Clone BS04265 Report

Search the DGRC for BS04265

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG3077-RA
Protein status:BS04265.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04265.3prime Sequence

871 bp (838 high quality bases) assembled on 2005-12-01

> BS04265.3prime
ATGGTCTAGAAAGCTTTCAAATTGTTTCAGTGCGAGGATCGATCTTGTGT
ATAGCCTGCATGAGGCTCTCGGTGTTCGCCGTGTTGATGCCCTGCTTGGA
CATGTCAGTCAGTCGGTCGGTGATTGGCTTTTGGTCCTGGCCGCGCTGCC
ACCACAGATGGGCGCAGGTGTGAAGCAGGGGAATGTAGAGCGGCAGCAGA
TCAATATCGCACAACGTCTCGAAGCGACTCAGTGCCAGCAGGGCCCACCT
CTCGGCCGCGTGATGAGGCACTGGGGATGAGGTGCAGGCAGCCACTAGAC
GGCAGAGTATCAAAAGCACCGGCCTCGATCGATTCATGTATATCTTGTTC
AGCAAGCGGAAACAGTTCTCCAGAATAGGTATGGCCATTTCGTTACGCCG
CTCATCCAGAAACTGGCACGCCCTGGTCAGTTCGTCGTGCTGCAGGAAGC
GCAGGAAGTACTCCGAGTCCCGGAGCATCGCCTGGCTTGCCACATACGTG
AGGAATGCCTCGAAGGCTGCACTCCGTTCGCCGATCAGCTCGGACTTGAA
GTTACCCATCAGGACCTTGGCTGGGAAGTACTTGTTGGCCATCTCCGCCG
GATGCTGCCGCTTAAGGCCCAGATAAAGCTCCCGAAAGTCGGTGTATCGG
CGCTCAATCTTTGCCGGCTGAGTGTCCTCCGTGGCTCCATCCTGCTTAAC
AGTGAGCTCATAGACCACGAACCGCTTGATCTTCACATCCTCGCCATCGG
GCGGCATTATGTGGGCCAGCAAGATGTCAAAGCGGAGCACGGTGCTCCCA
TCCGTGGTCGGCTTATACTCAGCACTTGTGGCTCGCTCCCAGACACCTTT
TTGGAGCGCCTTATCGGATTC

BS04265.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-PA 981 CG3077-RA 127..981 871..17 4275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-RB 2025 CG3077-RB 281..1136 871..16 4280 100 Minus
CG3077-RA 1372 CG3077-RA 290..1145 871..16 4280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2764502..2765200 150..848 3495 100 Plus
2L 23513712 2L 2764305..2764442 16..153 690 100 Plus
Blast to na_te.dros performed 2015-02-11 10:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 1158..1239 761..679 115 63.1 Minus

BS04265.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:11 Download gff for BS04265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-PA 127..981 17..871 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:16 Download gff for BS04265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-PA 127..981 17..871 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:03 Download gff for BS04265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 290..1145 16..871 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:52 Download gff for BS04265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 290..1145 16..871 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:52 Download gff for BS04265.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2764305..2764441 16..152 100 <- Plus
2L 2764505..2765198 153..846 100 <- Plus
2L 2765284..2765308 847..871 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:03 Download gff for BS04265.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2764305..2764441 16..152 100 <- Plus
arm_2L 2764505..2765198 153..846 100 <- Plus
arm_2L 2765284..2765308 847..871 100   Plus

