Clone BS04281 Report

Search the DGRC for BS04281

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG7768-RA
Protein status:BS04281.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04281.3prime Sequence

525 bp (524 high quality bases) assembled on 2005-12-01

> BS04281.3prime
ATGGTCTAGAAAGCTTTCAGAGGGCTCCGCAGTCTTCGATAATTACTTTC
TTGCTGGTCTTCCCATCTTGTGAACCGTAAGATTCTACCTTCTGGACGAT
ATCCATTCCCTCAACGACCTTGCCGAACACGACATGCTTATTATCCAGCC
ATGTGGTTTTCCCGGTGCAAATGAAAAACTGAGATCCATTGGTATTGGCC
CCAGCATTGGCCATCGAAAGTACACCAGCTCCGGTATGCTTTAGCTCGAA
ATTCTCATCGGGAAACTTGTTTCCATAAATGGAGCGTCCTCCAGTTCCGT
TTTGATTAGTGAAATCACCGCCCTGACACATGAAATTCGGGATGACGCGG
TGGAATGGTGATCCCTTGTAGCCGTACCCCTTCTCTCCGGTGCAGAGGGC
CCGGAAATTCTCCGCCGTCTTGGGCACCACATCCGAACGTAGTTCCATCA
CAATTCTACCTAACTTCTCACCTCCTGCGGCTATATCGAAGTAAACGCGT
GGCAACGACATGTCGACTGATAACT

BS04281.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7768-PB 495 CG7768-RB 1..495 511..17 2475 100 Minus
CG7768-PA 495 CG7768-RA 1..495 511..17 2475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7768-RB 679 CG7768-RB 88..583 511..16 2480 100 Minus
CG7768-RA 717 CG7768-RA 126..621 511..16 2480 100 Minus
Cyp1-RA 1227 CG9916-RA 287..687 448..48 745 79.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14218383..14218878 511..16 2480 100 Minus
X 23542271 X 16318213..16318598 48..433 730 79.3 Plus
Blast to na_te.dros performed on 2015-01-30 16:00:50 has no hits.

BS04281.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:34 Download gff for BS04281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-PB 1..495 17..511 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:43 Download gff for BS04281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-PA 1..495 17..511 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:19:44 Download gff for BS04281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-RA 115..632 4..521 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:17 Download gff for BS04281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-RA 116..633 4..521 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:17 Download gff for BS04281.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14218373..14218890 4..521 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:19:44 Download gff for BS04281.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14211473..14211990 4..521 98   Minus

BS04281.5prime Sequence

525 bp (524 high quality bases) assembled on 2005-11-29

> BS04281.5prime
GAAGTTATCAGTCGACATGTCGTTGCCACGCGTTTACTTCGATATAGCCG
CAGGAGGTGAGAAGTTAGGTAGAATTGTGATGGAACTACGTTCGGATGTG
GTGCCCAAGACGGCGGAGAATTTCCGGGCCCTCTGCACCGGAGAGAAGGG
GTACGGCTACAAGGGATCACCATTCCACCGCGTCATCCCGAATTTCATGT
GTCAGGGCGGTGATTTCACTAATCAAAACGGAACTGGAGGACGCTCCATT
TATGGAAACAAGTTTCCCGATGAGAATTTCGAGCTAAAGCATACCGGAGC
TGGTGTACTTTCGATGGCCAATGCTGGGGCCAATACCAATGGATCTCAGT
TTTTCATTTGCACCGGGAAAACCACATGGCTGGATAATAAGCATGTCGTG
TTCGGCAAGGTCGTTGAGGGAATGGATATCGTCCAGAAGGTAGAATCTTA
CGGTTCACAAGATGGGAAGACCAGCAAGAAAGTAATTATCGAAGACTGCG
GAGCCCTCTGAAAGCTTTCTAGACC

BS04281.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7768-PB 495 CG7768-RB 1..495 17..511 2475 100 Plus
CG7768-PA 495 CG7768-RA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7768-RB 679 CG7768-RB 88..583 17..512 2480 100 Plus
CG7768-RA 717 CG7768-RA 126..621 17..512 2480 100 Plus
Cyp1-RA 1227 CG9916-RA 287..687 80..480 745 79.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14218383..14218878 17..512 2480 100 Plus
X 23542271 X 16318213..16318598 480..95 730 79.3 Minus
Blast to na_te.dros performed on 2015-02-02 12:12:56 has no hits.

