Clone BS04282 Report

Search the DGRC for BS04282

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptRab11-RA
Protein status:BS04282.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04282.3prime Sequence

675 bp (674 high quality bases) assembled on 2005-12-01

> BS04282.3prime
ATGGTCTAGAAAGCTTTCACTGACAGCACTGTTTGCGCACATCGGCGGTG
ACAGTCGGCTTTACGTCGATGGGCTCCACGTTCGACGGGCGGATGACGTC
GCCTTCCGGCGGATCTCTGATTTGTTTCTGCGACACAATGCGATAGATCT
CTGTGAGTATGTTCTGGAATGCCGTTTCAACGTTCGTCGAGTCTAGGGCC
GAGGTTTCTATGAAACTCAAGCCGTTGCGCTCGGCAAACAGCTTCGCCTC
GTCCGTGGGCACGGAGCGCAAGTGCCGCAAGTCGGACTTGTTGCCCACCA
GCATGATGACGATGTTCTGGTCGGCATGGTCGCGCAATTCCCGCAGCCAC
CGCTCCACGTTCTCGTAGGTCAGATGCTTGGCAATGTCATAGACGAGCAG
GGCCCCCACGGCACCGCGGTAGTAGGCAGAGGTGATGGCGCGATAACGCT
CCTGGCCGGCCGTATCCCAGATTTGCGCTTTAATTGTTTTGCCATCGACC
TCTATGCTGCGCGTTGCAAACTCAACGCCAATCGTCGACTTGGACTCCAA
ATTGAATTCATTGCGCGTGAAACGTGAGAGCAAATTACTTTTGCCAACAC
CGGAGTCACCGATAAGGACAACTTTGAACAGATAATCGTACTCGTCTTCT
CTTGCACCCATGTCGACTGATAACT

BS04282.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5771-PB 645 Rab11-RB 1..645 661..17 3125 99.3 Minus
CG5771-PA 645 Rab11-RA 1..645 661..17 3125 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rab11-RA 1815 CG5771-RA 409..1053 661..17 3165 99.4 Minus
Rab11-RB 1627 CG5771-RB 221..865 661..17 3165 99.4 Minus
Rab8-RC 2043 CG8287-RC 751..843 476..384 180 79.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21114751..21115101 501..151 1725 99.4 Minus
3R 32079331 3R 21115248..21115384 153..17 670 99.3 Minus
3R 32079331 3R 21113944..21114069 623..498 615 99.2 Minus
3R 32079331 3R 21111816..21111855 661..622 200 100 Minus
Blast to na_te.dros performed on 2015-01-31 14:37:51 has no hits.

BS04282.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:36 Download gff for BS04282.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab11-PB 1..645 17..661 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:46 Download gff for BS04282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5771-PA 1..645 17..661 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:19:42 Download gff for BS04282.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab11-RB 215..869 13..668 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:24 Download gff for BS04282.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab11-RB 215..869 13..668 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:24 Download gff for BS04282.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21115251..21115388 13..150 97   Minus
3R 21111810..21111855 622..668 93 -> Minus
3R 21113946..21114067 500..621 99 -> Minus
3R 21114753..21115101 151..499 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:19:42 Download gff for BS04282.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16940973..16941110 13..150 97   Minus
arm_3R 16937532..16937577 622..668 93 -> Minus
arm_3R 16939668..16939789 500..621 99 -> Minus
arm_3R 16940475..16940823 151..499 99 -> Minus

BS04282.5prime Sequence

675 bp (674 high quality bases) assembled on 2005-11-29

> BS04282.5prime
GAAGTTATCAGTCGACATGGGTGCAAGAGAAGACGAGTACGATTATCTGT
TCAAAGTTGTCCTTATCGGTGACTCCGGTGTTGGCAAAAGTAATTTGCTC
TCACGTTTCACGCGCAATGAATTCAATTTGGAGTCCAAGTCGACGATTGG
CGTTGAGTTTGCAACGCGCAGCATAGAGGTCGATGGCAAAACAATTAAAG
CGCAAATCTGGGATACGGCCGGCCAGGAGCGTTATCGCGCCATCACCTCT
GCCTACTACCGCGGTGCCGTGGGGGCCCTGCTCGTCTATGACATTGCCAA
GCATCTGACCTACGAGAACGTGGAGCGGTGGCTGCGGGAATTGCGCGACC
ATGCCGACCAGAACATCGTCATCATGCTGGTGGGCAACAAGTCCGACTTG
CGGCACTTGCGCTCCGTGCCCACGGACGAGGCGAAGCTGTTTGCCGAGCG
CAACGGCTTGAGTTTCATAGAAACCTCGGCCCTAGACTCGACGAACGTTG
AAACGGCATTCCAGAACATACTCACAGAGATCTATCGCATTGTGTCGCAG
AAACAAATCAGAGATCCGCCGGAAGGCGACGTCATCCGCCCGTCGAACGT
GGAGCCCATCGACGTAAAGCCGACTGTCACCGCCGATGTGCGCAAACAGT
GCTGTCAGTGAAAGCTTTCTAGACC

BS04282.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5771-PB 645 Rab11-RB 1..645 17..661 3125 99.3 Plus
CG5771-PA 645 Rab11-RA 1..645 17..661 3125 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Rab11-RA 1815 CG5771-RA 409..1053 17..661 3165 99.4 Plus
Rab11-RB 1627 CG5771-RB 221..865 17..661 3165 99.4 Plus
Rab8-RC 2043 CG8287-RC 751..843 202..294 180 79.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21114751..21115101 177..527 1725 99.4 Plus
3R 32079331 3R 21115248..21115384 525..661 670 99.3 Plus
3R 32079331 3R 21113944..21114069 55..180 615 99.2 Plus
3R 32079331 3R 21111816..21111855 17..56 200 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:34:25 has no hits.

