 | Plus |
| 2L | 23513712 | 2L | 1984019..1984143 | 1618..1742 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:12:49 has no hits.
BS04264.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:59 Download gff for
BS04264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 84..1991 | 22..1929 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:49 Download gff for
BS04264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 101..2008 | 22..1929 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:40 Download gff for
BS04264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 84..1991 | 22..1929 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:26 Download gff for
BS04264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 101..2008 | 22..1929 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:26 Download gff for
BS04264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1982317..1982498 | 22..203 | 100 | -> | Plus |
| 2L | 1982547..1983960 | 204..1617 | 100 | -> | Plus |
| 2L | 1984019..1984143 | 1618..1742 | 100 | -> | Plus |
| 2L | 1984206..1984392 | 1743..1929 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:49 Download gff for
BS04264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1982317..1982498 | 22..203 | 100 | -> | Plus |
| arm_2L | 1982547..1983960 | 204..1617 | 100 | -> | Plus |
| arm_2L | 1984019..1984143 | 1618..1742 | 100 | -> | Plus |
| arm_2L | 1984206..1984392 | 1743..1929 | 100 | | Plus |
BS04264.3prime Sequence
884 bp (812 high quality bases) assembled on 2005-12-01
> BS04264.3prime
ATGGTCTAGAAAGCTTTCACGGTTTGTTATAACGATATCTTAACTTATCG
CTCGGCTCGCAGTACTCCTTGATAATGAGCTTGCACAGGAATATGTGGAA
TACTATGATTATTGCGCACACGGAAACCCAGAAGAGCGTGGGCAATCCAC
CCAGTTGGTGGCCATGCCGATGCAGTGCGATCAAATGCTGCTCATGGGCG
GGAGCCTCGACCACTTCCTTCACGTGGATGGCATGGTGCAGCTCTTCCAT
GTGTTGCTTGTCCTCGGTTATGTATAATATTGCTGTTAGCGGTTCAGTCA
GTTTGACTGGGAATTGTCGTCGGTTTTGCGTGAGCAGCACGGGCTCATCC
AGGCAGCCGCCATCGCAAGCGTAGTAGCTCCTGTCTGAACGATCCAGCGC
GATGTTGATCACCGCCTTGTTGTCATCATCCACAATGATGGTGACGTTGA
CATGGGTTTTGTTGCCGTAATTGAGGCGCCTGAAGTGGAAGTCCCTATGC
AGAAACTTCGGATGGATGTTGCACTCCAGATGCTGATTGCTAAAACGAAA
GCTGCCAAAGCTCAGGACCATGGCTTGGATGACTCCCGAAGCTCCCGCTC
GAATAAGATTGTGGCAGCCCTGTTTCTCCAACGTTAGCATCCACGACGTA
ACCAGGGAGTTAAGCTGCTGAAGATTAGACATCTCGCGCCAAAGATTCTC
CGCCTGCAGAGTGTGATACGAATCGTAGCAGCCTTCGGCGTACGTTAGCG
CCTTTGCTATATCCTCCTTTTTGGAGCCACCCGCCTCCTCGAACTCGAAG
CTGCGCACCTGGGAGAGAACTGCATACATCGTGGCATTGATGCGGTCGCC
GTTCAAGCTATTCTCCGCCTTGGATGTGCTTATC
BS04264.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-PA | 1914 | CG7289-RA | 1047..1914 | 884..17 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:51:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-RA | 2130 | CG7289-RA | 1142..2009 | 884..17 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1983406..1983961 | 884..329 | 2780 | 100 | Minus |
| 2L | 23513712 | 2L | 1984205..1984393 | 205..17 | 945 | 100 | Minus |
| 2L | 23513712 | 2L | 1984019..1984143 | 329..205 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:50:58 has no hits.
