Clone Sequence Records
BS04265.3prime Sequence
871 bp (838 high quality bases) assembled on 2005-12-01
> BS04265.3prime
ATGGTCTAGAAAGCTTTCAAATTGTTTCAGTGCGAGGATCGATCTTGTGT
ATAGCCTGCATGAGGCTCTCGGTGTTCGCCGTGTTGATGCCCTGCTTGGA
CATGTCAGTCAGTCGGTCGGTGATTGGCTTTTGGTCCTGGCCGCGCTGCC
ACCACAGATGGGCGCAGGTGTGAAGCAGGGGAATGTAGAGCGGCAGCAGA
TCAATATCGCACAACGTCTCGAAGCGACTCAGTGCCAGCAGGGCCCACCT
CTCGGCCGCGTGATGAGGCACTGGGGATGAGGTGCAGGCAGCCACTAGAC
GGCAGAGTATCAAAAGCACCGGCCTCGATCGATTCATGTATATCTTGTTC
AGCAAGCGGAAACAGTTCTCCAGAATAGGTATGGCCATTTCGTTACGCCG
CTCATCCAGAAACTGGCACGCCCTGGTCAGTTCGTCGTGCTGCAGGAAGC
GCAGGAAGTACTCCGAGTCCCGGAGCATCGCCTGGCTTGCCACATACGTG
AGGAATGCCTCGAAGGCTGCACTCCGTTCGCCGATCAGCTCGGACTTGAA
GTTACCCATCAGGACCTTGGCTGGGAAGTACTTGTTGGCCATCTCCGCCG
GATGCTGCCGCTTAAGGCCCAGATAAAGCTCCCGAAAGTCGGTGTATCGG
CGCTCAATCTTTGCCGGCTGAGTGTCCTCCGTGGCTCCATCCTGCTTAAC
AGTGAGCTCATAGACCACGAACCGCTTGATCTTCACATCCTCGCCATCGG
GCGGCATTATGTGGGCCAGCAAGATGTCAAAGCGGAGCACGGTGCTCCCA
TCCGTGGTCGGCTTATACTCAGCACTTGTGGCTCGCTCCCAGACACCTTT
TTGGAGCGCCTTATCGGATTC
BS04265.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3077-PA | 981 | CG3077-RA | 127..981 | 871..17 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3077-RB | 2025 | CG3077-RB | 281..1136 | 871..16 | 4280 | 100 | Minus |
CG3077-RA | 1372 | CG3077-RA | 290..1145 | 871..16 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2764502..2765200 | 150..848 | 3495 | 100 | Plus |
2L | 23513712 | 2L | 2764305..2764442 | 16..153 | 690 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 10:35:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1158..1239 | 761..679 | 115 | 63.1 | Minus |
BS04265.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:11 Download gff for
BS04265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-PA | 127..981 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:16 Download gff for
BS04265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-PA | 127..981 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:03 Download gff for
BS04265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 290..1145 | 16..871 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:52 Download gff for
BS04265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 290..1145 | 16..871 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:52 Download gff for
BS04265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2764305..2764441 | 16..152 | 100 | <- | Plus |
2L | 2764505..2765198 | 153..846 | 100 | <- | Plus |
2L | 2765284..2765308 | 847..871 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:03 Download gff for
BS04265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2764305..2764441 | 16..152 | 100 | <- | Plus |
arm_2L | 2764505..2765198 | 153..846 | 100 | <- | Plus |
arm_2L | 2765284..2765308 | 847..871 | 100 | | Plus |
BS04265.5prime Sequence
915 bp (760 high quality bases) assembled on 2005-11-29
> BS04265.5prime
GAAGTTATCAGTCGACATGCCCATTCACGCCGTGATGGCCAAGCGCCTGC
ACCACCAGCCTACCTTCGATGGGGATCCACCCGGTCCGGATGAGCTGGAC
AGTCCAGCCATCGAGGCGGCGGCCCTCGACATTCCCCCTCCCGAATCCGA
TAAGGCGCTCCAAAAAGGTGTCTGGGAGCGAGCCACAAGTGCTGAGTATA
AGCCGACCACGGATGGGAGCACCGTGCTCCGCTTTGACATCTTGCTGGCC
