Clone Sequence Records
BS04287.3prime Sequence
914 bp (720 high quality bases) assembled on 2005-12-01
> BS04287.3prime
ATGGTCTAGAAAGCTTCTAGCGTCTTATGGAGATAATCTGGACGGCGGCG
GTGTGATCGCGACAAAAGTGGCTGGCACAGGCCGATACGTTCGCACATGG
AGTCACCTTGTAGCCACTGTCACCCAGCTGGGTCATGAACTTGTGCAGCG
TGTCCACATTCCGCACCGTGCTGGCCAGCAGGGTTTCCAGTCCACCTCCG
CGTCGGGAGTACAAATAGTCCATGGCACCCAGCAGTGCATCGAACTGGGA
ATCATCGTAGATCACATCGGCGGCTATCAAAAGATCCGTTTTAGCATGCG
AATCCCAGGGGAACTCACTGACCGCAGCCCAGTTTAGCTGCTCCGCCTGG
GGCATCTGCTCCTTGGGCGTGTCTGGAAAATTCAGGCTGATATTCTCGCG
CATTAGCTGGACGCAGGGTTCACTGCCATCGGTCAGCAGGACCTGGCCCA
CTTGCAGCTGCAGGGCCGGTAGTTTCAGCATGATTCCCAGCAGCCCGGCA
CCGGCTCCCAACTCCACTATGTTCTTGCCACGCACCAGGTCGCGGTGCTG
CAGGAGGTAATCGCCGAGGGCCAGAGCCGCTTCCCAGGTGCACAATCCCG
TTGTGCCCTCGGCCACGAAGCTGGTGGACTCACGGAGCGTGATGTGGGCG
CCCGGTTCGAGGAGATAATGTTTGTAGGCGTACGTGGATGACCCTGTGCT
CGCTTCGTTCTCCGCCACCGGACCGCACAAGCTGCTGTATATATCGTCGT
GCAGATCTTCCTGATCTCCGAGCAGGAGTAGCAGGTGCTTGAGGAAGGCC
TCCAGGTAGCTGCGACGCACAGGATAGCACTGGTTCATCGGGTGGCCACA
GGTGGCCGCTAACAGCTCCTGCTGATCCTCCCAGCTGAGGGGCAGCGTGA
CCGACGACCAGGCC
BS04287.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7889-PA | 960 | CG7889-RA | 63..960 | 914..17 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7889-RA | 1468 | CG7889-RA | 172..1069 | 914..17 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19243876..19244661 | 905..120 | 3930 | 100 | Minus |
X | 23542271 | X | 19244718..19244825 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:05:09 has no hits.
BS04287.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:41 Download gff for
BS04287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-PA | 63..960 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:51 Download gff for
BS04287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-PA | 63..960 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:26 Download gff for
BS04287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 172..1072 | 10..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:54 Download gff for
BS04287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 172..1072 | 10..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:54 Download gff for
BS04287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19243876..19244657 | 124..905 | 100 | -> | Minus |
X | 19244719..19244828 | 10..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:26 Download gff for
BS04287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19137909..19138690 | 124..905 | 100 | -> | Minus |
arm_X | 19138752..19138861 | 10..123 | 96 | | Minus |
BS04287.5prime Sequence
822 bp (794 high quality bases) assembled on 2005-11-29
> BS04287.5prime
GAAGTTATCAGTCGACATGTCCAGAAAGTACGGCAAGCTGCAGCAGCAGT
TCCTCTGTTGCTATCCGGTGAACAAGATGGCCTGGTCGTCGGTCACGCTG
CCCCTCAGCTGGGAGGATCAGCAGGAGCTGTTAGCGGCCACCTGTGGCCA
CCCGATGAACCAGTGCTATCCTGTGCGTCGCAGCTACCTGGAGGCCTTCC
TCAAGCACCTGCTACTCCTGCTCGGAGATCAGGAAGATCTGCACGACGAT
ATATACAGCAGCTTGTGCGGTCCGGTGGCGGAGAACGAAGCGAGCACAGG
GTCATCCACGTACGCCTACAAACATTATCTCCTCGAACCGGGCGCCCACA
TCACGCTCCGTGAGTCCACCAGCTTCGTGGCCGAGGGCACAACGGGATTG
TGCACCTGGGAAGCGGCTCTGGCCCTCGGCGATTACCTCCTGCAGCACCG
CGACCTGGTGCGTGGCAAGAACATAGTGGAGTTGGGAGCCGGTGCCGGGC
TGCTGGGAATCATGCTGAAACTACCGGCCCTGCAGCTGCAAGTGGGCCAG
GTCCTGCTGACCGATGGCAGTGAACCCTGCGTCCAGCTAATGCGCGAGAA
TATCAGCCTGAATTTTCCAGACACGCCCAAGGAGCAGATGCCCCAGGCGG
AGCAGCTAAACTGGGCTGCGGTCAGTGAGTTCCCCTGGGATTCGCATGCT
AAAACGGATCTTTTGATAGCCGCCGATGTGATCTACGATGATTCCCAGTT
CGATGCACTGCTGGGTGCCATGGACTATTTGTACTCCCGACGCGGAGGTG
GACTGGAAACCCTGCTGGCCAG
BS04287.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7889-PA | 960 | CG7889-RA | 1..806 | 17..822 | 4030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7889-RA | 1468 | CG7889-RA | 110..915 | 17..822 | 4030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19243876..19244610 | 88..822 | 3675 | 100 | Plus |
X | 23542271 | X | 19243740..19243811 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:49:58 has no hits.
