Clone BS04268 Report

Search the DGRC for BS04268

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptSh3beta-RA
Protein status:BS04268.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04268.3prime Sequence

507 bp (506 high quality bases) assembled on 2005-12-01

> BS04268.3prime
ATGGTCTAGAAAGCTTTCAAACCTCGGCCTTCTCAGCAGCCTCCTCCTTG
ACATCCACATCGCCATCGCCGGCCTCCGTTTTCTTATCCTCCGCCTCCGT
TTCCGCCTCCTCCTTCTTGGCATCGCCGTTCTCCTGCTTCAGTTCGATTT
GGGCGGTACTAACTGCCGTGGTGTCGGCTGGAGCCAGCTTGAGGAACACC
TCCAGGGTATCGATCTCGTTGGCCATGTCAAAGGCGTCGTAATCACCGCA
GTACTCGTCGTCGTTGAACAGCTGCGGAGGAAGCGGATGACGGGGCTCTG
GATCGCTGACCGTTCCACCGTTGCTTGTCGATTTGTTTTGCATCAGCTCC
TTCTCGGATTCCTTGCCGGGCTCCGTGATGTCCACCGTGTCGTACTTGAT
GTTCTTGCTGTCCAGGATCATCAGAACGCGCTGCTGGCGCTTCTTCACCT
CCTTATTGCCGGACATGCCGCTGACGTAGACTTTCAAGACCATGTCGACT
GATAACT

BS04268.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8582-PA 477 Sh3beta-RA 1..477 493..17 2385 100 Minus
CG8582-PB 477 Sh3beta-RB 1..477 493..17 2385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
Sh3beta-RB 1515 CG8582-RB 327..804 493..16 2390 100 Minus
Sh3beta-RA 1419 CG8582-RA 231..708 493..16 2390 100 Minus
Sh3beta-RE 2338 CG8582-RE 327..797 493..23 2355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7367552..7367986 16..450 2175 100 Plus
3L 28110227 3L 7368886..7368934 445..493 245 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:15:46 has no hits.

BS04268.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:14 Download gff for BS04268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8582-PB 1..477 17..493 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:20 Download gff for BS04268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8582-PB 1..477 17..493 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:18 Download gff for BS04268.3prime
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RA 221..711 11..503 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:50:30 Download gff for BS04268.3prime
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RA 221..711 11..503 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:50:30 Download gff for BS04268.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7367549..7367984 11..448 99 <- Plus
3L 7368890..7368944 449..503 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:18 Download gff for BS04268.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7360649..7361084 11..448 99 <- Plus
arm_3L 7361990..7362044 449..503 92   Plus

BS04268.5prime Sequence

507 bp (506 high quality bases) assembled on 2005-11-29

> BS04268.5prime
GAAGTTATCAGTCGACATGGTCTTGAAAGTCTACGTCAGCGGCATGTCCG
GCAATAAGGAGGTGAAGAAGCGCCAGCAGCGCGTTCTGATGATCCTGGAC
AGCAAGAACATCAAGTACGACACGGTGGACATCACGGAGCCCGGCAAGGA
ATCCGAGAAGGAGCTGATGCAAAACAAATCGACAAGCAACGGTGGAACGG
TCAGCGATCCAGAGCCCCGTCATCCGCTTCCTCCGCAGCTGTTCAACGAC
GACGAGTACTGCGGTGATTACGACGCCTTTGACATGGCCAACGAGATCGA
TACCCTGGAGGTGTTCCTCAAGCTGGCTCCAGCCGACACCACGGCAGTTA
GTACCGCCCAAATCGAACTGAAGCAGGAGAACGGCGATGCCAAGAAGGAG
GAGGCGGAAACGGAGGCGGAGGATAAGAAAACGGAGGCCGGCGATGGCGA
TGTGGATGTCAAGGAGGAGGCTGCTGAGAAGGCCGAGGTTTGAAAGCTTT
CTAGACC

BS04268.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8582-PA 477 Sh3beta-RA 1..477 17..493 2385 100 Plus
CG8582-PB 477 Sh3beta-RB 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Sh3beta-RB 1515 CG8582-RB 327..804 17..494 2390 100 Plus
Sh3beta-RA 1419 CG8582-RA 231..708 17..494 2390 100 Plus
Sh3beta-RE 2338 CG8582-RE 327..797 17..487 2355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7367552..7367986 494..60 2175 100 Minus
3L 28110227 3L 7368886..7368934 65..17 245 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:47:12 has no hits.

