Clone Sequence Records
BS04276.3prime Sequence
903 bp (736 high quality bases) assembled on 2005-12-01
> BS04276.3prime
ATGGTCTAGAAAGCTTTTATATTTTCTGAAACTTCGCAATAAAAAAGCCC
ACAGTGTCCGCATTTGCTCCGCTTGGACCGAAGCGCTGCAACAGACGAGA
TTTACATGCCTCGAAACCGGGAAGCGGAAGTCCGGGACCGCCCCACCGGG
GAGTGGCATCTGTTAGCCGCAGCTCGACAAATTTTCTTAGTGCCCAGGCC
ACAAGACATTCGCACTCATCCTCGGTGACGGTGCACGTGCTATATACAAG
GATGCCGCCAGGACGAACGAGCTGCACTGCCTGTTCAAATAGCCGGCGCT
GAATATGGGGATATGAGGACAAGACCTTAACCTGTTTAATGCTGCAGGAC
AACTGTGGCCGGTTGCCCAGCCCACTGCAGGGTGCATCGAGCAAGATTCG
GTCAAAGCTTTCACATGGAAACGGAGGCCCAGTGAATTCTCCCACGGGTG
CAGATGGAGCGTCCGCTGCCACTGCCTCGGTGGAGTTAAAAACATGCGCC
GTTATGCTTTTGTAGTGTCCCAATTTGGGCAGCATGCTGCGGACGCGACT
GGCCGAATTGTCTAGGGCCACCACAGATCCCCGATCGCCCATCAACTCGG
CTATGTGGCTTGTTTTGTTACCCGGAGCGGCACACATGTCCAGTATGCGC
TCGCCGGGCTGCGGATCCAGGACACGGACGCAAACAATAGAAGGCAGGTT
TTGCAACAGGCCGTCTTCGCTGCTTAGATCCCCCAGCGTGGGCACTCCGC
TGACGTTGGACTGCATTTCCACGGCCACTCCAGAGGCGGGCTTCTCCGCG
TTGTTGAACAGCTGATACCGCTGCATTAACACCTTGCCTGTACCCAGGAA
AACCTTATTTGGGCTTTCGTACCGCTTGACCGTCCCGCGCTTGCATTTTC
CAT
BS04276.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11109-PB | 1320 | CG11109-RB | 434..1320 | 903..17 | 4435 | 100 | Minus |
CG11109-PA | 1077 | CG11109-RA | 191..1077 | 903..17 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:31:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11109-RA | 1445 | CG11109-RA | 545..1432 | 903..16 | 4440 | 100 | Minus |
CG11109-RB | 1415 | CG11109-RB | 515..1402 | 903..16 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:31:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22872802..22873689 | 903..16 | 4440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 13:31:45 has no hits.
BS04276.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:27 Download gff for
BS04276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-PB | 434..1320 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:34 Download gff for
BS04276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-PA | 191..1077 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:53:48 Download gff for
BS04276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RB | 515..1408 | 11..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:29 Download gff for
BS04276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RB | 515..1408 | 11..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:29 Download gff for
BS04276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22872802..22873695 | 11..903 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:53:48 Download gff for
BS04276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22865902..22866795 | 11..903 | 99 | | Minus |
BS04276.5prime Sequence
888 bp (780 high quality bases) assembled on 2005-11-29
> BS04276.5prime
GAAGTTATCAGTCGACATGTTGTGCATTGATCCGCTGGACTCACAGCTCA
CCAAAGCTGTGGCCGACTCCGAGCTCAAGGAGGTAGTGGTTGACACTAAC
TGCGGAGCTGCACTACTGCGAGGCGCCCACATATACGCCCCCGGTGTTTT
AGCTATGGAGTCAAACACTGAGCGGGAGGAACTCGTCAATGTCTACGCAG
ATCTGGATGGAAAATGCAAGCGCGGGACGGTCAAGCGGTACGAAAGCCCA
AATAAGGTTTTCCTGGGTACAGGCAAGGTGTTAATGCAGCGGTATCAGCT
GTTCAACAACGCGGAGAAGCCCGCCTCTGGAGTGGCCGTGGAAATGCAGT
CCAACGTCAGCGGAGTGCCCACGCTGGGGGATCTAAGCAGCGAAGACGGC
CTGTTGCAAAACCTGCCTTCTATTGTTTGCGTCCGTGTCCTGGATCCGCA
GCCCGGCGAGCGCATACTGGACATGTGTGCCGCTCCGGGTAACAAAACAA
GCCACATAGCCGAGTTGATGGGCGATCGGGGATCTGTGGTGGCCCTAGAC
AATTCGGCCAGTCGCGTCCGCAGCATGCTGCCCAAATTGGGACACTACAA
AAGCATAACGGCGCATGTTTTTAACTCCACCGAGGCAGTGGCAGCGGACG
CTCCATCTGCACCCGTGGGAGAATTCACTGGGCCTCCGTTTCCATGTGAA
AGCTTTGACCGAATCTTGCTCGATGCACCCTGCAGTGGGCTGGGCAACCG
GCCACAGTTGTCCTGCAGCATTAAACAGGTTAAGGTCTTGTCCTCATATC
CCCATATTCAGCGCCGGCTATTTGAACAGGCAGTGCAGCTCGTTCGTCCT
GGCGGCATCCTTGTATATAGCACGTGCACCGTCACCGA
BS04276.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11109-PB | 1320 | CG11109-RB | 244..1115 | 17..888 | 4360 | 100 | Plus |
CG11109-PA | 1077 | CG11109-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11109-RA | 1445 | CG11109-RA | 351..1226 | 13..888 | 4365 | 99.9 | Plus |
CG11109-RB | 1415 | CG11109-RB | 321..1196 | 13..888 | 4365 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22872608..22873483 | 13..888 | 4365 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:22:46 has no hits.