BS04282.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:38 Download gff for BS04282.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab11-PB 1..645 17..661 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:47 Download gff for BS04282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5771-PA 1..645 17..661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:53:54 Download gff for BS04282.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab11-RB 215..869 10..665 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:30:19 Download gff for BS04282.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab11-RB 215..869 10..665 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:30:19 Download gff for BS04282.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21115251..21115388 528..665 97   Plus
3R 21111810..21111855 10..56 93 -> Plus
3R 21113946..21114067 57..178 99 -> Plus
3R 21114753..21115101 179..527 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:53:54 Download gff for BS04282.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16940973..16941110 528..665 97   Plus
arm_3R 16937532..16937577 10..56 93 -> Plus
arm_3R 16939668..16939789 57..178 99 -> Plus
arm_3R 16940475..16940823 179..527 99 -> Plus

BS04282.complete Sequence

677 bp (677 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634913

> BS04282.complete
GAAGTTATCAGTCGACATGGGTGCAAGAGAAGACGAGTACGATTATCTGT
TCAAAGTTGTCCTTATCGGTGACTCCGGTGTTGGCAAAAGTAATTTGCTC
TCACGTTTCACGCGCAATGAATTCAATTTGGAGTCCAAGTCGACGATTGG
CGTTGAGTTTGCAACGCGCAGCATAGAGGTCGATGGCAAAACAATTAAAG
CGCAAATCTGGGATACGGCCGGCCAGGAGCGTTATCGCGCCATCACCTCT
GCCTACTACCGCGGTGCCGTGGGGGCCCTGCTCGTCTATGACATTGCCAA
GCATCTGACCTACGAGAACGTGGAGCGGTGGCTGCGGGAATTGCGCGACC
ATGCCGACCAGAACATCGTCATCATGCTGGTGGGCAACAAGTCCGACTTG
CGGCACTTGCGCTCCGTGCCCACGGACGAGGCGAAGCTGTTTGCCGAGCG
CAACGGCTTGAGTTTCATAGAAACCTCGGCCCTAGACTCGACGAACGTTG
AAACGGCATTCCAGAACATACTCACAGAGATCTATCGCATTGTGTCGCAG
AAACAAATCAGAGATCCGCCGGAAGGCGACGTCATCCGCCCGTCGAACGT
GGAGCCCATCGACGTAAAGCCGACTGTCACCGCCGATGTGCGCAAACAGT
GCTGTCAGTGAAAGCTTTCTAGACCAT

BS04282.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
Rab11-RA 645 CG5771-PA 1..645 17..661 3165 99.4 Plus
Rab11-RB 645 CG5771-PB 1..645 17..661 3165 99.4 Plus
Rab8-RC 624 CG8287-PC 177..269 202..294 180 79.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
Rab11-RA 1815 CG5771-RA 409..1053 17..661 3165 99.4 Plus
Rab11-RB 1627 CG5771-RB 221..865 17..661 3165 99.4 Plus
Rab8-RC 2043 CG8287-RC 751..843 202..294 180 79.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21114751..21115101 177..527 1725 99.4 Plus
3R 32079331 3R 21115248..21115384 525..661 670 99.3 Plus
3R 32079331 3R 21113944..21114069 55..180 615 99.2 Plus
3R 32079331 3R 21111816..21111855 17..56 200 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:27:42 has no hits.

BS04282.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:33 Download gff for BS04282.complete
Subject Subject Range Query Range Percent Splice Strand
Rab11-RA 1..645 17..661 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:51 Download gff for BS04282.complete
Subject Subject Range Query Range Percent Splice Strand
Rab11-RA 404..1058 10..665 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:45 Download gff for BS04282.complete
Subject Subject Range Query Range Percent Splice Strand
Rab11-RB 221..864 17..660 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:33 Download gff for BS04282.complete
Subject Subject Range Query Range Percent Splice Strand
Rab11-RA 404..1058 10..665 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:07 Download gff for BS04282.complete
Subject Subject Range Query Range Percent Splice Strand
Rab11-RB 221..864 17..660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:07 Download gff for BS04282.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21111816..21111855 17..56 100 -> Plus
3R 21113946..21114067 57..178 99 -> Plus
3R 21114753..21115101 179..527 99 -> Plus
3R 21115251..21115383 528..660 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:45 Download gff for BS04282.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16937538..16937577 17..56 100 -> Plus
arm_3R 16939668..16939789 57..178 99 -> Plus
arm_3R 16940475..16940823 179..527 99 -> Plus
arm_3R 16940973..16941105 528..660 99   Plus

BS04282.pep Sequence

Translation from 16 to 660

> BS04282.pep
MGAREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT
RSIEVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYE
NVERWLRELRDHADQNIVIMLVGNKSDLRHLRSVPTDEAKLFAERNGLSF
IETSALDSTNVETAFQNILTEIYRIVSQKQIRDPPEGDVIRPSNVEPIDV
KPTVTADVRKQCCQ*

BS04282.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Rab11-PA 214 CG5771-PA 1..214 1..214 1091 100 Plus
Rab11-PB 214 CG5771-PB 1..214 1..214 1091 100 Plus
Rab14-PD 215 CG4212-PD 1..181 1..181 478 51.9 Plus
Rab14-PA 215 CG4212-PA 1..181 1..181 478 51.9 Plus
Rab14-PB 239 CG4212-PB 25..205 1..181 478 51.9 Plus