Clone Sequence Records
BS04283.3prime Sequence
939 bp (792 high quality bases) assembled on 2005-12-01
> BS04283.3prime
ATGGTCTAGAAAGCTTTTAGTACTTAATAATGGATCGGATACTCTCGCCC
TTGTGCATCAGATCGAATGCCTCGTTGATCTGCGACAGCGGCAGCTCGTG
GGTGATGAACTCGTCCACCAGCAGATCCTTCTTCAGGTAGTCCTCCACCA
ATTTGGGAACATCGGAAACGGAGCGCCAGCCTCCGAAGGCGGAACCCTTC
CACACGCGACCCACGACCAGCTGGAAGGGTCGCGTGGAAATCTCCTGTCC
AGCACCGGCCACTCCGATCACCACCGAAGTGCCCCAACCCTTGTGTGTGG
CCTCCAAAGCGGAGCGCATGGTGTTCACATTGCCAATGCATTCGAAGGTG
TAATCGAATCCACCATCGGTCAGATCGATCAGGTAGTTCTGGATCGAACC
CTTGTCGGCCACATCCTTGGGGTTGACAAAGTCGGTGAATCCAAACTTCT
TGGCCAGCTCAAACTTGTCGGGATTGATGTCAATGCCGTAGATCTTGCCG
GCACCAGCCTTCTTGCAGCCCAAACCCACGGCCAAGCCCACAGCTCCCAA
GCCCCAAACAGCGCAGGTGCTACCGGCTTCCACCTTGGCAGTGTTGAGGG
CGGCTCCGTAGCCTGTGGAAATGCCGCACCCCAGCAGGCAGACTTTCTCC
AGCGGCGCCTTTTCGTTGATCTTTGTCAGCGAAATGTCGGCCACCACGGT
GTACTCTGCGAAGGTGGAGGTGCCCATGAAGTGGAACAACTGCTGTCCCT
TGCAGCTGAGACGGGAGGTGCCCTCGGGCATGACTCCAGCGCCCTGGGTA
AGTCGGATCTTTTGGCAGAGATTCGTCTTGCCGCTCTTGCAGAACTTGCA
CTCGTTGCACTGGGGGATGTAGAGAGCGATGACATGGTCGCCAGCCTTGG
AGTTGGTCACGCCCTCGCCGACGCTCTCCACGATTGCGG
BS04283.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6598-PA | 1140 | Fdh-RA | 223..1140 | 934..17 | 4540 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fdh-RA | 1337 | CG6598-RA | 329..1246 | 934..17 | 4560 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10870997..10871914 | 17..934 | 4560 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:37:26 has no hits.
BS04283.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:39 Download gff for
BS04283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-PA | 218..1140 | 17..939 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:49 Download gff for
BS04283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6598-PA | 218..1140 | 17..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:19:37 Download gff for
BS04283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 324..1248 | 13..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:21 Download gff for
BS04283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 324..1248 | 13..939 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:21 Download gff for
BS04283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10870995..10871918 | 13..939 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:19:37 Download gff for
BS04283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6696717..6697640 | 13..939 | 99 | | Plus |
BS04283.5prime Sequence
897 bp (760 high quality bases) assembled on 2005-12-01
> BS04283.5prime
GAAGTTATCAGTCGACATGTCTGCTACCGAGGGCAAGGTTATCACATGCA
AGGCCGCCGTCGCTTGGGAGGCAAAGAAGCCGCTGGTCATCGAGGATATC
GAGGTGGCGCCGCCCAAGGCTCATGAGGTGCGCATCAAGATCACGGCCAC
GGGCGTCTGCCACACGGATGCCTTCACCCTGAGCGGTGCCGATCCGGAGG
GCCTGTTCCCAGTGGTGTTGGGACATGAGGGCGCCGGCATCGTGGAGAGC
GTCGGCGAGGGCGTGACCAACTTCAAGGCTGGCGACCATGTCATCGCTCT
CTACATCCCCCAGTGCAACGAGTGCAAGTTCTGCAAGAGCGGCAAGACGA
ATCTCTGCCAAAAGATCCGACTTACCCAGGGCGCTGGAGTCATGCCCGAG
GGCACCTCCCGTCTCAGCTGCAAGGGACAGCAGTTGTTCCACTTCATGGG
CACCTCCACCTTCGCAGAGTACACCGTGGTGGCCGACATTTCGCTGACAA
AGATCAACGAAAAGGCGCCGCTGGAGAAAGTCTGCCTGCTGGGGTGCGGC
ATTTCCACAGGCTACGGAGCCGCCCTCAACACTGCCAAGGTGGAAGCCGG
TAGCACCTGCGCTGTTTGGGGCTTGGGAGCTGTGGGCTTGGCCGTGGGTT
TGGGCTGCAAGAAGGCTGGTGCCGGCAAGATCTACGGCATTGACATCAAT
CCCGACAAGTTTGAGCTGGCCAAGAAGTTTGGATTCACCGACTTTGTCAA
CCCCAAGGATGTGGCCGACAAGGGTTCGATCCAGAACTACCTGATCGATC
TGACCGATGGTGGATTCGATTACACCTTCGAATGCATTGGCAATGTGAAC
ACCATGCGCTCCGCTTTGGAGGCACACACAAGGGTTGGGGCACTTCG
BS04283.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6598-PA | 1140 | Fdh-RA | 1..857 | 17..873 | 4235 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fdh-RA | 1337 | CG6598-RA | 107..988 | 17..897 | 4355 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10871255..10872027 | 897..126 | 3800 | 99.7 | Minus |
3R | 32079331 | 3R | 10872094..10872187 | 129..36 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:23:09 has no hits.
