Clone BS04271 Report

Search the DGRC for BS04271

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG4511-RA
Protein status:BS04271.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04271.3prime Sequence

681 bp (680 high quality bases) assembled on 2005-12-01

> BS04271.3prime
ATGGTCTAGAAAGCTTTTAGTCATCCAGATCTATATCGGAGTCATCCGAG
TCGTAGCCTCCACGTATTGTCTTCTGTGGGCGGTTGATGAATGGTTTGCG
TTTCACATCTGGTGGCTGCATCAGATCGCCCTTGTAGTCAATGGCCCCCG
AGTGGGCGATGCGCCACTCCAGCATTTCGGTGGCGAAGTCGTCGCAGTTG
CCCAGATCGGTGAATCCGACAATGAAGTCCTTGGTCTTGCTGTCCTTCAC
CAGGGCGATGGTGGGTATCACCTTGATGCGCAGTCGCTGGGTGAGGAATG
GAGTCTTTTCGGCATTCACCTTGCAAAACTTGGCCTCCACGTGCTTGGCC
GCGAGGATCTTCAGGTGCATGTCCACGATCTTGCAGCGCTCGGTGCTGTC
GCGGTAAAAGTGGCAAACAATGTTGGGCGACTTTTTCGACATCTCGAAGA
ACTCTTTTTCGTCGGCCAGCTCGGTGTAGGTGCCATGACCGTTTCTGAGC
CACTCCTGCTTCTTGTTGTTCAGGTCCTTCATTTCGCGGAGCCGCTGCTC
CCGCAGGACCTTTAGGTCATCCGAATCGAGGTTGTCCAGGCGGTCGAGCT
GCTGGTCCAGCTGCTGCTCGATGGTCTTGGCGGCCGTGAACAGTTGGTTC
TCCAGGATGTTGGCCATGTCGACTGATAACT

BS04271.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-PA 651 CG4511-RA 1..651 667..17 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-RB 1407 CG4511-RB 110..762 669..17 3265 100 Minus
CG4511-RA 1452 CG4511-RA 155..807 669..17 3265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10855294..10855767 490..17 2370 100 Minus
3R 32079331 3R 10854854..10855033 669..490 900 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:50:24 has no hits.

BS04271.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:19 Download gff for BS04271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-PA 1..651 17..667 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:25 Download gff for BS04271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-PA 1..651 17..667 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:58:19 Download gff for BS04271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 155..809 12..669 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:28 Download gff for BS04271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 155..809 12..669 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:28 Download gff for BS04271.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10854854..10855032 491..669 100 -> Minus
3R 10855294..10855769 12..490 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:58:19 Download gff for BS04271.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6680576..6680754 491..669 100 -> Minus
arm_3R 6681016..6681491 12..490 99   Minus

BS04271.5prime Sequence

681 bp (680 high quality bases) assembled on 2005-11-29

> BS04271.5prime
GAAGTTATCAGTCGACATGGCCAACATCCTGGAGAACCAACTGTTCACGG
CCGCCAAGACCATCGAGCAGCAGCTGGACCAGCAGCTCGACCGCCTGGAC
AACCTCGATTCGGATGACCTAAAGGTCCTGCGGGAGCAGCGGCTCCGCGA
AATGAAGGACCTGAACAACAAGAAGCAGGAGTGGCTCAGAAACGGTCATG
GCACCTACACCGAGCTGGCCGACGAAAAAGAGTTCTTCGAGATGTCGAAA
AAGTCGCCCAACATTGTTTGCCACTTTTACCGCGACAGCACCGAGCGCTG
CAAGATCGTGGACATGCACCTGAAGATCCTCGCGGCCAAGCACGTGGAGG
CCAAGTTTTGCAAGGTGAATGCCGAAAAGACTCCATTCCTCACCCAGCGA
CTGCGCATCAAGGTGATACCCACCATCGCCCTGGTGAAGGACAGCAAGAC
CAAGGACTTCATTGTCGGATTCACCGATCTGGGCAACTGCGACGACTTCG
CCACCGAAATGCTGGAGTGGCGCATCGCCCACTCGGGGGCCATTGACTAC
AAGGGCGATCTGATGCAGCCACCAGATGTGAAACGCAAACCATTCATCAA
CCGCCCACAGAAGACAATACGTGGAGGCTACGACTCGGATGACTCCGATA
TAGATCTGGATGACTAAAAGCTTTCTAGACC

BS04271.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-PA 651 CG4511-RA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-RB 1407 CG4511-RB 110..762 15..667 3265 100 Plus
CG4511-RA 1452 CG4511-RA 155..807 15..667 3265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10855294..10855767 194..667 2370 100 Plus
3R 32079331 3R 10854854..10855033 15..194 900 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:50:12 has no hits.