BS04281.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:35 Download gff for BS04281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-PB 1..495 17..511 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:44 Download gff for BS04281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-PA 1..495 17..511 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:20 Download gff for BS04281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-RA 115..632 7..524 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:53 Download gff for BS04281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-RA 116..633 7..524 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:53 Download gff for BS04281.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14218373..14218890 7..524 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:20 Download gff for BS04281.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14211473..14211990 7..524 98   Plus

BS04281.complete Sequence

527 bp (527 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634912

> BS04281.complete
GAAGTTATCAGTCGACATGTCGTTGCCACGCGTTTACTTCGATATAGCCG
CAGGAGGTGAGAAGTTAGGTAGAATTGTGATGGAACTACGTTCGGATGTG
GTGCCCAAGACGGCGGAGAATTTCCGGGCCCTCTGCACCGGAGAGAAGGG
GTACGGCTACAAGGGATCACCATTCCACCGCGTCATCCCGAATTTCATGT
GTCAGGGCGGTGATTTCACTAATCAAAACGGAACTGGAGGACGCTCCATT
TATGGAAACAAGTTTCCCGATGAGAATTTCGAGCTAAAGCATACCGGAGC
TGGTGTACTTTCGATGGCCAATGCTGGGGCCAATACCAATGGATCTCAGT
TTTTCATTTGCACCGGGAAAACCACATGGCTGGATAATAAGCATGTCGTG
TTCGGCAAGGTCGTTGAGGGAATGGATATCGTCCAGAAGGTAGAATCTTA
CGGTTCACAAGATGGGAAGACCAGCAAGAAAGTAATTATCGAAGACTGCG
GAGCCCTCTGAAAGCTTTCTAGACCAT

BS04281.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7768-RB 495 CG7768-PB 1..495 17..511 2475 100 Plus
CG7768-RA 495 CG7768-PA 1..495 17..511 2475 100 Plus
Cyp1-RA 684 CG9916-PA 253..653 80..480 745 79.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7768-RB 679 CG7768-RB 88..583 17..512 2480 100 Plus
CG7768-RA 717 CG7768-RA 126..621 17..512 2480 100 Plus
Cyp1-RA 1227 CG9916-RA 287..687 80..480 745 79.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14218383..14218878 17..512 2480 100 Plus
X 23542271 X 16318213..16318598 480..95 730 79.3 Minus
Blast to na_te.dros performed on 2014-11-28 01:21:51 has no hits.

BS04281.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:20 Download gff for BS04281.complete
Subject Subject Range Query Range Percent Splice Strand
CG7768-RA 1..495 17..511 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:21 Download gff for BS04281.complete
Subject Subject Range Query Range Percent Splice Strand
CG7768-RB 465..982 7..524 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:36 Download gff for BS04281.complete
Subject Subject Range Query Range Percent Splice Strand
CG7768-RA 125..618 17..510 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:03 Download gff for BS04281.complete
Subject Subject Range Query Range Percent Splice Strand
CG7768-RA 126..619 17..510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:03 Download gff for BS04281.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14218383..14218876 17..510 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:36 Download gff for BS04281.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14211483..14211976 17..510 100   Plus

BS04281.pep Sequence

Translation from 16 to 510

> BS04281.pep
MSLPRVYFDIAAGGEKLGRIVMELRSDVVPKTAENFRALCTGEKGYGYKG
SPFHRVIPNFMCQGGDFTNQNGTGGRSIYGNKFPDENFELKHTGAGVLSM
ANAGANTNGSQFFICTGKTTWLDNKHVVFGKVVEGMDIVQKVESYGSQDG
KTSKKVIIEDCGAL*

BS04281.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7768-PB 164 CG7768-PB 1..164 1..164 875 100 Plus
CG7768-PA 164 CG7768-PA 1..164 1..164 875 100 Plus
Cyp1-PA 227 CG9916-PA 65..227 2..164 752 83.4 Plus
cyp33-PA 300 CG4886-PA 139..299 4..164 625 70.8 Plus
CG2852-PD 205 CG2852-PD 30..190 5..164 480 57.1 Plus