Clone BS04287 Report

Search the DGRC for BS04287

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG7889-RA
Protein status:BS04287.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04287.3prime Sequence

914 bp (720 high quality bases) assembled on 2005-12-01

> BS04287.3prime
ATGGTCTAGAAAGCTTCTAGCGTCTTATGGAGATAATCTGGACGGCGGCG
GTGTGATCGCGACAAAAGTGGCTGGCACAGGCCGATACGTTCGCACATGG
AGTCACCTTGTAGCCACTGTCACCCAGCTGGGTCATGAACTTGTGCAGCG
TGTCCACATTCCGCACCGTGCTGGCCAGCAGGGTTTCCAGTCCACCTCCG
CGTCGGGAGTACAAATAGTCCATGGCACCCAGCAGTGCATCGAACTGGGA
ATCATCGTAGATCACATCGGCGGCTATCAAAAGATCCGTTTTAGCATGCG
AATCCCAGGGGAACTCACTGACCGCAGCCCAGTTTAGCTGCTCCGCCTGG
GGCATCTGCTCCTTGGGCGTGTCTGGAAAATTCAGGCTGATATTCTCGCG
CATTAGCTGGACGCAGGGTTCACTGCCATCGGTCAGCAGGACCTGGCCCA
CTTGCAGCTGCAGGGCCGGTAGTTTCAGCATGATTCCCAGCAGCCCGGCA
CCGGCTCCCAACTCCACTATGTTCTTGCCACGCACCAGGTCGCGGTGCTG
CAGGAGGTAATCGCCGAGGGCCAGAGCCGCTTCCCAGGTGCACAATCCCG
TTGTGCCCTCGGCCACGAAGCTGGTGGACTCACGGAGCGTGATGTGGGCG
CCCGGTTCGAGGAGATAATGTTTGTAGGCGTACGTGGATGACCCTGTGCT
CGCTTCGTTCTCCGCCACCGGACCGCACAAGCTGCTGTATATATCGTCGT
GCAGATCTTCCTGATCTCCGAGCAGGAGTAGCAGGTGCTTGAGGAAGGCC
TCCAGGTAGCTGCGACGCACAGGATAGCACTGGTTCATCGGGTGGCCACA
GGTGGCCGCTAACAGCTCCTGCTGATCCTCCCAGCTGAGGGGCAGCGTGA
CCGACGACCAGGCC

BS04287.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7889-PA 960 CG7889-RA 63..960 914..17 4490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7889-RA 1468 CG7889-RA 172..1069 914..17 4490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19243876..19244661 905..120 3930 100 Minus
X 23542271 X 19244718..19244825 124..17 540 100 Minus
Blast to na_te.dros performed on 2015-02-09 03:05:09 has no hits.

BS04287.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:41 Download gff for BS04287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-PA 63..960 17..914 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:51 Download gff for BS04287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-PA 63..960 17..914 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:26 Download gff for BS04287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 172..1072 10..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:54 Download gff for BS04287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 172..1072 10..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:54 Download gff for BS04287.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19243876..19244657 124..905 100 -> Minus
X 19244719..19244828 10..123 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:26 Download gff for BS04287.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19137909..19138690 124..905 100 -> Minus
arm_X 19138752..19138861 10..123 96   Minus

BS04287.5prime Sequence

822 bp (794 high quality bases) assembled on 2005-11-29

> BS04287.5prime
GAAGTTATCAGTCGACATGTCCAGAAAGTACGGCAAGCTGCAGCAGCAGT
TCCTCTGTTGCTATCCGGTGAACAAGATGGCCTGGTCGTCGGTCACGCTG
CCCCTCAGCTGGGAGGATCAGCAGGAGCTGTTAGCGGCCACCTGTGGCCA
CCCGATGAACCAGTGCTATCCTGTGCGTCGCAGCTACCTGGAGGCCTTCC
TCAAGCACCTGCTACTCCTGCTCGGAGATCAGGAAGATCTGCACGACGAT
ATATACAGCAGCTTGTGCGGTCCGGTGGCGGAGAACGAAGCGAGCACAGG
GTCATCCACGTACGCCTACAAACATTATCTCCTCGAACCGGGCGCCCACA
TCACGCTCCGTGAGTCCACCAGCTTCGTGGCCGAGGGCACAACGGGATTG
TGCACCTGGGAAGCGGCTCTGGCCCTCGGCGATTACCTCCTGCAGCACCG
CGACCTGGTGCGTGGCAAGAACATAGTGGAGTTGGGAGCCGGTGCCGGGC
TGCTGGGAATCATGCTGAAACTACCGGCCCTGCAGCTGCAAGTGGGCCAG
GTCCTGCTGACCGATGGCAGTGAACCCTGCGTCCAGCTAATGCGCGAGAA
TATCAGCCTGAATTTTCCAGACACGCCCAAGGAGCAGATGCCCCAGGCGG
AGCAGCTAAACTGGGCTGCGGTCAGTGAGTTCCCCTGGGATTCGCATGCT
AAAACGGATCTTTTGATAGCCGCCGATGTGATCTACGATGATTCCCAGTT
CGATGCACTGCTGGGTGCCATGGACTATTTGTACTCCCGACGCGGAGGTG
GACTGGAAACCCTGCTGGCCAG

BS04287.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7889-PA 960 CG7889-RA 1..806 17..822 4030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7889-RA 1468 CG7889-RA 110..915 17..822 4030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19243876..19244610 88..822 3675 100 Plus
X 23542271 X 19243740..19243811 17..88 360 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:49:58 has no hits.

