Clone Sequence Records
BS04280.3prime Sequence
941 bp (871 high quality bases) assembled on 2005-12-01
> BS04280.3prime
ATGGTCTAGAAAGCTTCTAGGTACCGGGCACCTTGCACAGGGTGGCATCA
ATCTTCTGCAGCTGCGGCAGTATGTCGCGCAGTTTGGAGCGGTAGCGAAC
ATCCTTGGCCAGCGGATTGTACTCCAGGTAGATGGTCTGCAGCGCCTTGT
TCACCTTCAACAGCTCAATGTCCTTCCAGTCATCGACTCCGTTGTGGTTC
AGCCACAGCTCCTCGAGCAGTTCCAGCTTTTCCAGATTGGCAATGCCCTT
CAACCGGTTCTTGGCCAAGTCGAGGGTCTCCAATTTGGTGTTCTCCGAGA
GGTTTTCAATGGTTTCCACTCCGTTTTCCGAAACGTAGAGTTCGCGGAGG
TTGGCAAGCTTTTCAAGGTTCTCGATTTTTACAATGCGATTGGCCTGTAG
ACTGAGTATCTCCAAATTGACCAATGTGTCCAAGTTCTCGATCTTTGCTA
TCTTATTTTTGCCCAGGAAGAGCTGTCGTAGATTCACGAGCATTTCGATG
TTTTCGATCTTCTTCAGTTTGTTATCCCCCAGCTCTAGCATGGTCAGATT
GGTGAGCATGTCCAGGTTCTCGATTTGGGTTATCCGGTTCGACACAAAGT
AGACCTTCTCCAGCTTGACCAGCTTGTCAAGGTTCTCTATCTTCGTCAGA
CGATTGAAGCTAATGTCCAGCACCTCCAGGTGGGGCAAGTCGTCCAAATT
CTCAATCTTGGTGATCTGGTTGTCATACAGCTCCAGCTCAATCAGTGTTT
TCAGGCTGGACAAGTTCTCGATTTTCTTGATCAGATTCCAGCGCAGAAAC
AGGCGCTCGATTCGAGTCAGCGGCTCGAAGTTCTCCAGCTTCTCGATCCG
GCGATGATTCAGATCAAGCTCGTACCAGTCCGGATCGATTGTGATTATAT
CCTCAATGGAAGCCACATCCTCGGCGGGATCACCTGGATCC
BS04280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5851-PA | 981 | sds22-RA | 69..981 | 929..17 | 4540 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sds22-RA | 1354 | CG5851-RA | 320..1244 | 939..16 | 4585 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17391986..17392910 | 939..16 | 4560 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:24:53 has no hits.
BS04280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:32 Download gff for
BS04280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-PA | 55..981 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:41 Download gff for
BS04280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5851-PA | 55..981 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:00:05 Download gff for
BS04280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 317..1244 | 16..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:49:11 Download gff for
BS04280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 317..1244 | 16..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:49:11 Download gff for
BS04280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17391983..17392910 | 16..941 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:00:05 Download gff for
BS04280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13217705..13218632 | 16..941 | 99 | | Minus |
BS04280.5prime Sequence
875 bp (756 high quality bases) assembled on 2005-11-29
> BS04280.5prime
GAAGTTATCAGTCGACATGGGCGATGCTGATCGTGCGATGAACGAACCAG
AAGCCGCGAAAACTGTGTCCGGAATCCAGGTGATTCCCGCCGAGGATGTG
GCTTCCATTGAGGATATAATCACAATCGATCCGGACTGCTACGAGCTTGA
TCTGAATCATCGCCGGATCGAGAAGCTGGAGAACTTCGAGCCGCTGACTC
GAATCGAGCGCCTGTTTCTGCGCTGGAATCTGATCAAGAAAATCGAGAAC
TTGTCCAGCCTGAAAACACTGATTGAGCTGGAGCTGTATGACAACCAGAT
CACCAAGATTGAGAATTTGGACGACTTGCCCCACCTGGAGGTGCTGGACA
TTAGCTTCAATCGTCTGACGAAGATAGAGAACCTTGACAAGCTGGTCAAG
CTGGAGAAGGTCTACTTTGTGTCGAACCGGATAACCCAAATCGAGAACCT
GGACATGCTCACCAATCTGACCATGCTAGAGCTGGGGGATAACAAACTGA
AGAAGATCGAAAACATCGAAATGCTCGTGAATCTACGACAGCTCTTCCTG
GGCAAAAATAAGATAGCAAAGATCGAGAACTTGGACACATTGGTCAATTT
GGAGATACTCAGTCTACAGGCCAATCGCATTGTAAAAATCGAGAACCTTG
AAAAGCTTGCCAACCTCCGCGAACTCTACGTTTCGGAAAACGGAGTGGAA
ACCATTGAAAACCTCTCGGAGAACACCAAATTGGAGACCCTCGACTTGGC
CAAGAACCGGTTGAAGGGCATTGCCAATCTGGAAAAGCTGGAACTGCTCG
AGGAGCTGTGGCTGAACCACAACGGAGTCGATGACTGGAAAGACATTGAG
CTGTTGAAGGTGAACAAGGCGCTGC
BS04280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5851-PA | 981 | sds22-RA | 1..859 | 17..875 | 4270 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sds22-RA | 1354 | CG5851-RA | 262..1121 | 16..875 | 4285 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17391928..17392787 | 16..875 | 4285 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:14:11 has no hits.