BS04287.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:42 Download gff for
BS04287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-PA | 1..806 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:53 Download gff for
BS04287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-PA | 1..806 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:54:35 Download gff for
BS04287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 110..915 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:08:40 Download gff for
BS04287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 110..915 | 17..822 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:08:40 Download gff for
BS04287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19243740..19243811 | 17..88 | 100 | -> | Plus |
X | 19243877..19244610 | 89..822 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:54:35 Download gff for
BS04287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19137773..19137844 | 17..88 | 100 | -> | Plus |
arm_X | 19137910..19138643 | 89..822 | 100 | | Plus |
BS04287.complete Sequence
992 bp (992 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634915
> BS04287.complete
GAAGTTATCAGTCGACATGTCCAGAAAGTACGGCAAGCTGCAGCAGCAGT
TCCTCTGTTGCTATCCGGTGAACAAGATGGCCTGGTCGTCGGTCACGCTG
CCCCTCAGCTGGGAGGATCAGCAGGAGCTGTTAGCGGCCACCTGTGGCCA
CCCGATGAACCAGTGCTATCCTGTGCGTCGCAGCTACCTGGAGGCCTTCC
TCAAGCACCTGCTACTCCTGCTCGGAGATCAGGAAGATCTGCACGACGAT
ATATACAGCAGCTTGTGCGGTCCGGTGGCGGAGAACGAAGCGAGCACAGG
GTCATCCACGTACGCCTACAAACATTATCTCCTCGAACCGGGCGCCCACA
TCACGCTCCGTGAGTCCACCAGCTTCGTGGCCGAGGGCACAACGGGATTG
TGCACCTGGGAAGCGGCTCTGGCCCTCGGCGATTACCTCCTGCAGCACCG
CGACCTGGTGCGTGGCAAGAACATAGTGGAGTTGGGAGCCGGTGCCGGGC
TGCTGGGAATCATGCTGAAACTACCGGCCCTGCAGCTGCAAGTGGGCCAG
GTCCTGCTGACCGATGGCAGTGAACCCTGCGTCCAGCTAATGCGCGAGAA
TATCAGCCTGAATTTTCCAGACACGCCCAAGGAGCAGATGCCCCAGGCGG
AGCAGCTAAACTGGGCTGCGGTCAGTGAGTTCCCCTGGGATTCGCATGCT
AAAACGGATCTTTTGATAGCCGCCGATGTGATCTACGATGATTCCCAGTT
CGATGCACTGCTGGGTGCCATGGACTATTTGTACTCCCGACGCGGAGGTG
GACTGGAAACCCTGCTGGCCAGCACGGTGCGGAATGTGGACACGCTGCAC
AAGTTCATGACCCAGCTGGGTGACAGTGGCTACAAGGTGACTCCATGTGC
GAACGTATCGGCCTGTGCCAGCCACTTTTGTCGCGATCACACCGCCGCCG
TCCAGATTATCTCCATAAGACGCTAGAAGCTTTCTAGACCAT
BS04287.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7889-RA | 960 | CG7889-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7889-RA | 1468 | CG7889-RA | 110..1069 | 17..976 | 4800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19243876..19244661 | 88..873 | 3930 | 100 | Plus |
X | 23542271 | X | 19244718..19244825 | 869..976 | 540 | 100 | Plus |
X | 23542271 | X | 19243740..19243811 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:44:31 has no hits.
BS04287.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:34 Download gff for
BS04287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 1..960 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:52 Download gff for
BS04287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 108..1070 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:20 Download gff for
BS04287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 110..1069 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:34 Download gff for
BS04287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 108..1070 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:38 Download gff for
BS04287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 110..1069 | 17..976 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:38 Download gff for
BS04287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19243877..19244657 | 89..869 | 100 | -> | Plus |
X | 19244719..19244825 | 870..976 | 100 | | Plus |
X | 19243740..19243811 | 17..88 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:20 Download gff for
BS04287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19137773..19137844 | 17..88 | 100 | -> | Plus |
arm_X | 19137910..19138690 | 89..869 | 100 | -> | Plus |
arm_X | 19138752..19138858 | 870..976 | 100 | | Plus |
BS04287.pep Sequence
Translation from 16 to 975
> BS04287.pep
MSRKYGKLQQQFLCCYPVNKMAWSSVTLPLSWEDQQELLAATCGHPMNQC
YPVRRSYLEAFLKHLLLLLGDQEDLHDDIYSSLCGPVAENEASTGSSTYA
YKHYLLEPGAHITLRESTSFVAEGTTGLCTWEAALALGDYLLQHRDLVRG
KNIVELGAGAGLLGIMLKLPALQLQVGQVLLTDGSEPCVQLMRENISLNF
PDTPKEQMPQAEQLNWAAVSEFPWDSHAKTDLLIAADVIYDDSQFDALLG
AMDYLYSRRGGGLETLLASTVRNVDTLHKFMTQLGDSGYKVTPCANVSAC
ASHFCRDHTAAVQIISIRR*
BS04287.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7889-PA | 319 | CG7889-PA | 1..319 | 1..319 | 1680 | 100 | Plus |