Clone BS04276 Report

Search the DGRC for BS04276

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG11109-RA
Protein status:BS04276.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04276.3prime Sequence

903 bp (736 high quality bases) assembled on 2005-12-01

> BS04276.3prime
ATGGTCTAGAAAGCTTTTATATTTTCTGAAACTTCGCAATAAAAAAGCCC
ACAGTGTCCGCATTTGCTCCGCTTGGACCGAAGCGCTGCAACAGACGAGA
TTTACATGCCTCGAAACCGGGAAGCGGAAGTCCGGGACCGCCCCACCGGG
GAGTGGCATCTGTTAGCCGCAGCTCGACAAATTTTCTTAGTGCCCAGGCC
ACAAGACATTCGCACTCATCCTCGGTGACGGTGCACGTGCTATATACAAG
GATGCCGCCAGGACGAACGAGCTGCACTGCCTGTTCAAATAGCCGGCGCT
GAATATGGGGATATGAGGACAAGACCTTAACCTGTTTAATGCTGCAGGAC
AACTGTGGCCGGTTGCCCAGCCCACTGCAGGGTGCATCGAGCAAGATTCG
GTCAAAGCTTTCACATGGAAACGGAGGCCCAGTGAATTCTCCCACGGGTG
CAGATGGAGCGTCCGCTGCCACTGCCTCGGTGGAGTTAAAAACATGCGCC
GTTATGCTTTTGTAGTGTCCCAATTTGGGCAGCATGCTGCGGACGCGACT
GGCCGAATTGTCTAGGGCCACCACAGATCCCCGATCGCCCATCAACTCGG
CTATGTGGCTTGTTTTGTTACCCGGAGCGGCACACATGTCCAGTATGCGC
TCGCCGGGCTGCGGATCCAGGACACGGACGCAAACAATAGAAGGCAGGTT
TTGCAACAGGCCGTCTTCGCTGCTTAGATCCCCCAGCGTGGGCACTCCGC
TGACGTTGGACTGCATTTCCACGGCCACTCCAGAGGCGGGCTTCTCCGCG
TTGTTGAACAGCTGATACCGCTGCATTAACACCTTGCCTGTACCCAGGAA
AACCTTATTTGGGCTTTCGTACCGCTTGACCGTCCCGCGCTTGCATTTTC
CAT

BS04276.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-PB 1320 CG11109-RB 434..1320 903..17 4435 100 Minus
CG11109-PA 1077 CG11109-RA 191..1077 903..17 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-RA 1445 CG11109-RA 545..1432 903..16 4440 100 Minus
CG11109-RB 1415 CG11109-RB 515..1402 903..16 4440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22872802..22873689 903..16 4440 100 Minus
Blast to na_te.dros performed on 2015-02-06 13:31:45 has no hits.

BS04276.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:27 Download gff for BS04276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-PB 434..1320 17..903 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:34 Download gff for BS04276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-PA 191..1077 17..903 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:53:48 Download gff for BS04276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 515..1408 11..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:29 Download gff for BS04276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 515..1408 11..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:29 Download gff for BS04276.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22872802..22873695 11..903 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:53:48 Download gff for BS04276.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22865902..22866795 11..903 99   Minus

BS04276.5prime Sequence

888 bp (780 high quality bases) assembled on 2005-11-29

> BS04276.5prime
GAAGTTATCAGTCGACATGTTGTGCATTGATCCGCTGGACTCACAGCTCA
CCAAAGCTGTGGCCGACTCCGAGCTCAAGGAGGTAGTGGTTGACACTAAC
TGCGGAGCTGCACTACTGCGAGGCGCCCACATATACGCCCCCGGTGTTTT
AGCTATGGAGTCAAACACTGAGCGGGAGGAACTCGTCAATGTCTACGCAG
ATCTGGATGGAAAATGCAAGCGCGGGACGGTCAAGCGGTACGAAAGCCCA
AATAAGGTTTTCCTGGGTACAGGCAAGGTGTTAATGCAGCGGTATCAGCT
GTTCAACAACGCGGAGAAGCCCGCCTCTGGAGTGGCCGTGGAAATGCAGT
CCAACGTCAGCGGAGTGCCCACGCTGGGGGATCTAAGCAGCGAAGACGGC
CTGTTGCAAAACCTGCCTTCTATTGTTTGCGTCCGTGTCCTGGATCCGCA
GCCCGGCGAGCGCATACTGGACATGTGTGCCGCTCCGGGTAACAAAACAA
GCCACATAGCCGAGTTGATGGGCGATCGGGGATCTGTGGTGGCCCTAGAC
AATTCGGCCAGTCGCGTCCGCAGCATGCTGCCCAAATTGGGACACTACAA
AAGCATAACGGCGCATGTTTTTAACTCCACCGAGGCAGTGGCAGCGGACG
CTCCATCTGCACCCGTGGGAGAATTCACTGGGCCTCCGTTTCCATGTGAA
AGCTTTGACCGAATCTTGCTCGATGCACCCTGCAGTGGGCTGGGCAACCG
GCCACAGTTGTCCTGCAGCATTAAACAGGTTAAGGTCTTGTCCTCATATC
CCCATATTCAGCGCCGGCTATTTGAACAGGCAGTGCAGCTCGTTCGTCCT
GGCGGCATCCTTGTATATAGCACGTGCACCGTCACCGA

BS04276.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-PB 1320 CG11109-RB 244..1115 17..888 4360 100 Plus
CG11109-PA 1077 CG11109-RA 1..872 17..888 4360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-RA 1445 CG11109-RA 351..1226 13..888 4365 99.9 Plus
CG11109-RB 1415 CG11109-RB 321..1196 13..888 4365 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22872608..22873483 13..888 4365 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 21:22:46 has no hits.