BS04265.5prime Sequence

915 bp (760 high quality bases) assembled on 2005-11-29

> BS04265.5prime
GAAGTTATCAGTCGACATGCCCATTCACGCCGTGATGGCCAAGCGCCTGC
ACCACCAGCCTACCTTCGATGGGGATCCACCCGGTCCGGATGAGCTGGAC
AGTCCAGCCATCGAGGCGGCGGCCCTCGACATTCCCCCTCCCGAATCCGA
TAAGGCGCTCCAAAAAGGTGTCTGGGAGCGAGCCACAAGTGCTGAGTATA
AGCCGACCACGGATGGGAGCACCGTGCTCCGCTTTGACATCTTGCTGGCC
CACATAATGCCGCCCGATGGCGAGGATGTGAAGATCAAGCGGTTCGTGGT
CTATGAGCTCACTGTTAAGCAGGATGGAGCCACGGAGGACACTCAGCCGG
CAAAGATTGAGCGCCGATACACCGACTTTCGGGAGCTTTATCTGGGCCTT
AAGCGGCAGCATCCGGCGGAGATGGCCAACAAGTACTTCCCAGCCAAGGT
CCTGATGGGTAACTTCAAGTCCGAGCTGATCGGCGAACGGAGTGCAGCCT
TCGAGGCATTCCTCACGTATGTGGCAAGCCAGGCGATGCTCCGGGACTCG
GAGTACTTCCTGCGCTTCCTGCAGCACGACGAACTGACCAGGGCGTGCCA
GTTTCTGGATGAGCGGCGTAACGAAATGGCCATACCTATTCTGGAGAACT
GTTTCCGCTTGCTGAACAAGATATACATGAATCGATCGAGGCCGGTGCTT
TTGATACTCTGCCGTCTAGTGGCTGCCTGCACCTCATCCCCAGTGCCTCA
TCACGCGGCCGAGAGGTGGGCCCTGCTGGCACTGAGTCGCTTCGAGACGT
TGTGCGATATTGATCTGCTGCCGCTCTACATTCCCCTGCTTCACACCTGC
GCCCATCTGTGGTGGCAGCGCGGCCAGGACCAAAAGCCAATCACCGACCG
ACTGACTGACATGTC

BS04265.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-PA 981 CG3077-RA 1..899 17..915 4495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-RA 1372 CG3077-RA 164..1062 17..915 4495 100 Plus
CG3077-RB 2025 CG3077-RB 162..1053 24..915 4460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2764502..2765200 864..166 3495 100 Minus
2L 23513712 2L 2765282..2765427 169..24 730 100 Minus
2L 23513712 2L 2764388..2764442 915..861 275 100 Minus
Blast to na_te.dros performed 2015-02-10 03:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 1158..1239 253..335 115 63.1 Plus

BS04265.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:13 Download gff for BS04265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-PA 1..899 17..915 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:19 Download gff for BS04265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-PA 1..899 17..915 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:15 Download gff for BS04265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 161..1062 13..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:17:11 Download gff for BS04265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 161..1062 13..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:17:11 Download gff for BS04265.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2764388..2764441 862..915 100 <- Minus
2L 2764505..2765198 168..861 100 <- Minus
2L 2765284..2765432 20..167 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:15 Download gff for BS04265.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2764388..2764441 862..915 100 <- Minus
arm_2L 2764505..2765198 168..861 100 <- Minus
arm_2L 2765284..2765432 20..167 99   Minus

