Clone Sequence Records
BS04282.3prime Sequence
675 bp (674 high quality bases) assembled on 2005-12-01
> BS04282.3prime
ATGGTCTAGAAAGCTTTCACTGACAGCACTGTTTGCGCACATCGGCGGTG
ACAGTCGGCTTTACGTCGATGGGCTCCACGTTCGACGGGCGGATGACGTC
GCCTTCCGGCGGATCTCTGATTTGTTTCTGCGACACAATGCGATAGATCT
CTGTGAGTATGTTCTGGAATGCCGTTTCAACGTTCGTCGAGTCTAGGGCC
GAGGTTTCTATGAAACTCAAGCCGTTGCGCTCGGCAAACAGCTTCGCCTC
GTCCGTGGGCACGGAGCGCAAGTGCCGCAAGTCGGACTTGTTGCCCACCA
GCATGATGACGATGTTCTGGTCGGCATGGTCGCGCAATTCCCGCAGCCAC
CGCTCCACGTTCTCGTAGGTCAGATGCTTGGCAATGTCATAGACGAGCAG
GGCCCCCACGGCACCGCGGTAGTAGGCAGAGGTGATGGCGCGATAACGCT
CCTGGCCGGCCGTATCCCAGATTTGCGCTTTAATTGTTTTGCCATCGACC
TCTATGCTGCGCGTTGCAAACTCAACGCCAATCGTCGACTTGGACTCCAA
ATTGAATTCATTGCGCGTGAAACGTGAGAGCAAATTACTTTTGCCAACAC
CGGAGTCACCGATAAGGACAACTTTGAACAGATAATCGTACTCGTCTTCT
CTTGCACCCATGTCGACTGATAACT
BS04282.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5771-PB | 645 | Rab11-RB | 1..645 | 661..17 | 3125 | 99.3 | Minus |
CG5771-PA | 645 | Rab11-RA | 1..645 | 661..17 | 3125 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab11-RA | 1815 | CG5771-RA | 409..1053 | 661..17 | 3165 | 99.4 | Minus |
Rab11-RB | 1627 | CG5771-RB | 221..865 | 661..17 | 3165 | 99.4 | Minus |
Rab8-RC | 2043 | CG8287-RC | 751..843 | 476..384 | 180 | 79.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21114751..21115101 | 501..151 | 1725 | 99.4 | Minus |
3R | 32079331 | 3R | 21115248..21115384 | 153..17 | 670 | 99.3 | Minus |
3R | 32079331 | 3R | 21113944..21114069 | 623..498 | 615 | 99.2 | Minus |
3R | 32079331 | 3R | 21111816..21111855 | 661..622 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:37:51 has no hits.
BS04282.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:36 Download gff for
BS04282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-PB | 1..645 | 17..661 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:46 Download gff for
BS04282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5771-PA | 1..645 | 17..661 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:19:42 Download gff for
BS04282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RB | 215..869 | 13..668 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:24 Download gff for
BS04282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RB | 215..869 | 13..668 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:24 Download gff for
BS04282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21115251..21115388 | 13..150 | 97 | | Minus |
3R | 21111810..21111855 | 622..668 | 93 | -> | Minus |
3R | 21113946..21114067 | 500..621 | 99 | -> | Minus |
3R | 21114753..21115101 | 151..499 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:19:42 Download gff for
BS04282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16940973..16941110 | 13..150 | 97 | | Minus |
arm_3R | 16937532..16937577 | 622..668 | 93 | -> | Minus |
arm_3R | 16939668..16939789 | 500..621 | 99 | -> | Minus |
arm_3R | 16940475..16940823 | 151..499 | 99 | -> | Minus |
BS04282.5prime Sequence
675 bp (674 high quality bases) assembled on 2005-11-29
> BS04282.5prime
GAAGTTATCAGTCGACATGGGTGCAAGAGAAGACGAGTACGATTATCTGT
TCAAAGTTGTCCTTATCGGTGACTCCGGTGTTGGCAAAAGTAATTTGCTC
TCACGTTTCACGCGCAATGAATTCAATTTGGAGTCCAAGTCGACGATTGG