BS04264.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:09 Download gff for
BS04264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-PA | 1047..1914 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:14 Download gff for
BS04264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-PA | 1047..1914 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:58:22 Download gff for
BS04264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 1142..2013 | 12..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:32 Download gff for
BS04264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 1142..2013 | 12..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:32 Download gff for
BS04264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1983406..1983960 | 330..884 | 100 | -> | Minus |
| 2L | 1984019..1984143 | 205..329 | 100 | -> | Minus |
| 2L | 1984206..1984397 | 12..204 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:58:22 Download gff for
BS04264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1983406..1983960 | 330..884 | 100 | -> | Minus |
| arm_2L | 1984019..1984143 | 205..329 | 100 | -> | Minus |
| arm_2L | 1984206..1984397 | 12..204 | 98 | | Minus |
BS04264.5prime Sequence
905 bp (821 high quality bases) assembled on 2005-12-01
> BS04264.5prime
GAAGTTATCAGTCGACATGTTGTTCCGCTCAGCGAAAAGCAAGTTCGACG
CCGGCGACGTGATGCGTCGAATGAAACGCCTGGCGGAGGGCACGATCTCC
TCGTACCGCCGCTTGTTCCTCCTGCTCCTCTGCGTCTGTGTGGTCTTCTA
TATGATTCCGCCGATCTTTCGCTATATCTTCCTTAGTGCTCCAGAACAGA
AGGATCCCCACAGTATGTGCATGGATGACCGGCTGACGCCCTTCATCCTC
CAGAACTTTGAATTCGATGCCAATATCCGTCACGTGTCACCAGCGAAAAT
GCCTGGTGAACGCGATTTCACGCCCTACGTCGGCAACGGCTACCTGGGCC
TGGAGATCGCACACGACGCTTTCCTGAACATCAAGAATGGCAGGGCCATG
CAGCTGCCTATTCCTTTCCAGCCGGTGGTCTCCGTTTCGGGAGGATCCGC
ATCTGGCGGCGAAAAGGAAGCCACTGTCGTCGAATATCTGACGGGAATGG
TGCATCGGTTCCAATGCTTTGCCGGTTACTTTGTTTCGTACACCTACTAC
GCCCATCGCACTCAGCCGAATATCTTCATGCAAGAGCTGCAGATCACAAA
CACCAGGAACCTCTTGGAGGACATAGAACTGATCATGCCACGCGTCAATC
TCCAGAAGCTCACCAGGCGAACTGTTCCCCTAAGTGAACCCGTCTCCGTG
GGAGTGTTCACCTACACAGAGTTGGAGGTGCTCTCGGGCACAGTCCAGCT
TCAGGCAGAAAATCCCAGTAAATCCATTGTTATAAGCATAGTGAAGCCGC
AGATGGACTCCAAGCTGCAGCTGAGAAAGCGCGGCACAGTGCGAATTGTG
TATCCCACAGCAGTGCATTACTCAAAACAGTGGCGGAAGAAAAAATCGGT
GGTAT
BS04264.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-PA | 1914 | CG7289-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-RA | 2130 | CG7289-RA | 96..985 | 17..905 | 4410 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1982546..1983249 | 203..905 | 3455 | 99.7 | Plus |
| 2L | 23513712 | 2L | 1982312..1982498 | 17..203 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:34:01 has no hits.
BS04264.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:10 Download gff for
BS04264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-PA | 1..890 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:15 Download gff for
BS04264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-PA | 1..890 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:02:05 Download gff for
BS04264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 96..985 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:23 Download gff for
BS04264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 96..985 | 17..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:23 Download gff for
BS04264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1982312..1982498 | 17..203 | 100 | -> | Plus |
| 2L | 1982547..1983249 | 204..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:02:05 Download gff for
BS04264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1982312..1982498 | 17..203 | 100 | -> | Plus |
| arm_2L | 1982547..1983249 | 204..905 | 99 | | Plus |
BS04264.pep Sequence
Translation from 16 to 1929
> BS04264.pep
MLFRSAKSKFDAGDVMRRMKRLAEGTISSYRRLFLLLLCVCVVFYMIPPI
FRYIFLSAPEQKDPHSMCMDDRLTPFILQNFEFDANIRHVSPAKMPGERD
FTPYVGNGYLGLEIAHDAFLNIKNGRAMQLPIPFQPVVSVSGGSASGGEK
EATVVEYLTGMVHRFQCFAGYFVSYTYYAHRTQPNIFMQELQITNTRNLL
EDIELIMPRVNLQKLTRRTVPLSEPVSVGVFTYTELEVLSGTVQLQAENP
SKSIVISIVKPQMDSKLQLRKRGTVRIVYPTAVHYSKPVAEEKIGGISET
IEQQATQAMAKLLQKLGSKPSNPGSLNSVNIYRQEHIDVWTDLWATGFTI
STSKAENSLNGDRINATMYAVLSQVRSFEFEEAGGSKKEDIAKALTYAEG
CYDSYHTLQAENLWREMSNLQQLNSLVTSWMLTLEKQGCHNLIRAGASGV
IQAMVLSFGSFRFSNQHLECNIHPKFLHRDFHFRRLNYGNKTHVNVTIIV
DDDNKAVINIALDRSDRSYYACDGGCLDEPVLLTQNRRQFPVKLTEPLTA
ILYITEDKQHMEELHHAIHVKEVVEAPAHEQHLIALHRHGHQLGGLPTLF
WVSVCAIIIVFHIFLCKLIIKEYCEPSDKLRYRYNKP*
BS04264.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-PA | 637 | CG7289-PA | 1..637 | 1..637 | 3329 | 100 | Plus |
