Clone Sequence Records
BS04268.3prime Sequence
507 bp (506 high quality bases) assembled on 2005-12-01
> BS04268.3prime
ATGGTCTAGAAAGCTTTCAAACCTCGGCCTTCTCAGCAGCCTCCTCCTTG
ACATCCACATCGCCATCGCCGGCCTCCGTTTTCTTATCCTCCGCCTCCGT
TTCCGCCTCCTCCTTCTTGGCATCGCCGTTCTCCTGCTTCAGTTCGATTT
GGGCGGTACTAACTGCCGTGGTGTCGGCTGGAGCCAGCTTGAGGAACACC
TCCAGGGTATCGATCTCGTTGGCCATGTCAAAGGCGTCGTAATCACCGCA
GTACTCGTCGTCGTTGAACAGCTGCGGAGGAAGCGGATGACGGGGCTCTG
GATCGCTGACCGTTCCACCGTTGCTTGTCGATTTGTTTTGCATCAGCTCC
TTCTCGGATTCCTTGCCGGGCTCCGTGATGTCCACCGTGTCGTACTTGAT
GTTCTTGCTGTCCAGGATCATCAGAACGCGCTGCTGGCGCTTCTTCACCT
CCTTATTGCCGGACATGCCGCTGACGTAGACTTTCAAGACCATGTCGACT
GATAACT
BS04268.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8582-PA | 477 | Sh3beta-RA | 1..477 | 493..17 | 2385 | 100 | Minus |
CG8582-PB | 477 | Sh3beta-RB | 1..477 | 493..17 | 2385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sh3beta-RB | 1515 | CG8582-RB | 327..804 | 493..16 | 2390 | 100 | Minus |
Sh3beta-RA | 1419 | CG8582-RA | 231..708 | 493..16 | 2390 | 100 | Minus |
Sh3beta-RE | 2338 | CG8582-RE | 327..797 | 493..23 | 2355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7367552..7367986 | 16..450 | 2175 | 100 | Plus |
3L | 28110227 | 3L | 7368886..7368934 | 445..493 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:15:46 has no hits.
BS04268.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:14 Download gff for
BS04268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8582-PB | 1..477 | 17..493 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:20 Download gff for
BS04268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8582-PB | 1..477 | 17..493 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:18 Download gff for
BS04268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RA | 221..711 | 11..503 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:50:30 Download gff for
BS04268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RA | 221..711 | 11..503 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:50:30 Download gff for
BS04268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7367549..7367984 | 11..448 | 99 | <- | Plus |
3L | 7368890..7368944 | 449..503 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:18 Download gff for
BS04268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7360649..7361084 | 11..448 | 99 | <- | Plus |
arm_3L | 7361990..7362044 | 449..503 | 92 | | Plus |
BS04268.5prime Sequence
507 bp (506 high quality bases) assembled on 2005-11-29
> BS04268.5prime
GAAGTTATCAGTCGACATGGTCTTGAAAGTCTACGTCAGCGGCATGTCCG
GCAATAAGGAGGTGAAGAAGCGCCAGCAGCGCGTTCTGATGATCCTGGAC
AGCAAGAACATCAAGTACGACACGGTGGACATCACGGAGCCCGGCAAGGA
ATCCGAGAAGGAGCTGATGCAAAACAAATCGACAAGCAACGGTGGAACGG
TCAGCGATCCAGAGCCCCGTCATCCGCTTCCTCCGCAGCTGTTCAACGAC
GACGAGTACTGCGGTGATTACGACGCCTTTGACATGGCCAACGAGATCGA
TACCCTGGAGGTGTTCCTCAAGCTGGCTCCAGCCGACACCACGGCAGTTA
GTACCGCCCAAATCGAACTGAAGCAGGAGAACGGCGATGCCAAGAAGGAG
GAGGCGGAAACGGAGGCGGAGGATAAGAAAACGGAGGCCGGCGATGGCGA
TGTGGATGTCAAGGAGGAGGCTGCTGAGAAGGCCGAGGTTTGAAAGCTTT
CTAGACC
BS04268.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8582-PA | 477 | Sh3beta-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
CG8582-PB | 477 | Sh3beta-RB | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sh3beta-RB | 1515 | CG8582-RB | 327..804 | 17..494 | 2390 | 100 | Plus |
Sh3beta-RA | 1419 | CG8582-RA | 231..708 | 17..494 | 2390 | 100 | Plus |
Sh3beta-RE | 2338 | CG8582-RE | 327..797 | 17..487 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7367552..7367986 | 494..60 | 2175 | 100 | Minus |
3L | 28110227 | 3L | 7368886..7368934 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:47:12 has no hits.
