Clone BS04283 Report

Search the DGRC for BS04283

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptFdh-RA
Protein status:BS04283.pep: full length peptide match
Sequenced Size:1172

Clone Sequence Records

BS04283.3prime Sequence

939 bp (792 high quality bases) assembled on 2005-12-01

> BS04283.3prime
ATGGTCTAGAAAGCTTTTAGTACTTAATAATGGATCGGATACTCTCGCCC
TTGTGCATCAGATCGAATGCCTCGTTGATCTGCGACAGCGGCAGCTCGTG
GGTGATGAACTCGTCCACCAGCAGATCCTTCTTCAGGTAGTCCTCCACCA
ATTTGGGAACATCGGAAACGGAGCGCCAGCCTCCGAAGGCGGAACCCTTC
CACACGCGACCCACGACCAGCTGGAAGGGTCGCGTGGAAATCTCCTGTCC
AGCACCGGCCACTCCGATCACCACCGAAGTGCCCCAACCCTTGTGTGTGG
CCTCCAAAGCGGAGCGCATGGTGTTCACATTGCCAATGCATTCGAAGGTG
TAATCGAATCCACCATCGGTCAGATCGATCAGGTAGTTCTGGATCGAACC
CTTGTCGGCCACATCCTTGGGGTTGACAAAGTCGGTGAATCCAAACTTCT
TGGCCAGCTCAAACTTGTCGGGATTGATGTCAATGCCGTAGATCTTGCCG
GCACCAGCCTTCTTGCAGCCCAAACCCACGGCCAAGCCCACAGCTCCCAA
GCCCCAAACAGCGCAGGTGCTACCGGCTTCCACCTTGGCAGTGTTGAGGG
CGGCTCCGTAGCCTGTGGAAATGCCGCACCCCAGCAGGCAGACTTTCTCC
AGCGGCGCCTTTTCGTTGATCTTTGTCAGCGAAATGTCGGCCACCACGGT
GTACTCTGCGAAGGTGGAGGTGCCCATGAAGTGGAACAACTGCTGTCCCT
TGCAGCTGAGACGGGAGGTGCCCTCGGGCATGACTCCAGCGCCCTGGGTA
AGTCGGATCTTTTGGCAGAGATTCGTCTTGCCGCTCTTGCAGAACTTGCA
CTCGTTGCACTGGGGGATGTAGAGAGCGATGACATGGTCGCCAGCCTTGG
AGTTGGTCACGCCCTCGCCGACGCTCTCCACGATTGCGG

BS04283.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6598-PA 1140 Fdh-RA 223..1140 934..17 4540 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
Fdh-RA 1337 CG6598-RA 329..1246 934..17 4560 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10870997..10871914 17..934 4560 99.8 Plus
Blast to na_te.dros performed on 2015-01-31 14:37:26 has no hits.

BS04283.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:39 Download gff for BS04283.3prime
Subject Subject Range Query Range Percent Splice Strand
Fdh-PA 218..1140 17..939 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:49 Download gff for BS04283.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6598-PA 218..1140 17..939 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:19:37 Download gff for BS04283.3prime
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 324..1248 13..939 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:21 Download gff for BS04283.3prime
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 324..1248 13..939 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:21 Download gff for BS04283.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10870995..10871918 13..939 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:19:37 Download gff for BS04283.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6696717..6697640 13..939 99   Plus

