Clone BS04275 Report

Search the DGRC for BS04275

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG33713-RA
Protein status:BS04275.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04275.5prime Sequence

762 bp (761 high quality bases) assembled on 2005-11-29

> BS04275.5prime
GAAGTTATCAGTCGACATGTCGGACAGCGATACGGACACCGTGGACGAGC
TTTTCCACCTTGCCACCGAGCATGTGGCCAAGCAGTCAAACAGCATTGGT
TCCGCGGACCTTTTAATATTTTACGGATACTACAAGCAGGCCACGAATGG
CCCCTGCAAGGAGCAAAGTCCGGGTCTGCTTCAACTGCAGGCCAAGAGCA
AGTGGCAGGCTTGGCGCAATCTGGGAACAATGTCCCAGTCCGCTGCCCGG
CAGGCCTACGTCCAGAAGCTGCAGGAGCTTCAACCCAACTGGCGGTCCCG
GCGCAACCCAGGCTGGGTCGTTCATTCCATTGAGTCGGTCCCACTGGAGG
ACCAACGTTTGGACAGTGAAAAGACCCTGTTTGACCACGTGAAGGAGAAC
AATCTAGACAGGCTGAGGGAACTGCTGCAGCCAAGTGACTTGGTTAAGCT
GGACGAGCATGGCATGGCGCTCATCCACTGGGCTACCGATCGCAATGCCG
TCGAAATCATACAGTTCCTGGTGCGGAGTGGGGCCAGTGTAAATCAGCGA
GATGCGGAGCAACAGACTCCGCTGCACTACGCCGCCAGTTGTGGACACTT
GGAGGCGCTCCAATGCCTGTTGGAGCTACACGCCAGCCTGGAGCTACGCG
ATTCAGATGGACAGACTTGTTACGACGTGGCTGACGATGAGCAGATCTGC
CAGGTGCTTCAAACGGAACGGGAACGACTCGCTGGATCCGCGTCCTAAAA
GCTTTCTAGACC

BS04275.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG33713-PA 732 CG33713-RA 1..732 17..748 3660 100 Plus
CG33713-PB 732 CG33713-RB 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG33714-RB 1279 CG33714-RB 417..1151 14..748 3675 100 Plus
CG33714-RA 1278 CG33714-RA 416..1150 14..748 3675 100 Plus
CG33713-RB 1278 CG33713-RB 416..1150 14..748 3675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21318064..21318798 748..14 3675 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:59:29 has no hits.

BS04275.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:25 Download gff for BS04275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33071-PB 1..732 17..748 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:32 Download gff for BS04275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33713-PB 1..732 17..748 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:31 Download gff for BS04275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 416..1150 14..748 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:15 Download gff for BS04275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 416..1150 14..748 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:15 Download gff for BS04275.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21318064..21318798 14..748 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:31 Download gff for BS04275.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21189091..21189825 14..748 100   Minus

BS04275.3prime Sequence

762 bp (761 high quality bases) assembled on 2005-12-01

> BS04275.3prime
ATGGTCTAGAAAGCTTTTAGGACGCGGATCCAGCGAGTCGTTCCCGTTCC
GTTTGAAGCACCTGGCAGATCTGCTCATCGTCAGCCACGTCGTAACAAGT
CTGTCCATCTGAATCGCGTAGCTCCAGGCTGGCGTGTAGCTCCAACAGGC
ATTGGAGCGCCTCCAAGTGTCCACAACTGGCGGCGTAGTGCAGCGGAGTC
TGTTGCTCCGCATCTCGCTGATTTACACTGGCCCCACTCCGCACCAGGAA
CTGTATGATTTCGACGGCATTGCGATCGGTAGCCCAGTGGATGAGCGCCA
TGCCATGCTCGTCCAGCTTAACCAAGTCACTTGGCTGCAGCAGTTCCCTC
AGCCTGTCTAGATTGTTCTCCTTCACGTGGTCAAACAGGGTCTTTTCACT
GTCCAAACGTTGGTCCTCCAGTGGGACCGACTCAATGGAATGAACGACCC
AGCCTGGGTTGCGCCGGGACCGCCAGTTGGGTTGAAGCTCCTGCAGCTTC
TGGACGTAGGCCTGCCGGGCAGCGGACTGGGACATTGTTCCCAGATTGCG
CCAAGCCTGCCACTTGCTCTTGGCCTGCAGTTGAAGCAGACCCGGACTTT
GCTCCTTGCAGGGGCCATTCGTGGCCTGCTTGTAGTATCCGTAAAATATT
AAAAGGTCCGCGGAACCAATGCTGTTTGACTGCTTGGCCACATGCTCGGT
GGCAAGGTGGAAAAGCTCGTCCACGGTGTCCGTATCGCTGTCCGACATGT
CGACTGATAACT

BS04275.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG33713-PA 732 CG33713-RA 1..732 748..17 3660 100 Minus
CG33713-PB 732 CG33713-RB 1..732 748..17 3660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG33714-RB 1279 CG33714-RB 417..1151 751..17 3675 100 Minus
CG33714-RA 1278 CG33714-RA 416..1150 751..17 3675 100 Minus
CG33713-RB 1278 CG33713-RB 416..1150 751..17 3675 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21318064..21318798 17..751 3675 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:15:28 has no hits.