BS04280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:33 Download gff for
BS04280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:42 Download gff for
BS04280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5851-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:38 Download gff for
BS04280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 250..1121 | 2..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:16 Download gff for
BS04280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 250..1121 | 2..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:16 Download gff for
BS04280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17391916..17392787 | 2..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:38 Download gff for
BS04280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13217638..13218509 | 2..875 | 99 | | Plus |
BS04280.complete Sequence
1013 bp (1013 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634911
> BS04280.complete
GAAGTTATCAGTCGACATGGGCGATGCTGATCGTGCGATGAACGAACCAG
AAGCCGCGAAAACTGTGTCCGGAATCCAGGTGATTCCCGCCGAGGATGTG
GCTTCCATTGAGGATATAATCACAATCGATCCGGACTGCTACGAGCTTGA
TCTGAATCATCGCCGGATCGAGAAGCTGGAGAACTTCGAGCCGCTGACTC
GAATCGAGCGCCTGTTTCTGCGCTGGAATCTGATCAAGAAAATCGAGAAC
TTGTCCAGCCTGAAAACACTGATTGAGCTGGAGCTGTATGACAACCAGAT
CACCAAGATTGAGAATTTGGACGACTTGCCCCACCTGGAGGTGCTGGACA
TTAGCTTCAATCGTCTGACGAAGATAGAGAACCTTGACAAGCTGGTCAAG
CTGGAGAAGGTCTACTTTGTGTCGAACCGGATAACCCAAATCGAGAACCT
GGACATGCTCACCAATCTGACCATGCTAGAGCTGGGGGATAACAAACTGA
AGAAGATCGAAAACATCGAAATGCTCGTGAATCTACGACAGCTCTTCCTG
GGCAAAAATAAGATAGCAAAGATCGAGAACTTGGACACATTGGTCAATTT
GGAGATACTCAGTCTACAGGCCAATCGCATTGTAAAAATCGAGAACCTTG
AAAAGCTTGCCAACCTCCGCGAACTCTACGTTTCGGAAAACGGAGTGGAA
ACCATTGAAAACCTCTCGGAGAACACCAAATTGGAGACCCTCGACTTGGC
CAAGAACCGGTTGAAGGGCATTGCCAATCTGGAAAAGCTGGAACTGCTCG
AGGAGCTGTGGCTGAACCACAACGGAGTCGATGACTGGAAGGACATTGAG
CTGTTGAAGGTGAACAAGGCGCTGCAGACCATCTACCTGGAGTACAATCC
GCTGGCCAAGGATGTTCGCTACCGCTCCAAACTGCGCGACATACTGCCGC
AGCTGCAGAAGATTGATGCCACCCTGTGCAAGGTGCCCGGTACCTAGAAG
CTTTCTAGACCAT
BS04280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sds22-RA | 981 | CG5851-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sds22-RA | 1354 | CG5851-RA | 262..1244 | 16..998 | 4915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17391928..17392910 | 16..998 | 4915 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:45:18 has no hits.
BS04280.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:31 Download gff for
BS04280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 1..981 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:49 Download gff for
BS04280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 178..1172 | 2..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:55 Download gff for
BS04280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 263..1243 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:32 Download gff for
BS04280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 178..1172 | 2..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:23 Download gff for
BS04280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 263..1243 | 17..997 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:23 Download gff for
BS04280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17391929..17392909 | 17..997 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:55 Download gff for
BS04280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13217651..13218631 | 17..997 | 100 | | Plus |
BS04280.pep Sequence
Translation from 16 to 996
> BS04280.pep
MGDADRAMNEPEAAKTVSGIQVIPAEDVASIEDIITIDPDCYELDLNHRR
IEKLENFEPLTRIERLFLRWNLIKKIENLSSLKTLIELELYDNQITKIEN
LDDLPHLEVLDISFNRLTKIENLDKLVKLEKVYFVSNRITQIENLDMLTN
LTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIAKIENLDTLVNLEILSL
QANRIVKIENLEKLANLRELYVSENGVETIENLSENTKLETLDLAKNRLK
GIANLEKLELLEELWLNHNGVDDWKDIELLKVNKALQTIYLEYNPLAKDV
RYRSKLRDILPQLQKIDATLCKVPGT*
BS04280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sds22-PA | 326 | CG5851-PA | 1..326 | 1..326 | 1631 | 100 | Plus |
| TbCMF46-PA | 566 | CG13125-PA | 57..307 | 53..300 | 238 | 33.2 | Plus |
| Ppr-Y-PB | 569 | CG40440-PB | 49..272 | 53..265 | 235 | 33.5 | Plus |
| Cep97-PB | 806 | CG3980-PB | 13..191 | 88..264 | 223 | 33.5 | Plus |
| Ppr-Y-PB | 569 | CG40440-PB | 58..212 | 167..322 | 215 | 36.1 | Plus |
| Cep97-PB | 806 | CG3980-PB | 13..206 | 44..232 | 211 | 29.9 | Plus |
| Cep97-PB | 806 | CG3980-PB | 12..200 | 109..295 | 199 | 30.2 | Plus |
| Cep97-PB | 806 | CG3980-PB | 12..152 | 153..296 | 194 | 35.4 | Plus |
| CG18095-PC | 548 | CG18095-PC | 68..339 | 44..296 | 192 | 28.9 | Plus |
| Cep97-PB | 806 | CG3980-PB | 19..176 | 138..296 | 191 | 29.6 | Plus |
| Ppr-Y-PB | 569 | CG40440-PB | 75..199 | 33..154 | 161 | 32.8 | Plus |
| TbCMF46-PA | 566 | CG13125-PA | 83..176 | 33..126 | 158 | 38.3 | Plus |