BS04287.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:42 Download gff for BS04287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-PA 1..806 17..822 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:53 Download gff for BS04287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-PA 1..806 17..822 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:54:35 Download gff for BS04287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 110..915 17..822 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:08:40 Download gff for BS04287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 110..915 17..822 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:08:40 Download gff for BS04287.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19243740..19243811 17..88 100 -> Plus
X 19243877..19244610 89..822 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:54:35 Download gff for BS04287.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19137773..19137844 17..88 100 -> Plus
arm_X 19137910..19138643 89..822 100   Plus

BS04287.complete Sequence

992 bp (992 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634915

> BS04287.complete
GAAGTTATCAGTCGACATGTCCAGAAAGTACGGCAAGCTGCAGCAGCAGT
TCCTCTGTTGCTATCCGGTGAACAAGATGGCCTGGTCGTCGGTCACGCTG
CCCCTCAGCTGGGAGGATCAGCAGGAGCTGTTAGCGGCCACCTGTGGCCA
CCCGATGAACCAGTGCTATCCTGTGCGTCGCAGCTACCTGGAGGCCTTCC
TCAAGCACCTGCTACTCCTGCTCGGAGATCAGGAAGATCTGCACGACGAT
ATATACAGCAGCTTGTGCGGTCCGGTGGCGGAGAACGAAGCGAGCACAGG
GTCATCCACGTACGCCTACAAACATTATCTCCTCGAACCGGGCGCCCACA
TCACGCTCCGTGAGTCCACCAGCTTCGTGGCCGAGGGCACAACGGGATTG
TGCACCTGGGAAGCGGCTCTGGCCCTCGGCGATTACCTCCTGCAGCACCG
CGACCTGGTGCGTGGCAAGAACATAGTGGAGTTGGGAGCCGGTGCCGGGC
TGCTGGGAATCATGCTGAAACTACCGGCCCTGCAGCTGCAAGTGGGCCAG
GTCCTGCTGACCGATGGCAGTGAACCCTGCGTCCAGCTAATGCGCGAGAA
TATCAGCCTGAATTTTCCAGACACGCCCAAGGAGCAGATGCCCCAGGCGG
AGCAGCTAAACTGGGCTGCGGTCAGTGAGTTCCCCTGGGATTCGCATGCT
AAAACGGATCTTTTGATAGCCGCCGATGTGATCTACGATGATTCCCAGTT
CGATGCACTGCTGGGTGCCATGGACTATTTGTACTCCCGACGCGGAGGTG
GACTGGAAACCCTGCTGGCCAGCACGGTGCGGAATGTGGACACGCTGCAC
AAGTTCATGACCCAGCTGGGTGACAGTGGCTACAAGGTGACTCCATGTGC
GAACGTATCGGCCTGTGCCAGCCACTTTTGTCGCGATCACACCGCCGCCG
TCCAGATTATCTCCATAAGACGCTAGAAGCTTTCTAGACCAT

BS04287.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7889-RA 960 CG7889-PA 1..960 17..976 4800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7889-RA 1468 CG7889-RA 110..1069 17..976 4800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19243876..19244661 88..873 3930 100 Plus
X 23542271 X 19244718..19244825 869..976 540 100 Plus
X 23542271 X 19243740..19243811 17..88 360 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:44:31 has no hits.

BS04287.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:34 Download gff for BS04287.complete
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 1..960 17..976 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:52 Download gff for BS04287.complete
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 108..1070 17..983 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:20 Download gff for BS04287.complete
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 110..1069 17..976 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:34 Download gff for BS04287.complete
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 108..1070 17..983 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:38 Download gff for BS04287.complete
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 110..1069 17..976 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:38 Download gff for BS04287.complete
Subject Subject Range Query Range Percent Splice Strand
X 19243877..19244657 89..869 100 -> Plus
X 19244719..19244825 870..976 100   Plus
X 19243740..19243811 17..88 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:20 Download gff for BS04287.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19137773..19137844 17..88 100 -> Plus
arm_X 19137910..19138690 89..869 100 -> Plus
arm_X 19138752..19138858 870..976 100   Plus

BS04287.pep Sequence

Translation from 16 to 975

> BS04287.pep
MSRKYGKLQQQFLCCYPVNKMAWSSVTLPLSWEDQQELLAATCGHPMNQC
YPVRRSYLEAFLKHLLLLLGDQEDLHDDIYSSLCGPVAENEASTGSSTYA
YKHYLLEPGAHITLRESTSFVAEGTTGLCTWEAALALGDYLLQHRDLVRG
KNIVELGAGAGLLGIMLKLPALQLQVGQVLLTDGSEPCVQLMRENISLNF
PDTPKEQMPQAEQLNWAAVSEFPWDSHAKTDLLIAADVIYDDSQFDALLG
AMDYLYSRRGGGLETLLASTVRNVDTLHKFMTQLGDSGYKVTPCANVSAC
ASHFCRDHTAAVQIISIRR*

BS04287.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7889-PA 319 CG7889-PA 1..319 1..319 1680 100 Plus