CGTTGAGTTTGCAACGCGCAGCATAGAGGTCGATGGCAAAACAATTAAAG
CGCAAATCTGGGATACGGCCGGCCAGGAGCGTTATCGCGCCATCACCTCT
GCCTACTACCGCGGTGCCGTGGGGGCCCTGCTCGTCTATGACATTGCCAA
GCATCTGACCTACGAGAACGTGGAGCGGTGGCTGCGGGAATTGCGCGACC
ATGCCGACCAGAACATCGTCATCATGCTGGTGGGCAACAAGTCCGACTTG
CGGCACTTGCGCTCCGTGCCCACGGACGAGGCGAAGCTGTTTGCCGAGCG
CAACGGCTTGAGTTTCATAGAAACCTCGGCCCTAGACTCGACGAACGTTG
AAACGGCATTCCAGAACATACTCACAGAGATCTATCGCATTGTGTCGCAG
AAACAAATCAGAGATCCGCCGGAAGGCGACGTCATCCGCCCGTCGAACGT
GGAGCCCATCGACGTAAAGCCGACTGTCACCGCCGATGTGCGCAAACAGT
GCTGTCAGTGAAAGCTTTCTAGACC
BS04282.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5771-PB | 645 | Rab11-RB | 1..645 | 17..661 | 3125 | 99.3 | Plus |
CG5771-PA | 645 | Rab11-RA | 1..645 | 17..661 | 3125 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab11-RA | 1815 | CG5771-RA | 409..1053 | 17..661 | 3165 | 99.4 | Plus |
Rab11-RB | 1627 | CG5771-RB | 221..865 | 17..661 | 3165 | 99.4 | Plus |
Rab8-RC | 2043 | CG8287-RC | 751..843 | 202..294 | 180 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21114751..21115101 | 177..527 | 1725 | 99.4 | Plus |
3R | 32079331 | 3R | 21115248..21115384 | 525..661 | 670 | 99.3 | Plus |
3R | 32079331 | 3R | 21113944..21114069 | 55..180 | 615 | 99.2 | Plus |
3R | 32079331 | 3R | 21111816..21111855 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:34:25 has no hits.
BS04282.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:38 Download gff for
BS04282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-PB | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:47 Download gff for
BS04282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5771-PA | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:53:54 Download gff for
BS04282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RB | 215..869 | 10..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:30:19 Download gff for
BS04282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RB | 215..869 | 10..665 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:30:19 Download gff for
BS04282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21115251..21115388 | 528..665 | 97 | | Plus |
3R | 21111810..21111855 | 10..56 | 93 | -> | Plus |
3R | 21113946..21114067 | 57..178 | 99 | -> | Plus |
3R | 21114753..21115101 | 179..527 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:53:54 Download gff for
BS04282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16940973..16941110 | 528..665 | 97 | | Plus |
arm_3R | 16937532..16937577 | 10..56 | 93 | -> | Plus |
arm_3R | 16939668..16939789 | 57..178 | 99 | -> | Plus |
arm_3R | 16940475..16940823 | 179..527 | 99 | -> | Plus |
BS04282.complete Sequence
677 bp (677 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634913
> BS04282.complete
GAAGTTATCAGTCGACATGGGTGCAAGAGAAGACGAGTACGATTATCTGT
TCAAAGTTGTCCTTATCGGTGACTCCGGTGTTGGCAAAAGTAATTTGCTC
TCACGTTTCACGCGCAATGAATTCAATTTGGAGTCCAAGTCGACGATTGG
CGTTGAGTTTGCAACGCGCAGCATAGAGGTCGATGGCAAAACAATTAAAG
CGCAAATCTGGGATACGGCCGGCCAGGAGCGTTATCGCGCCATCACCTCT
GCCTACTACCGCGGTGCCGTGGGGGCCCTGCTCGTCTATGACATTGCCAA
GCATCTGACCTACGAGAACGTGGAGCGGTGGCTGCGGGAATTGCGCGACC
ATGCCGACCAGAACATCGTCATCATGCTGGTGGGCAACAAGTCCGACTTG
CGGCACTTGCGCTCCGTGCCCACGGACGAGGCGAAGCTGTTTGCCGAGCG
