Clone Sequence Records
BS04269.3prime Sequence
885 bp (867 high quality bases) assembled on 2005-12-01
> BS04269.3prime
ATGGTCTAGAAAGCTTTTAGCTTCTGCCGCCCTTTAGCCTTTTTCGCTCC
ACTTCCTTGCTGTAGAAATGAAGATGTCTATTGACCCTGGCCACCACATT
TAGCTGGCTTTTGTCCAGATATCTGAAGATCTCGAAGTACAATTCGTCCG
GGAGGCCCAATAGCGAGGGCTGTAGCTTCATCTCCATCTGCATTAGTTGC
TGCGATCGCATGGGCTGGAACAAGTGCTGTTTCAGCTGATATGAGAGTTC
ATCCAGCTTCCGAAAGCGATGGTAGATGGGCTTGTTCTTCGCCTGAATAT
TCAGTACATAGCGTCCGATAGACAGGCTGACGCTGTAGCCAGGCTCCTTC
GACGGAGGTGCTGGGGACAGGGTGATCATAAGCTGATCCCCCAGGCTGAC
GGCCATCAGCCGGCACTGAAGGGCAGCCACCAGAGAAGTCTCCTCGGGAG
CATGCTTGTCCAATAGTGTTCTCAGTCGCATTATATAGACGGTGTCATTG
AAGCACACTTCATATCTAGCTGGTTGTTCGCTCAGGATTCGCACATTCTG
GGCGTGAAAGCTGCTAAATGATGGTACGGGTTGAATGAGGTGTCTCTTCT
GGGCAAATGTCTCCTCCTCCACAAATCCGCATTCCAGGGCCACCAGGTAA
GTCAACAAATGAAGCCACTCGGCAGCCGGCATTTTGCGACATTCCTGATA
CTGATTCAGTAGCTTATCCATATGCTGCGGCACCCATTCCAGAGTAGCAT
GCTCCAGGATCAACGGATTTGTCTCCTGGGTGCTCTTCTCTTGTATCAAA
CGTGGTCGCTGCTTTTTCCCACCTGATCAGGAGCTTTAATGTCCTTTGTG
CCGACCACTTGTTGCTCATTTTGCTGCTGTTGCGG
BS04269.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10855-PA | 945 | CG10855-RA | 142..945 | 820..17 | 4020 | 100 | Minus |
| CG10855-PA | 945 | CG10855-RA | 76..143 | 885..818 | 340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ntc-RA | 1572 | CG10855-RA | 576..1445 | 885..17 | 4325 | 99.9 | Minus |
| CG32264-RK | 5535 | CG32264-RK | 576..639 | 885..822 | 320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3803959..3804762 | 17..820 | 4020 | 100 | Plus |
| 3L | 28110227 | 3L | 3805821..3805884 | 822..885 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:47:29 has no hits.
BS04269.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:17 Download gff for
BS04269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10855-PA | 76..945 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:23 Download gff for
BS04269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10855-PA | 76..945 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:33:58 Download gff for
BS04269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ntc-RA | 576..1448 | 12..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:16 Download gff for
BS04269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ntc-RA | 576..1448 | 12..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:16 Download gff for
BS04269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3803956..3804764 | 12..821 | 99 | <- | Plus |
| 3L | 3805821..3805884 | 822..885 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:33:58 Download gff for
BS04269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3803956..3804764 | 12..821 | 99 | <- | Plus |
| arm_3L | 3805821..3805884 | 822..885 | 100 | | Plus |
BS04269.5prime Sequence
876 bp (775 high quality bases) assembled on 2005-12-01
> BS04269.5prime
GAAGTTATCAGTCGACATGTCAGACACTAAATCCGAAATTGAGGGCTTTA
TAGCCATTCCCACGACATCGGGCGAACAACAACAACAACAGCCGCAACAG
CAGCAAAATGAGCAACAAGTGGTCGGCACAAAGGACATTAAAGCTCCTGA
TCAGGTGGGGAAAAAGCAGCGACCACGTTTGATACAAGAGAAGAGCACCC
AGGAGACAAATCCGTTGATCCTGGAGCATGCTACTCTGGAATGGGTGCCG
CAGCATATGGATAAGCTACTGAATCAGTATCAGGAATGTCGCAAAATGCC
GGCTGCCGAGTGGCTTCATTTGTTGACTTACCTGGTGGCCCTGGAATGCG
GATTTGTGGAGGAGGAGACATTTGCCCAGAAGAGACACCTCATTCAACCC
GTACCATCATTTAGCAGCTTTCACGCCCAGAATGTGCGAATCCTGAGCGA
ACAACCAGCTAGATATGAAGTGTGCTTCAATGACACCGTCTATATAATGC
GACTGAGAACACTATTGGACAAGCATGCTCCCGAGGAGACTTCTCTGGTG
GCTGCCCTTCAGTGCCGGCTGATGGCCGTCAGCCTGGGGGATCAGCTTAT
GATCACCCTGTCCCCAGCACCTCCGTCGAAGGAGCCTGGCTACAGCGTCA
GCCTGTCTATCGGACGCTATGTACTGAATATTCAGGCGAAGAACAAGCCC
ATCTACCATCGCTTTCGGAAGCTGGATGAACTCTCATATCAGCTGAAACA
GCACTTGTTCCAGCCCATGCGATCGCAGCAACTAATGCAGATGGAGATGA
AGCTACAGCCCTCGCTATTGGGCCTCCCGGACGAATTGTACTTCGAGATC
TTCAGATATCTGGACAAAAGCCAGCT
BS04269.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10855-PA | 945 | CG10855-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
| CG12653-PA | 1935 | btd-RA | 241..267 | 80..106 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ntc-RA | 1572 | CG10855-RA | 501..1360 | 17..876 | 4300 | 100 | Plus |
| CG32264-RK | 5535 | CG32264-RK | 501..639 | 17..155 | 695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3804044..3804765 | 876..155 | 3610 | 100 | Minus |
| 3L | 28110227 | 3L | 3805821..3805959 | 155..17 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:23:47 has no hits.