CACATAATGCCGCCCGATGGCGAGGATGTGAAGATCAAGCGGTTCGTGGT
CTATGAGCTCACTGTTAAGCAGGATGGAGCCACGGAGGACACTCAGCCGG
CAAAGATTGAGCGCCGATACACCGACTTTCGGGAGCTTTATCTGGGCCTT
AAGCGGCAGCATCCGGCGGAGATGGCCAACAAGTACTTCCCAGCCAAGGT
CCTGATGGGTAACTTCAAGTCCGAGCTGATCGGCGAACGGAGTGCAGCCT
TCGAGGCATTCCTCACGTATGTGGCAAGCCAGGCGATGCTCCGGGACTCG
GAGTACTTCCTGCGCTTCCTGCAGCACGACGAACTGACCAGGGCGTGCCA
GTTTCTGGATGAGCGGCGTAACGAAATGGCCATACCTATTCTGGAGAACT
GTTTCCGCTTGCTGAACAAGATATACATGAATCGATCGAGGCCGGTGCTT
TTGATACTCTGCCGTCTAGTGGCTGCCTGCACCTCATCCCCAGTGCCTCA
TCACGCGGCCGAGAGGTGGGCCCTGCTGGCACTGAGTCGCTTCGAGACGT
TGTGCGATATTGATCTGCTGCCGCTCTACATTCCCCTGCTTCACACCTGC
GCCCATCTGTGGTGGCAGCGCGGCCAGGACCAAAAGCCAATCACCGACCG
ACTGACTGACATGTC
BS04265.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3077-PA | 981 | CG3077-RA | 1..899 | 17..915 | 4495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3077-RA | 1372 | CG3077-RA | 164..1062 | 17..915 | 4495 | 100 | Plus |
CG3077-RB | 2025 | CG3077-RB | 162..1053 | 24..915 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2764502..2765200 | 864..166 | 3495 | 100 | Minus |
2L | 23513712 | 2L | 2765282..2765427 | 169..24 | 730 | 100 | Minus |
2L | 23513712 | 2L | 2764388..2764442 | 915..861 | 275 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 03:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1158..1239 | 253..335 | 115 | 63.1 | Plus |
BS04265.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:13 Download gff for
BS04265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-PA | 1..899 | 17..915 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:19 Download gff for
BS04265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-PA | 1..899 | 17..915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:15 Download gff for
BS04265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 161..1062 | 13..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:17:11 Download gff for
BS04265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 161..1062 | 13..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:17:11 Download gff for
BS04265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2764388..2764441 | 862..915 | 100 | <- | Minus |
2L | 2764505..2765198 | 168..861 | 100 | <- | Minus |
2L | 2765284..2765432 | 20..167 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:15 Download gff for
BS04265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2764388..2764441 | 862..915 | 100 | <- | Minus |
arm_2L | 2764505..2765198 | 168..861 | 100 | <- | Minus |
arm_2L | 2765284..2765432 | 20..167 | 99 | | Minus |
BS04265.complete Sequence
1013 bp (1013 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634904
> BS04265.complete
GAAGTTATCAGTCGACATGCCCATTCACGCCGTGATGGCCAAGCGCCTGC
ACCACCAGCCTACCTTCGATGGGGATCCACCCGGTCCGGATGAGCTGGAC
AGTCCAGCCATCGAGGCGGCGGCCCTCGACATTCCCCCTCCCGAATCCGA
TAAGGCGCTCCAAAAAGGTGTCTGGGAGCGAGCCACAAGTGCTGAGTATA
AGCCGACCACGGATGGGAGCACCGTGCTCCGCTTTGACATCTTGCTGGCC
CACATAATGCCGCCCGATGGCGAGGATGTGAAGATCAAGCGGTTCGTGGT
CTATGAGCTCACTGTTAAGCAGGATGGAGCCACGGAGGACACTCAGCCGG
CAAAGATTGAGCGCCGATACACCGACTTTCGGGAGCTTTATCTGGGCCTT
AAGCGGCAGCATCCGGCGGAGATGGCCAACAAGTACTTCCCAGCCAAGGT
CCTGATGGGTAACTTCAAGTCCGAGCTGATCGGCGAACGGAGTGCAGCCT