BS04275.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:24 Download gff for BS04275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33071-PB 1..732 17..748 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:31 Download gff for BS04275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33713-PB 1..732 17..748 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:17 Download gff for BS04275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 416..1150 17..751 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:48:57 Download gff for BS04275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 416..1150 17..751 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:48:57 Download gff for BS04275.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21318064..21318798 17..751 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:17 Download gff for BS04275.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21189091..21189825 17..751 100   Plus

BS04275.complete Sequence

764 bp (764 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634909

> BS04275.complete
GAAGTTATCAGTCGACATGTCGGACAGCGATACGGACACCGTGGACGAGC
TTTTCCACCTTGCCACCGAGCATGTGGCCAAGCAGTCAAACAGCATTGGT
TCCGCGGACCTTTTAATATTTTACGGATACTACAAGCAGGCCACGAATGG
CCCCTGCAAGGAGCAAAGTCCGGGTCTGCTTCAACTGCAGGCCAAGAGCA
AGTGGCAGGCTTGGCGCAATCTGGGAACAATGTCCCAGTCCGCTGCCCGG
CAGGCCTACGTCCAGAAGCTGCAGGAGCTTCAACCCAACTGGCGGTCCCG
GCGCAACCCAGGCTGGGTCGTTCATTCCATTGAGTCGGTCCCACTGGAGG
ACCAACGTTTGGACAGTGAAAAGACCCTGTTTGACCACGTGAAGGAGAAC
AATCTAGACAGGCTGAGGGAACTGCTGCAGCCAAGTGACTTGGTTAAGCT
GGACGAGCATGGCATGGCGCTCATCCACTGGGCTACCGATCGCAATGCCG
TCGAAATCATACAGTTCCTGGTGCGGAGTGGGGCCAGTGTAAATCAGCGA
GATGCGGAGCAACAGACTCCGCTGCACTACGCCGCCAGTTGTGGACACTT
GGAGGCGCTCCAATGCCTGTTGGAGCTACACGCCAGCCTGGAGCTACGCG
ATTCAGATGGACAGACTTGTTACGACGTGGCTGACGATGAGCAGATCTGC
CAGGTGCTTCAAACGGAACGGGAACGACTCGCTGGATCCGCGTCCTAAAA
GCTTTCTAGACCAT

BS04275.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG33713-RB 732 CG33713-PB 1..732 17..748 3660 100 Plus
CG33713-RA 732 CG33713-PA 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG33714-RB 1279 CG33714-RB 417..1151 14..748 3675 100 Plus
CG33714-RA 1278 CG33714-RA 416..1150 14..748 3675 100 Plus
CG33713-RB 1278 CG33713-RB 416..1150 14..748 3675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21318064..21318798 748..14 3675 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:37:44 has no hits.

BS04275.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:56 Download gff for BS04275.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 1..732 17..748 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:43 Download gff for BS04275.complete
Subject Subject Range Query Range Percent Splice Strand
CG33714-RA 416..1150 14..748 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:24 Download gff for BS04275.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 419..1148 17..746 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:57 Download gff for BS04275.complete
Subject Subject Range Query Range Percent Splice Strand
CG33714-RA 416..1150 14..748 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:15 Download gff for BS04275.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 419..1148 17..746 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:15 Download gff for BS04275.complete
Subject Subject Range Query Range Percent Splice Strand
X 21318066..21318795 17..746 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:24 Download gff for BS04275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21189093..21189822 17..746 100   Minus

BS04275.pep Sequence

Translation from 16 to 747

> BS04275.pep
MSDSDTDTVDELFHLATEHVAKQSNSIGSADLLIFYGYYKQATNGPCKEQ
SPGLLQLQAKSKWQAWRNLGTMSQSAARQAYVQKLQELQPNWRSRRNPGW
VVHSIESVPLEDQRLDSEKTLFDHVKENNLDRLRELLQPSDLVKLDEHGM
ALIHWATDRNAVEIIQFLVRSGASVNQRDAEQQTPLHYAASCGHLEALQC
LLELHASLELRDSDGQTCYDVADDEQICQVLQTERERLAGSAS*

BS04275.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG33713-PB 243 CG33713-PB 1..243 1..243 1267 100 Plus
CG33713-PA 243 CG33713-PA 1..243 1..243 1267 100 Plus
MYPT-75D-PB 635 CG6896-PB 118..237 116..234 180 33.3 Plus
MYPT-75D-PD 741 CG6896-PD 118..237 116..234 180 33.3 Plus
MYPT-75D-PC 741 CG6896-PC 118..237 116..234 180 33.3 Plus