CAACGGCTTGAGTTTCATAGAAACCTCGGCCCTAGACTCGACGAACGTTG
AAACGGCATTCCAGAACATACTCACAGAGATCTATCGCATTGTGTCGCAG
AAACAAATCAGAGATCCGCCGGAAGGCGACGTCATCCGCCCGTCGAACGT
GGAGCCCATCGACGTAAAGCCGACTGTCACCGCCGATGTGCGCAAACAGT
GCTGTCAGTGAAAGCTTTCTAGACCAT
BS04282.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab11-RA | 645 | CG5771-PA | 1..645 | 17..661 | 3165 | 99.4 | Plus |
Rab11-RB | 645 | CG5771-PB | 1..645 | 17..661 | 3165 | 99.4 | Plus |
Rab8-RC | 624 | CG8287-PC | 177..269 | 202..294 | 180 | 79.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab11-RA | 1815 | CG5771-RA | 409..1053 | 17..661 | 3165 | 99.4 | Plus |
Rab11-RB | 1627 | CG5771-RB | 221..865 | 17..661 | 3165 | 99.4 | Plus |
Rab8-RC | 2043 | CG8287-RC | 751..843 | 202..294 | 180 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21114751..21115101 | 177..527 | 1725 | 99.4 | Plus |
3R | 32079331 | 3R | 21115248..21115384 | 525..661 | 670 | 99.3 | Plus |
3R | 32079331 | 3R | 21113944..21114069 | 55..180 | 615 | 99.2 | Plus |
3R | 32079331 | 3R | 21111816..21111855 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:27:42 has no hits.
BS04282.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:33 Download gff for
BS04282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RA | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:51 Download gff for
BS04282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RA | 404..1058 | 10..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:45 Download gff for
BS04282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RB | 221..864 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:33 Download gff for
BS04282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RA | 404..1058 | 10..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:07 Download gff for
BS04282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RB | 221..864 | 17..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:07 Download gff for
BS04282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21111816..21111855 | 17..56 | 100 | -> | Plus |
3R | 21113946..21114067 | 57..178 | 99 | -> | Plus |
3R | 21114753..21115101 | 179..527 | 99 | -> | Plus |
3R | 21115251..21115383 | 528..660 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:45 Download gff for
BS04282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16937538..16937577 | 17..56 | 100 | -> | Plus |
arm_3R | 16939668..16939789 | 57..178 | 99 | -> | Plus |
arm_3R | 16940475..16940823 | 179..527 | 99 | -> | Plus |
arm_3R | 16940973..16941105 | 528..660 | 99 | | Plus |
BS04282.pep Sequence
Translation from 16 to 660
> BS04282.pep
MGAREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT
RSIEVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYE
NVERWLRELRDHADQNIVIMLVGNKSDLRHLRSVPTDEAKLFAERNGLSF
IETSALDSTNVETAFQNILTEIYRIVSQKQIRDPPEGDVIRPSNVEPIDV
KPTVTADVRKQCCQ*
BS04282.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab11-PA | 214 | CG5771-PA | 1..214 | 1..214 | 1091 | 100 | Plus |
Rab11-PB | 214 | CG5771-PB | 1..214 | 1..214 | 1091 | 100 | Plus |
Rab14-PD | 215 | CG4212-PD | 1..181 | 1..181 | 478 | 51.9 | Plus |
Rab14-PA | 215 | CG4212-PA | 1..181 | 1..181 | 478 | 51.9 | Plus |
Rab14-PB | 239 | CG4212-PB | 25..205 | 1..181 | 478 | 51.9 | Plus |