BS04265.complete Sequence

1013 bp (1013 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634904

> BS04265.complete
GAAGTTATCAGTCGACATGCCCATTCACGCCGTGATGGCCAAGCGCCTGC
ACCACCAGCCTACCTTCGATGGGGATCCACCCGGTCCGGATGAGCTGGAC
AGTCCAGCCATCGAGGCGGCGGCCCTCGACATTCCCCCTCCCGAATCCGA
TAAGGCGCTCCAAAAAGGTGTCTGGGAGCGAGCCACAAGTGCTGAGTATA
AGCCGACCACGGATGGGAGCACCGTGCTCCGCTTTGACATCTTGCTGGCC
CACATAATGCCGCCCGATGGCGAGGATGTGAAGATCAAGCGGTTCGTGGT
CTATGAGCTCACTGTTAAGCAGGATGGAGCCACGGAGGACACTCAGCCGG
CAAAGATTGAGCGCCGATACACCGACTTTCGGGAGCTTTATCTGGGCCTT
AAGCGGCAGCATCCGGCGGAGATGGCCAACAAGTACTTCCCAGCCAAGGT
CCTGATGGGTAACTTCAAGTCCGAGCTGATCGGCGAACGGAGTGCAGCCT
TCGAGGCATTCCTCACGTATGTGGCAAGCCAGGCGATGCTCCGGGACTCG
GAGTACTTCCTGCGCTTCCTGCAGCACGACGAACTGACCAGGGCGTGCCA
GTTTCTGGATGAGCGGCGTAACGAAATGGCCATACCTATTCTGGAGAACT
GTTTCCGCTTGCTGAACAAGATATACATGAATCGATCGAGGCCGGTGCTT
TTGATACTCTGCCGTCTAGTGGCTGCCTGCACCTCATCCCCAGTGCCTCA
TCACGCGGCCGAGAGGTGGGCCCTGCTGGCACTGAGTCGCTTCGAGACGT
TGTGCGATATTGATCTGCTGCCGCTCTACATTCCCCTGCTTCACACCTGC
GCCCATCTGTGGTGGCAGCGCGGCCAGGACCAAAAGCCAATCACCGACCG
ACTGACTGACATGTCCAAGCAGGGCATCAACACGGCGAACACCGAGAGCC
TCATGCAGGCTATACACAAGATCGATCCTCGCACTGAAACAATTTGAAAG
CTTTCTAGACCAT

BS04265.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-RA 981 CG3077-PA 1..981 17..997 4905 100 Plus
CG3077-RB 963 CG3077-PB 1..963 35..997 4815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-RA 1372 CG3077-RA 164..1145 17..998 4910 100 Plus
CG3077-RB 2025 CG3077-RB 162..1136 24..998 4875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2764502..2765200 864..166 3495 100 Minus
2L 23513712 2L 2765282..2765427 169..24 730 100 Minus
2L 23513712 2L 2764305..2764442 998..861 690 100 Minus
Blast to na_te.dros performed 2014-11-27 14:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 1158..1239 253..335 115 63.1 Plus

BS04265.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:43 Download gff for BS04265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 1..981 17..997 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:03 Download gff for BS04265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 182..1166 13..998 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:04 Download gff for BS04265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 164..1143 17..996 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:43 Download gff for BS04265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 182..1166 13..998 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:55 Download gff for BS04265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 164..1143 17..996 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:55 Download gff for BS04265.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2764307..2764441 862..996 100 <- Minus
2L 2765284..2765434 17..167 98   Minus
2L 2764505..2765198 168..861 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:04 Download gff for BS04265.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2765284..2765434 17..167 98   Minus
arm_2L 2764307..2764441 862..996 100 <- Minus
arm_2L 2764505..2765198 168..861 100 <- Minus

BS04265.pep Sequence

Translation from 16 to 996

> BS04265.pep
MPIHAVMAKRLHHQPTFDGDPPGPDELDSPAIEAAALDIPPPESDKALQK
GVWERATSAEYKPTTDGSTVLRFDILLAHIMPPDGEDVKIKRFVVYELTV
KQDGATEDTQPAKIERRYTDFRELYLGLKRQHPAEMANKYFPAKVLMGNF
KSELIGERSAAFEAFLTYVASQAMLRDSEYFLRFLQHDELTRACQFLDER
RNEMAIPILENCFRLLNKIYMNRSRPVLLILCRLVAACTSSPVPHHAAER
WALLALSRFETLCDIDLLPLYIPLLHTCAHLWWQRGQDQKPITDRLTDMS
KQGINTANTESLMQAIHKIDPRTETI*

BS04265.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-PA 326 CG3077-PA 1..326 1..326 1715 100 Plus
CG3077-PB 320 CG3077-PB 1..320 7..326 1683 100 Plus