BS04268.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:15 Download gff for BS04268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8582-PB 1..477 17..493 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:22 Download gff for BS04268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8582-PB 1..477 17..493 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:52:32 Download gff for BS04268.5prime
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RA 221..711 7..499 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:56 Download gff for BS04268.5prime
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RA 221..711 7..499 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:56 Download gff for BS04268.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7367549..7367984 62..499 99 <- Minus
3L 7368890..7368944 7..61 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:52:32 Download gff for BS04268.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7360649..7361084 62..499 99 <- Minus
arm_3L 7361990..7362044 7..61 92   Minus

BS04268.complete Sequence

509 bp (509 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634905

> BS04268.complete
GAAGTTATCAGTCGACATGGTCTTGAAAGTCTACGTCAGCGGCATGTCCG
GCAATAAGGAGGTGAAGAAGCGCCAGCAGCGCGTTCTGATGATCCTGGAC
AGCAAGAACATCAAGTACGACACGGTGGACATCACGGAGCCCGGCAAGGA
ATCCGAGAAGGAGCTGATGCAAAACAAATCGACAAGCAACGGTGGAACGG
TCAGCGATCCAGAGCCCCGTCATCCGCTTCCTCCGCAGCTGTTCAACGAC
GACGAGTACTGCGGTGATTACGACGCCTTTGACATGGCCAACGAGATCGA
TACCCTGGAGGTGTTCCTCAAGCTGGCTCCAGCCGACACCACGGCAGTTA
GTACCGCCCAAATCGAACTGAAGCAGGAGAACGGCGATGCCAAGAAGGAG
GAGGCGGAAACGGAGGCGGAGGATAAGAAAACGGAGGCCGGCGATGGCGA
TGTGGATGTCAAGGAGGAGGCTGCTGAGAAGGCCGAGGTTTGAAAGCTTT
CTAGACCAT

BS04268.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
Sh3beta-RB 477 CG8582-PB 1..477 17..493 2385 100 Plus
Sh3beta-RA 477 CG8582-PA 1..477 17..493 2385 100 Plus
Sh3beta-RE 1458 CG8582-PE 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
Sh3beta-RB 1515 CG8582-RB 327..804 17..494 2390 100 Plus
Sh3beta-RA 1419 CG8582-RA 231..708 17..494 2390 100 Plus
Sh3beta-RE 2338 CG8582-RE 327..797 17..487 2355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7367552..7367986 494..60 2175 100 Minus
3L 28110227 3L 7368886..7368934 65..17 245 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:05:44 has no hits.

BS04268.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:33 Download gff for BS04268.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RB 1..477 17..493 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:49 Download gff for BS04268.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RB 274..764 7..499 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:45 Download gff for BS04268.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RA 231..706 17..492 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:33 Download gff for BS04268.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RB 274..764 7..499 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:40 Download gff for BS04268.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RA 231..706 17..492 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:40 Download gff for BS04268.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7367554..7367984 62..492 100 <- Minus
3L 7368890..7368934 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:45 Download gff for BS04268.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7360654..7361084 62..492 100 <- Minus
arm_3L 7361990..7362034 17..61 100   Minus

BS04268.pep Sequence

Translation from 16 to 492

> BS04268.pep
MVLKVYVSGMSGNKEVKKRQQRVLMILDSKNIKYDTVDITEPGKESEKEL
MQNKSTSNGGTVSDPEPRHPLPPQLFNDDEYCGDYDAFDMANEIDTLEVF
LKLAPADTTAVSTAQIELKQENGDAKKEEAETEAEDKKTEAGDGDVDVKE
EAAEKAEV*

BS04268.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
Sh3beta-PB 158 CG8582-PB 1..158 1..158 806 100 Plus
Sh3beta-PA 158 CG8582-PA 1..158 1..158 806 100 Plus
Sh3beta-PD 216 CG8582-PD 1..157 1..157 802 100 Plus
Sh3beta-PE 485 CG8582-PE 1..157 1..157 802 100 Plus
Sh3beta-PC 146 CG8582-PC 3..146 15..158 733 99.3 Plus