BS04271.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:20 Download gff for BS04271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-PA 1..651 17..667 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:27 Download gff for BS04271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-PA 1..651 17..667 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:54:41 Download gff for BS04271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 155..809 15..672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:09:55 Download gff for BS04271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 155..809 15..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:09:55 Download gff for BS04271.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10854854..10855032 15..193 100 -> Plus
3R 10855294..10855769 194..672 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:54:41 Download gff for BS04271.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6680576..6680754 15..193 100 -> Plus
arm_3R 6681016..6681491 194..672 99   Plus

BS04271.complete Sequence

683 bp (683 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634907

> BS04271.complete
GAAGTTATCAGTCGACATGGCCAACATCCTGGAGAACCAACTGTTCACGG
CCGCCAAGACCATCGAGCAGCAGCTGGACCAGCAGCTCGACCGCCTGGAC
AACCTCGATTCGGATGACCTAAAGGTCCTGCGGGAGCAGCGGCTCCGCGA
AATGAAGGACCTGAACAACAAGAAGCAGGAGTGGCTCAGAAACGGTCATG
GCACCTACACCGAGCTGGCCGACGAAAAAGAGTTCTTCGAGATGTCGAAA
AAGTCGCCCAACATTGTTTGCCACTTTTACCGCGACAGCACCGAGCGCTG
CAAGATCGTGGACATGCACCTGAAGATCCTCGCGGCCAAGCACGTGGAGG
CCAAGTTTTGCAAGGTGAATGCCGAAAAGACTCCATTCCTCACCCAGCGA
CTGCGCATCAAGGTGATACCCACCATCGCCCTGGTGAAGGACAGCAAGAC
CAAGGACTTCATTGTCGGATTCACCGATCTGGGCAACTGCGACGACTTCG
CCACCGAAATGCTGGAGTGGCGCATCGCCCACTCGGGGGCCATTGACTAC
AAGGGCGATCTGATGCAGCCACCAGATGTGAAACGCAAACCATTCATCAA
CCGCCCACAGAAGACAATACGTGGAGGCTACGACTCGGATGACTCCGATA
TAGATCTGGATGACTAAAAGCTTTCTAGACCAT

BS04271.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-RB 651 CG4511-PB 1..651 17..667 3255 100 Plus
CG4511-RA 651 CG4511-PA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-RB 1407 CG4511-RB 110..762 15..667 3265 100 Plus
CG4511-RA 1452 CG4511-RA 155..807 15..667 3265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10855294..10855767 194..667 2370 100 Plus
3R 32079331 3R 10854854..10855033 15..194 900 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:14:17 has no hits.

BS04271.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:46 Download gff for BS04271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 1..651 17..667 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:06 Download gff for BS04271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 153..807 15..672 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:36 Download gff for BS04271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 157..805 17..665 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:46 Download gff for BS04271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 153..807 15..672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:23 Download gff for BS04271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 157..805 17..665 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:23 Download gff for BS04271.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10854856..10855032 17..193 100 -> Plus
3R 10855294..10855765 194..665 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:36 Download gff for BS04271.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6680578..6680754 17..193 100 -> Plus
arm_3R 6681016..6681487 194..665 100   Plus

BS04271.pep Sequence

Translation from 16 to 666

> BS04271.pep
MANILENQLFTAAKTIEQQLDQQLDRLDNLDSDDLKVLREQRLREMKDLN
NKKQEWLRNGHGTYTELADEKEFFEMSKKSPNIVCHFYRDSTERCKIVDM
HLKILAAKHVEAKFCKVNAEKTPFLTQRLRIKVIPTIALVKDSKTKDFIV
GFTDLGNCDDFATEMLEWRIAHSGAIDYKGDLMQPPDVKRKPFINRPQKT
IRGGYDSDDSDIDLDD*

BS04271.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-PB 216 CG4511-PB 1..216 1..216 1134 100 Plus
CG4511-PA 216 CG4511-PA 1..216 1..216 1134 100 Plus