BS04283.5prime Sequence

897 bp (760 high quality bases) assembled on 2005-12-01

> BS04283.5prime
GAAGTTATCAGTCGACATGTCTGCTACCGAGGGCAAGGTTATCACATGCA
AGGCCGCCGTCGCTTGGGAGGCAAAGAAGCCGCTGGTCATCGAGGATATC
GAGGTGGCGCCGCCCAAGGCTCATGAGGTGCGCATCAAGATCACGGCCAC
GGGCGTCTGCCACACGGATGCCTTCACCCTGAGCGGTGCCGATCCGGAGG
GCCTGTTCCCAGTGGTGTTGGGACATGAGGGCGCCGGCATCGTGGAGAGC
GTCGGCGAGGGCGTGACCAACTTCAAGGCTGGCGACCATGTCATCGCTCT
CTACATCCCCCAGTGCAACGAGTGCAAGTTCTGCAAGAGCGGCAAGACGA
ATCTCTGCCAAAAGATCCGACTTACCCAGGGCGCTGGAGTCATGCCCGAG
GGCACCTCCCGTCTCAGCTGCAAGGGACAGCAGTTGTTCCACTTCATGGG
CACCTCCACCTTCGCAGAGTACACCGTGGTGGCCGACATTTCGCTGACAA
AGATCAACGAAAAGGCGCCGCTGGAGAAAGTCTGCCTGCTGGGGTGCGGC
ATTTCCACAGGCTACGGAGCCGCCCTCAACACTGCCAAGGTGGAAGCCGG
TAGCACCTGCGCTGTTTGGGGCTTGGGAGCTGTGGGCTTGGCCGTGGGTT
TGGGCTGCAAGAAGGCTGGTGCCGGCAAGATCTACGGCATTGACATCAAT
CCCGACAAGTTTGAGCTGGCCAAGAAGTTTGGATTCACCGACTTTGTCAA
CCCCAAGGATGTGGCCGACAAGGGTTCGATCCAGAACTACCTGATCGATC
TGACCGATGGTGGATTCGATTACACCTTCGAATGCATTGGCAATGTGAAC
ACCATGCGCTCCGCTTTGGAGGCACACACAAGGGTTGGGGCACTTCG

BS04283.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6598-PA 1140 Fdh-RA 1..857 17..873 4235 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Fdh-RA 1337 CG6598-RA 107..988 17..897 4355 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10871255..10872027 897..126 3800 99.7 Minus
3R 32079331 3R 10872094..10872187 129..36 455 98.9 Minus
Blast to na_te.dros performed on 2015-02-02 12:23:09 has no hits.

BS04283.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:40 Download gff for BS04283.5prime
Subject Subject Range Query Range Percent Splice Strand
Fdh-PA 1..882 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:50 Download gff for BS04283.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6598-PA 1..882 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:48:58 Download gff for BS04283.5prime
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 107..988 17..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:23 Download gff for BS04283.5prime
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 107..988 17..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:23 Download gff for BS04283.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10871255..10872025 128..897 99 <- Minus
3R 10872096..10872185 38..127 98 <- Minus
3R 10872255..10872275 17..37 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:48:58 Download gff for BS04283.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6696977..6697747 128..897 99 <- Minus
arm_3R 6697818..6697907 38..127 98 <- Minus
arm_3R 6697977..6697997 17..37 100   Minus