BS04283.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:40 Download gff for
BS04283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-PA | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:50 Download gff for
BS04283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6598-PA | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:48:58 Download gff for
BS04283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 107..988 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:23 Download gff for
BS04283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 107..988 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:23 Download gff for
BS04283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10871255..10872025 | 128..897 | 99 | <- | Minus |
3R | 10872096..10872185 | 38..127 | 98 | <- | Minus |
3R | 10872255..10872275 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:48:58 Download gff for
BS04283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6696977..6697747 | 128..897 | 99 | <- | Minus |
arm_3R | 6697818..6697907 | 38..127 | 98 | <- | Minus |
arm_3R | 6697977..6697997 | 17..37 | 100 | | Minus |
BS04283.complete Sequence
1172 bp assembled on 2008-08-14
GenBank Submission: FJ634914
> BS04283.complete
GAAGTTATCAGTCGACATGTCTGCTACCGAGGGCAAGGTTATCACATGCA
AGGCCGCCGTCGCTTGGGAGGCAAAGAAGCCGCTGGTCATCGAGGATATC
GAGGTGGCGCCGCCCAAGGCTCATGAGGTGCGCATCAAGATCACGGCCAC
GGGCGTCTGCCACACGGATGCCTTCACCCTGAGCGGTGCCGATCCGGAGG
GCCTGTTCCCAGTGGTGTTGGGACATGAGGGCGCCGGCATCGTGGAGAGC
GTCGGCGAGGGCGTGACCAACTTCAAGGCTGGCGACCATGTCATCGCTCT
CTACATCCCCCAGTGCAACGAGTGCAAGTTCTGCAAGAGCGGCAAGACGA
ATCTCTGCCAAAAGATCCGACTTACCCAGGGCGCTGGAGTCATGCCCGAG
GGCACCTCCCGTCTCAGCTGCAAGGGACAGCAGTTGTTCCACTTCATGGG
CACCTCCACCTTCGCAGAGTACACCGTGGTGGCCGACATTTCGCTGACAA
AGATCAACGAAAAGGCGCCGCTGGAGAAAGTCTGCCTGCTGGGGTGCGGC
ATTTCCACAGGCTACGGAGCCGCCCTCAACACTGCCAAGGTGGAAGCCGG
TAGCACCTGCGCTGTTTGGGGCTTGGGAGCTGTGGGCTTGGCCGTGGGTT
TGGGCTGCAAGAAGGCTGGTGCCGGCAAGATCTACGGCATTGACATCAAT
CCCGACAAGTTTGAGCTGGCCAAGAAGTTTGGATTCACCGACTTTGTCAA
CCCCAAGGATGTGGCCGACAAGGGTTCGATCCAGAACTACCTGATCGATC
TGACCGATGGTGGATTCGATTACACCTTCGAATGCATTGGCAATGTGAAC
ACCATGCGCTCCGCTTTGGAGGCCACACACAAGGGTTGGGGCACTTCGGT
GGTGATCGGAGTGGCCGGTGCTGGACAGGAGATTTCCACGCGACCCTTCC
AGCTGGTCGTGGGTCGCGTGTGGAAGGGTTCCGCCTTCGGAGGCTGGCGC
TCCGTTTCCGATGTTCCCAAATTGGTGGAGGACTACCTGAAGAAGGATCT
GCTGGTGGACGAGTTCATCACCCACGAGCTGCCGCTGTCGCAGATCAACG
AGGCATTCGATCTGATGCACAAGGGCGAGAGTATCCGATCCATTATTAAG
TACTAAAAGCTTTCTAGACCAT
BS04283.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fdh-RA | 1140 | CG6598-PA | 1..1140 | 17..1156 | 5670 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fdh-RA | 1337 | CG6598-RA | 107..1246 | 17..1156 | 5670 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10870997..10872027 | 1156..126 | 5140 | 99.9 | Minus |
3R | 32079331 | 3R | 10872094..10872187 | 129..36 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:50:56 has no hits.
BS04283.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:18 Download gff for
BS04283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 106..1247 | 17..1160 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:16 Download gff for
BS04283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 107..1244 | 17..1154 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:41 Download gff for
BS04283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 106..1243 | 17..1154 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:48 Download gff for
BS04283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 107..1244 | 17..1154 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:48 Download gff for
BS04283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10870999..10872025 | 128..1154 | 99 | <- | Minus |
3R | 10872096..10872185 | 38..127 | 98 | <- | Minus |
3R | 10872255..10872275 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:16 Download gff for
BS04283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6696721..6697747 | 128..1154 | 99 | <- | Minus |
arm_3R | 6697818..6697907 | 38..127 | 98 | <- | Minus |
arm_3R | 6697977..6697997 | 17..37 | 100 | | Minus |
BS04283.pep Sequence
Translation from 16 to 1155
> BS04283.pep
MSATEGKVITCKAAVAWEAKKPLVIEDIEVAPPKAHEVRIKITATGVCHT
DAFTLSGADPEGLFPVVLGHEGAGIVESVGEGVTNFKAGDHVIALYIPQC
NECKFCKSGKTNLCQKIRLTQGAGVMPEGTSRLSCKGQQLFHFMGTSTFA
EYTVVADISLTKINEKAPLEKVCLLGCGISTGYGAALNTAKVEAGSTCAV
WGLGAVGLAVGLGCKKAGAGKIYGIDINPDKFELAKKFGFTDFVNPKDVA
DKGSIQNYLIDLTDGGFDYTFECIGNVNTMRSALEATHKGWGTSVVIGVA
GAGQEISTRPFQLVVGRVWKGSAFGGWRSVSDVPKLVEDYLKKDLLVDEF
ITHELPLSQINEAFDLMHKGESIRSIIKY*
BS04283.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fdh-PA | 379 | CG6598-PA | 1..379 | 1..379 | 1988 | 100 | Plus |