BS04276.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:28 Download gff for BS04276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-PB 240..1114 13..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:35 Download gff for BS04276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:52 Download gff for BS04276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 321..1195 13..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:15 Download gff for BS04276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 321..1195 13..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:15 Download gff for BS04276.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22872608..22873482 13..887 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:52 Download gff for BS04276.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22865708..22866582 13..887 99   Plus

BS04276.complete Sequence

1109 bp (1109 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634910

> BS04276.complete
GAAGTTATCAGTCGACATGTTGTGCATTGATCCGCTGGACTCACAGCTCA
CCAAAGCTGTGGCCGACTCCGAGCTCAAGGAGGTAGTGGTTGACACTAAC
TGCGGAGCTGCACTACTGCGAGGCGCCCACATATACGCCCCCGGTGTTTT
AGCTATGGAGTCAAACACTGAGCGGGAGGAACTCGTCAATGTCTACGCAG
ATCTGGATGGAAAATGCAAGCGCGGGACGGTCAAGCGGTACGAAAGCCCA
AATAAGGTTTTCCTGGGTACAGGCAAGGTGTTAATGCAGCGGTATCAGCT
GTTCAACAACGCGGAGAAGCCCGCCTCTGGAGTGGCCGTGGAAATGCAGT
CCAACGTCAGCGGAGTGCCCACGCTGGGGGATCTAAGCAGCGAAGACGGC
CTGTTGCAAAACCTGCCTTCTATTGTTTGCGTCCGTGTCCTGGATCCGCA
GCCCGGCGAGCGCATACTGGACATGTGTGCCGCTCCGGGTAACAAAACAA
GCCACATAGCCGAGTTGATGGGCGATCGGGGATCTGTGGTGGCCCTAGAC
AATTCGGCCAGTCGCGTCCGCAGCATGCTGCCCAAATTGGGACACTACAA
AAGCATAACGGCGCATGTTTTTAACTCCACCGAGGCAGTGGCAGCGGACG
CTCCATCTGCACCCGTGGGAGAATTCACTGGGCCTCCGTTTCCATGTGAA
AGCTTTGACCGAATCTTGCTCGATGCACCCTGCAGTGGGCTGGGCAACCG
GCCACAGTTGTCCTGCAGCATTAAACAGGTTAAGGTCTTGTCCTCATATC
CCCATATTCAGCGCCGGCTATTTGAACAGGCAGTGCAGCTCGTTCGTCCT
GGCGGCATCCTTGTATATAGCACGTGCACCGTCACCGAGGATGAGTGCGA
ATGTCTTGTGGCCTGGGCACTAAGAAAATTTGTCGAGCTGCGGCTAACAG
ATGCCACTCCCCGGTGGGGCGGTCCCGGACTTCCGCTTCCCGGTTTCGAG
GCATGTAAATCTCGTCTGTTGCAGCGCTTCGGTCCAAGCGGAGCAAATGC
GGACACTGTGGGCTTTTTTATTGCGAAGTTTCAGAAAATATAAAAGCTTT
CTAGACCAT

BS04276.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-RB 1320 CG11109-PB 240..1320 13..1093 5390 99.9 Plus
CG11109-RA 1077 CG11109-PA 1..1077 17..1093 5385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-RA 1445 CG11109-RA 351..1432 13..1094 5395 99.9 Plus
CG11109-RB 1415 CG11109-RB 321..1402 13..1094 5395 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22872608..22873689 13..1094 5395 99.9 Plus
Blast to na_te.dros performed on 2014-11-27 15:29:38 has no hits.

BS04276.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:30 Download gff for BS04276.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 240..1320 13..1093 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:54 Download gff for BS04276.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RA 351..1438 13..1099 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:13 Download gff for BS04276.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 330..1392 22..1084 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:30 Download gff for BS04276.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RA 351..1438 13..1099 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:11 Download gff for BS04276.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 330..1392 22..1084 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:11 Download gff for BS04276.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22872617..22873679 22..1084 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:13 Download gff for BS04276.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22865717..22866779 22..1084 100   Plus

BS04276.pep Sequence

Translation from 16 to 1092

> BS04276.pep
MLCIDPLDSQLTKAVADSELKEVVVDTNCGAALLRGAHIYAPGVLAMESN
TEREELVNVYADLDGKCKRGTVKRYESPNKVFLGTGKVLMQRYQLFNNAE
KPASGVAVEMQSNVSGVPTLGDLSSEDGLLQNLPSIVCVRVLDPQPGERI
LDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPKLGHYKSITAH
VFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCSGLGNRPQLSC
SIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAW
ALRKFVELRLTDATPRWGGPGLPLPGFEACKSRLLQRFGPSGANADTVGF
FIAKFQKI*

BS04276.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-PA 358 CG11109-PA 1..358 1..358 1859 100 Plus
CG11109-PB 439 CG11109-PB 82..439 1..358 1859 100 Plus
CG8545-PA 891 CG8545-PA 418..637 129..357 245 31.7 Plus