BS04268.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:15 Download gff for
BS04268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8582-PB | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:22 Download gff for
BS04268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8582-PB | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:52:32 Download gff for
BS04268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RA | 221..711 | 7..499 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:56 Download gff for
BS04268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RA | 221..711 | 7..499 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:56 Download gff for
BS04268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7367549..7367984 | 62..499 | 99 | <- | Minus |
3L | 7368890..7368944 | 7..61 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:52:32 Download gff for
BS04268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7360649..7361084 | 62..499 | 99 | <- | Minus |
arm_3L | 7361990..7362044 | 7..61 | 92 | | Minus |
BS04268.complete Sequence
509 bp (509 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634905
> BS04268.complete
GAAGTTATCAGTCGACATGGTCTTGAAAGTCTACGTCAGCGGCATGTCCG
GCAATAAGGAGGTGAAGAAGCGCCAGCAGCGCGTTCTGATGATCCTGGAC
AGCAAGAACATCAAGTACGACACGGTGGACATCACGGAGCCCGGCAAGGA
ATCCGAGAAGGAGCTGATGCAAAACAAATCGACAAGCAACGGTGGAACGG
TCAGCGATCCAGAGCCCCGTCATCCGCTTCCTCCGCAGCTGTTCAACGAC
GACGAGTACTGCGGTGATTACGACGCCTTTGACATGGCCAACGAGATCGA
TACCCTGGAGGTGTTCCTCAAGCTGGCTCCAGCCGACACCACGGCAGTTA
GTACCGCCCAAATCGAACTGAAGCAGGAGAACGGCGATGCCAAGAAGGAG
GAGGCGGAAACGGAGGCGGAGGATAAGAAAACGGAGGCCGGCGATGGCGA
TGTGGATGTCAAGGAGGAGGCTGCTGAGAAGGCCGAGGTTTGAAAGCTTT
CTAGACCAT
BS04268.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sh3beta-RB | 477 | CG8582-PB | 1..477 | 17..493 | 2385 | 100 | Plus |
Sh3beta-RA | 477 | CG8582-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Sh3beta-RE | 1458 | CG8582-PE | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sh3beta-RB | 1515 | CG8582-RB | 327..804 | 17..494 | 2390 | 100 | Plus |
Sh3beta-RA | 1419 | CG8582-RA | 231..708 | 17..494 | 2390 | 100 | Plus |
Sh3beta-RE | 2338 | CG8582-RE | 327..797 | 17..487 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7367552..7367986 | 494..60 | 2175 | 100 | Minus |
3L | 28110227 | 3L | 7368886..7368934 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:05:44 has no hits.
BS04268.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:33 Download gff for
BS04268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RB | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:49 Download gff for
BS04268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RB | 274..764 | 7..499 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:45 Download gff for
BS04268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RA | 231..706 | 17..492 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:33 Download gff for
BS04268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RB | 274..764 | 7..499 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:40 Download gff for
BS04268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RA | 231..706 | 17..492 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:40 Download gff for
BS04268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7367554..7367984 | 62..492 | 100 | <- | Minus |
3L | 7368890..7368934 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:45 Download gff for
BS04268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7360654..7361084 | 62..492 | 100 | <- | Minus |
arm_3L | 7361990..7362034 | 17..61 | 100 | | Minus |
BS04268.pep Sequence
Translation from 16 to 492
> BS04268.pep
MVLKVYVSGMSGNKEVKKRQQRVLMILDSKNIKYDTVDITEPGKESEKEL
MQNKSTSNGGTVSDPEPRHPLPPQLFNDDEYCGDYDAFDMANEIDTLEVF
LKLAPADTTAVSTAQIELKQENGDAKKEEAETEAEDKKTEAGDGDVDVKE
EAAEKAEV*
BS04268.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sh3beta-PB | 158 | CG8582-PB | 1..158 | 1..158 | 806 | 100 | Plus |
Sh3beta-PA | 158 | CG8582-PA | 1..158 | 1..158 | 806 | 100 | Plus |
Sh3beta-PD | 216 | CG8582-PD | 1..157 | 1..157 | 802 | 100 | Plus |
Sh3beta-PE | 485 | CG8582-PE | 1..157 | 1..157 | 802 | 100 | Plus |
Sh3beta-PC | 146 | CG8582-PC | 3..146 | 15..158 | 733 | 99.3 | Plus |