TCGAGGCATTCCTCACGTATGTGGCAAGCCAGGCGATGCTCCGGGACTCG
GAGTACTTCCTGCGCTTCCTGCAGCACGACGAACTGACCAGGGCGTGCCA
GTTTCTGGATGAGCGGCGTAACGAAATGGCCATACCTATTCTGGAGAACT
GTTTCCGCTTGCTGAACAAGATATACATGAATCGATCGAGGCCGGTGCTT
TTGATACTCTGCCGTCTAGTGGCTGCCTGCACCTCATCCCCAGTGCCTCA
TCACGCGGCCGAGAGGTGGGCCCTGCTGGCACTGAGTCGCTTCGAGACGT
TGTGCGATATTGATCTGCTGCCGCTCTACATTCCCCTGCTTCACACCTGC
GCCCATCTGTGGTGGCAGCGCGGCCAGGACCAAAAGCCAATCACCGACCG
ACTGACTGACATGTCCAAGCAGGGCATCAACACGGCGAACACCGAGAGCC
TCATGCAGGCTATACACAAGATCGATCCTCGCACTGAAACAATTTGAAAG
CTTTCTAGACCAT
BS04265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3077-RA | 981 | CG3077-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
CG3077-RB | 963 | CG3077-PB | 1..963 | 35..997 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3077-RA | 1372 | CG3077-RA | 164..1145 | 17..998 | 4910 | 100 | Plus |
CG3077-RB | 2025 | CG3077-RB | 162..1136 | 24..998 | 4875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2764502..2765200 | 864..166 | 3495 | 100 | Minus |
2L | 23513712 | 2L | 2765282..2765427 | 169..24 | 730 | 100 | Minus |
2L | 23513712 | 2L | 2764305..2764442 | 998..861 | 690 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1158..1239 | 253..335 | 115 | 63.1 | Plus |
BS04265.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:43 Download gff for
BS04265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 1..981 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:03 Download gff for
BS04265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 182..1166 | 13..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:04 Download gff for
BS04265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 164..1143 | 17..996 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:43 Download gff for
BS04265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 182..1166 | 13..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:55 Download gff for
BS04265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 164..1143 | 17..996 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:55 Download gff for
BS04265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2764307..2764441 | 862..996 | 100 | <- | Minus |
2L | 2765284..2765434 | 17..167 | 98 | | Minus |
2L | 2764505..2765198 | 168..861 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:04 Download gff for
BS04265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2765284..2765434 | 17..167 | 98 | | Minus |
arm_2L | 2764307..2764441 | 862..996 | 100 | <- | Minus |
arm_2L | 2764505..2765198 | 168..861 | 100 | <- | Minus |
BS04265.pep Sequence
Translation from 16 to 996
> BS04265.pep
MPIHAVMAKRLHHQPTFDGDPPGPDELDSPAIEAAALDIPPPESDKALQK
GVWERATSAEYKPTTDGSTVLRFDILLAHIMPPDGEDVKIKRFVVYELTV
KQDGATEDTQPAKIERRYTDFRELYLGLKRQHPAEMANKYFPAKVLMGNF
KSELIGERSAAFEAFLTYVASQAMLRDSEYFLRFLQHDELTRACQFLDER
RNEMAIPILENCFRLLNKIYMNRSRPVLLILCRLVAACTSSPVPHHAAER
WALLALSRFETLCDIDLLPLYIPLLHTCAHLWWQRGQDQKPITDRLTDMS
KQGINTANTESLMQAIHKIDPRTETI*
BS04265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3077-PA | 326 | CG3077-PA | 1..326 | 1..326 | 1715 | 100 | Plus |
CG3077-PB | 320 | CG3077-PB | 1..320 | 7..326 | 1683 | 100 | Plus |