BS04269.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:18 Download gff for
BS04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10855-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:24 Download gff for
BS04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10855-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:49:06 Download gff for
BS04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ntc-RA | 493..1360 | 6..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:31 Download gff for
BS04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ntc-RA | 493..1360 | 6..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:31 Download gff for
BS04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3804044..3804764 | 156..876 | 100 | <- | Minus |
| 3L | 3805821..3805967 | 6..155 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:49:06 Download gff for
BS04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3804044..3804764 | 156..876 | 100 | <- | Minus |
| arm_3L | 3805821..3805967 | 6..155 | 97 | | Minus |
BS04269.complete Sequence
977 bp (977 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634906
> BS04269.complete
GAAGTTATCAGTCGACATGTCAGACACTAAATCCGAAATTGAGGGCTTTA
TAGCCATTCCCACGACATCGGGCGAACAACAACAACAACAGCCGCAACAG
CAGCAAAATGAGCAACAAGTGGTCGGCACAAAGGACATTAAAGCTCCTGA
TCAGGTGGGGAAAAAGCAGCGACCACGTTTGATACAAGAGAAGAGCACCC
AGGAGACAAATCCGTTGATCCTGGAGCATGCTACTCTGGAATGGGTGCCG
CAGCATATGGATAAGCTACTGAATCAGTATCAGGAATGTCGCAAAATGCC
GGCTGCCGAGTGGCTTCATTTGTTGACTTACCTGGTGGCCCTGGAATGCG
GATTTGTGGAGGAGGAGACATTTGCCCAGAAGAGACACCTCATTCAACCC
GTACCATCATTTAGCAGCTTTCACGCCCAGAATGTGCGAATCCTGAGCGA
ACAACCAGCTAGATATGAAGTGTGCTTCAATGACACCGTCTATATAATGC
GACTGAGAACACTATTGGACAAGCATGCTCCCGAGGAGACTTCTCTGGTG
GCTGCCCTTCAGTGCCGGCTGATGGCCGTCAGCCTGGGGGATCAGCTTAT
GATCACCCTGTCCCCAGCACCTCCGTCGAAGGAGCCTGGCTACAGCGTCA
GCCTGTCTATCGGACGCTATGTACTGAATATTCAGGCGAAGAACAAGCCC
ATCTACCATCGCTTTCGGAAGCTGGATGAACTCTCATATCAGCTGAAACA
GCACTTGTTCCAGCCCATGCGATCGCAGCAACTAATGCAGATGGAGATGA
AGCTACAGCCCTCGCTATTGGGCCTCCCGGACGAATTGTACTTCGAGATC
TTCAGATATCTGGACAAAAGCCAGCTAAATGTGGTGGCCAGGGTCAATAG
ACATCTTCATTTCTACAGCAAGGAAGTGGAGCGAAAAAGGCTAAAGGGCG
GCAGAAGCTAAAAGCTTTCTAGACCAT
BS04269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ntc-RA | 945 | CG10855-PA | 1..945 | 17..961 | 4725 | 100 | Plus |
| CG32264-RK | 2469 | CG32264-PK | 1..139 | 17..155 | 695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ntc-RA | 1572 | CG10855-RA | 501..1445 | 17..961 | 4725 | 100 | Plus |
| CG32264-RK | 5535 | CG32264-RK | 501..639 | 17..155 | 695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3803959..3804765 | 961..155 | 4035 | 100 | Minus |
| 3L | 28110227 | 3L | 3805821..3805959 | 155..17 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:27:18 has no hits.
BS04269.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:44 Download gff for
BS04269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10855-RA | 1..945 | 17..961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:04 Download gff for
BS04269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10855-RA | 490..1445 | 6..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:54 Download gff for
BS04269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ntc-RA | 501..1443 | 17..959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:45 Download gff for
BS04269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10855-RA | 490..1445 | 6..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:17 Download gff for
BS04269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ntc-RA | 501..1443 | 17..959 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:17 Download gff for
BS04269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3803961..3804764 | 156..959 | 100 | <- | Minus |
| 3L | 3805821..3805959 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:54 Download gff for
BS04269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3803961..3804764 | 156..959 | 100 | <- | Minus |
| arm_3L | 3805821..3805959 | 17..155 | 100 | | Minus |
BS04269.pep Sequence
Translation from 16 to 960
> BS04269.pep
MSDTKSEIEGFIAIPTTSGEQQQQQPQQQQNEQQVVGTKDIKAPDQVGKK
QRPRLIQEKSTQETNPLILEHATLEWVPQHMDKLLNQYQECRKMPAAEWL
HLLTYLVALECGFVEEETFAQKRHLIQPVPSFSSFHAQNVRILSEQPARY
EVCFNDTVYIMRLRTLLDKHAPEETSLVAALQCRLMAVSLGDQLMITLSP
APPSKEPGYSVSLSIGRYVLNIQAKNKPIYHRFRKLDELSYQLKQHLFQP
MRSQQLMQMEMKLQPSLLGLPDELYFEIFRYLDKSQLNVVARVNRHLHFY
SKEVERKRLKGGRS*
BS04269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ntc-PA | 314 | CG10855-PA | 1..314 | 1..314 | 1622 | 100 | Plus |
| CG32264-PK | 822 | CG32264-PK | 1..46 | 1..46 | 233 | 100 | Plus |