BS04276.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:28 Download gff for
BS04276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-PB | 240..1114 | 13..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:35 Download gff for
BS04276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-PA | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:52 Download gff for
BS04276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RB | 321..1195 | 13..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:15 Download gff for
BS04276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RB | 321..1195 | 13..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:15 Download gff for
BS04276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22872608..22873482 | 13..887 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:52 Download gff for
BS04276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22865708..22866582 | 13..887 | 99 | | Plus |
BS04276.complete Sequence
1109 bp (1109 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634910
> BS04276.complete
GAAGTTATCAGTCGACATGTTGTGCATTGATCCGCTGGACTCACAGCTCA
CCAAAGCTGTGGCCGACTCCGAGCTCAAGGAGGTAGTGGTTGACACTAAC
TGCGGAGCTGCACTACTGCGAGGCGCCCACATATACGCCCCCGGTGTTTT
AGCTATGGAGTCAAACACTGAGCGGGAGGAACTCGTCAATGTCTACGCAG
ATCTGGATGGAAAATGCAAGCGCGGGACGGTCAAGCGGTACGAAAGCCCA
AATAAGGTTTTCCTGGGTACAGGCAAGGTGTTAATGCAGCGGTATCAGCT
GTTCAACAACGCGGAGAAGCCCGCCTCTGGAGTGGCCGTGGAAATGCAGT
CCAACGTCAGCGGAGTGCCCACGCTGGGGGATCTAAGCAGCGAAGACGGC
CTGTTGCAAAACCTGCCTTCTATTGTTTGCGTCCGTGTCCTGGATCCGCA
GCCCGGCGAGCGCATACTGGACATGTGTGCCGCTCCGGGTAACAAAACAA
GCCACATAGCCGAGTTGATGGGCGATCGGGGATCTGTGGTGGCCCTAGAC
AATTCGGCCAGTCGCGTCCGCAGCATGCTGCCCAAATTGGGACACTACAA
AAGCATAACGGCGCATGTTTTTAACTCCACCGAGGCAGTGGCAGCGGACG
CTCCATCTGCACCCGTGGGAGAATTCACTGGGCCTCCGTTTCCATGTGAA
AGCTTTGACCGAATCTTGCTCGATGCACCCTGCAGTGGGCTGGGCAACCG
GCCACAGTTGTCCTGCAGCATTAAACAGGTTAAGGTCTTGTCCTCATATC
CCCATATTCAGCGCCGGCTATTTGAACAGGCAGTGCAGCTCGTTCGTCCT
GGCGGCATCCTTGTATATAGCACGTGCACCGTCACCGAGGATGAGTGCGA
ATGTCTTGTGGCCTGGGCACTAAGAAAATTTGTCGAGCTGCGGCTAACAG
ATGCCACTCCCCGGTGGGGCGGTCCCGGACTTCCGCTTCCCGGTTTCGAG
GCATGTAAATCTCGTCTGTTGCAGCGCTTCGGTCCAAGCGGAGCAAATGC
GGACACTGTGGGCTTTTTTATTGCGAAGTTTCAGAAAATATAAAAGCTTT
CTAGACCAT
BS04276.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11109-RB | 1320 | CG11109-PB | 240..1320 | 13..1093 | 5390 | 99.9 | Plus |
CG11109-RA | 1077 | CG11109-PA | 1..1077 | 17..1093 | 5385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11109-RA | 1445 | CG11109-RA | 351..1432 | 13..1094 | 5395 | 99.9 | Plus |
CG11109-RB | 1415 | CG11109-RB | 321..1402 | 13..1094 | 5395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22872608..22873689 | 13..1094 | 5395 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:29:38 has no hits.
BS04276.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:30 Download gff for
BS04276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RB | 240..1320 | 13..1093 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:54 Download gff for
BS04276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RA | 351..1438 | 13..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:13 Download gff for
BS04276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RB | 330..1392 | 22..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:30 Download gff for
BS04276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RA | 351..1438 | 13..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:11 Download gff for
BS04276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RB | 330..1392 | 22..1084 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:11 Download gff for
BS04276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22872617..22873679 | 22..1084 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:13 Download gff for
BS04276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22865717..22866779 | 22..1084 | 100 | | Plus |
BS04276.pep Sequence
Translation from 16 to 1092
> BS04276.pep
MLCIDPLDSQLTKAVADSELKEVVVDTNCGAALLRGAHIYAPGVLAMESN
TEREELVNVYADLDGKCKRGTVKRYESPNKVFLGTGKVLMQRYQLFNNAE
KPASGVAVEMQSNVSGVPTLGDLSSEDGLLQNLPSIVCVRVLDPQPGERI
LDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPKLGHYKSITAH
VFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCSGLGNRPQLSC
SIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAW
ALRKFVELRLTDATPRWGGPGLPLPGFEACKSRLLQRFGPSGANADTVGF
FIAKFQKI*
BS04276.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11109-PA | 358 | CG11109-PA | 1..358 | 1..358 | 1859 | 100 | Plus |
CG11109-PB | 439 | CG11109-PB | 82..439 | 1..358 | 1859 | 100 | Plus |
CG8545-PA | 891 | CG8545-PA | 418..637 | 129..357 | 245 | 31.7 | Plus |