BS04283.complete Sequence

1172 bp assembled on 2008-08-14

GenBank Submission: FJ634914

> BS04283.complete
GAAGTTATCAGTCGACATGTCTGCTACCGAGGGCAAGGTTATCACATGCA
AGGCCGCCGTCGCTTGGGAGGCAAAGAAGCCGCTGGTCATCGAGGATATC
GAGGTGGCGCCGCCCAAGGCTCATGAGGTGCGCATCAAGATCACGGCCAC
GGGCGTCTGCCACACGGATGCCTTCACCCTGAGCGGTGCCGATCCGGAGG
GCCTGTTCCCAGTGGTGTTGGGACATGAGGGCGCCGGCATCGTGGAGAGC
GTCGGCGAGGGCGTGACCAACTTCAAGGCTGGCGACCATGTCATCGCTCT
CTACATCCCCCAGTGCAACGAGTGCAAGTTCTGCAAGAGCGGCAAGACGA
ATCTCTGCCAAAAGATCCGACTTACCCAGGGCGCTGGAGTCATGCCCGAG
GGCACCTCCCGTCTCAGCTGCAAGGGACAGCAGTTGTTCCACTTCATGGG
CACCTCCACCTTCGCAGAGTACACCGTGGTGGCCGACATTTCGCTGACAA
AGATCAACGAAAAGGCGCCGCTGGAGAAAGTCTGCCTGCTGGGGTGCGGC
ATTTCCACAGGCTACGGAGCCGCCCTCAACACTGCCAAGGTGGAAGCCGG
TAGCACCTGCGCTGTTTGGGGCTTGGGAGCTGTGGGCTTGGCCGTGGGTT
TGGGCTGCAAGAAGGCTGGTGCCGGCAAGATCTACGGCATTGACATCAAT
CCCGACAAGTTTGAGCTGGCCAAGAAGTTTGGATTCACCGACTTTGTCAA
CCCCAAGGATGTGGCCGACAAGGGTTCGATCCAGAACTACCTGATCGATC
TGACCGATGGTGGATTCGATTACACCTTCGAATGCATTGGCAATGTGAAC
ACCATGCGCTCCGCTTTGGAGGCCACACACAAGGGTTGGGGCACTTCGGT
GGTGATCGGAGTGGCCGGTGCTGGACAGGAGATTTCCACGCGACCCTTCC
AGCTGGTCGTGGGTCGCGTGTGGAAGGGTTCCGCCTTCGGAGGCTGGCGC
TCCGTTTCCGATGTTCCCAAATTGGTGGAGGACTACCTGAAGAAGGATCT
GCTGGTGGACGAGTTCATCACCCACGAGCTGCCGCTGTCGCAGATCAACG
AGGCATTCGATCTGATGCACAAGGGCGAGAGTATCCGATCCATTATTAAG
TACTAAAAGCTTTCTAGACCAT

BS04283.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Fdh-RA 1140 CG6598-PA 1..1140 17..1156 5670 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Fdh-RA 1337 CG6598-RA 107..1246 17..1156 5670 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10870997..10872027 1156..126 5140 99.9 Minus
3R 32079331 3R 10872094..10872187 129..36 455 98.9 Minus
Blast to na_te.dros performed on 2014-11-26 16:50:56 has no hits.

BS04283.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:18 Download gff for BS04283.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 106..1247 17..1160 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:16 Download gff for BS04283.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 107..1244 17..1154 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:41 Download gff for BS04283.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 106..1243 17..1154 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:48 Download gff for BS04283.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 107..1244 17..1154 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:48 Download gff for BS04283.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10870999..10872025 128..1154 99 <- Minus
3R 10872096..10872185 38..127 98 <- Minus
3R 10872255..10872275 17..37 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:16 Download gff for BS04283.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6696721..6697747 128..1154 99 <- Minus
arm_3R 6697818..6697907 38..127 98 <- Minus
arm_3R 6697977..6697997 17..37 100   Minus

BS04283.pep Sequence

Translation from 16 to 1155

> BS04283.pep
MSATEGKVITCKAAVAWEAKKPLVIEDIEVAPPKAHEVRIKITATGVCHT
DAFTLSGADPEGLFPVVLGHEGAGIVESVGEGVTNFKAGDHVIALYIPQC
NECKFCKSGKTNLCQKIRLTQGAGVMPEGTSRLSCKGQQLFHFMGTSTFA
EYTVVADISLTKINEKAPLEKVCLLGCGISTGYGAALNTAKVEAGSTCAV
WGLGAVGLAVGLGCKKAGAGKIYGIDINPDKFELAKKFGFTDFVNPKDVA
DKGSIQNYLIDLTDGGFDYTFECIGNVNTMRSALEATHKGWGTSVVIGVA
GAGQEISTRPFQLVVGRVWKGSAFGGWRSVSDVPKLVEDYLKKDLLVDEF
ITHELPLSQINEAFDLMHKGESIRSIIKY*

BS04283.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
Fdh-PA 379 CG6598-PA 1..379 1..379 1988 100 Plus