Clone BS04288 Report

Search the DGRC for BS04288

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG1764-RA
Protein status:BS04288.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04288.3prime Sequence

837 bp (835 high quality bases) assembled on 2005-12-01

> BS04288.3prime
ATGGTCTAGAAAGCTTTCACAAGCTCCGTATGGACTTCCAGCGTCGCAGC
AACAAACACGACGAGGTCAGACCACTGGAATATTGGCTAAATTCACTTAT
ATTTATGTTGCGTGTTGGAATGTCGATTTTCTCTTTTAAAGTCTTGTAGG
CTTCTGGAATTTCCGTTGGGGATCTGTGCACGATCGTTCCATTGATGTAC
AGCATATTGGCCGCACTCTCCTCGGGCAGAGTCAACTTCTGGTAGGTGCA
GATGGCCTCGCGCTCCATCCGCTTGACGATCTCCTGGCAGGTGGGGCTAC
TGCTCACACACAGCACTTCCGGCCCCGCCATGGTCACATAGTACTTCAGC
CTCTTGGTGCCGTTGACCCGAATCGGCGTCACTGGATATTCGGGATAGGC
CATGGCCACCGCCCGGGCTCCCTCCTCATTGGTGAAACTGGAGATGCCAA
CGAAGAATTCGCGACCCGTGAAAAGCACATCGCCACCATCGAGCTGAGCG
TTCGGATCCTCGATCTCGATGACCGGAATGTCCAGCTCCTTTTTGAGAAT
AATGGCCATGCTCTCGGCCTCGAGTTGCCGCTTGGGATGCTCCGATCTTC
CGATCAGGGCCACTCCGTTACAGATCACCGCACTGTTCTCGACAAATACG
CCCTCGGGCAGCTGGTCATCCGGCGGCAGCTCGATCACATCGAGACCAAT
GGTCCTCAGGAGGGTGCAGTACTGCTCGTGCTGCTGCTTGGCCAGCTGTA
CGTCGAACTTTCCGTTCTCCAGCAGGGCATCCGAGATTCTGGCCACAATC
GCATGTGTGTACTTGGGCGACATGTCGACTGATAACT

BS04288.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1764-PA 807 CG1764-RA 1..807 823..17 4010 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1764-RA 1395 CG1764-RA 104..912 824..16 4030 99.9 Minus
CG1764-RB 1780 CG1764-RB 475..1283 824..16 4030 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13295687..13296013 464..790 1635 100 Plus
X 23542271 X 13295158..13295383 143..368 1130 100 Plus
X 23542271 X 13294970..13295098 16..144 630 99.2 Plus
X 23542271 X 13295525..13295625 366..466 505 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:48:05 has no hits.

BS04288.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:42 Download gff for BS04288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1764-PA 1..807 17..823 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:55 Download gff for BS04288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1764-PA 1..807 17..823 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:11 Download gff for BS04288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1764-RB 465..1290 8..833 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:17 Download gff for BS04288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1764-RB 465..1290 8..833 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:17 Download gff for BS04288.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13295158..13295382 143..367 100 <- Plus
X 13295527..13295624 368..465 100 <- Plus
X 13295689..13296011 466..788 100 <- Plus
X 13296513..13296558 789..833 93   Plus
X 13294963..13295096 8..142 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:11 Download gff for BS04288.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13188996..13189129 8..142 97 <- Plus
arm_X 13189191..13189415 143..367 100 <- Plus
arm_X 13189560..13189657 368..465 100 <- Plus
arm_X 13189722..13190044 466..788 100 <- Plus
arm_X 13190546..13190591 789..833 93   Plus

BS04288.5prime Sequence

837 bp (836 high quality bases) assembled on 2005-11-29

> BS04288.5prime
GAAGTTATCAGTCGACATGTCGCCCAAGTACACACATGCGATTGTGGCCA
GAATCTCGGATGCCCTGCTGGAGAACGGAAAGTTCGACGTACAGCTGGCC
AAGCAGCAGCACGAGCAGTACTGCACCCTCCTGAGGACCATTGGTCTCGA
TGTGATCGAGCTGCCGCCGGATGACCAGCTGCCCGAGGGCGTATTTGTCG
AGAACAGTGCGGTGATCTGTAACGGAGTGGCCCTGATCGGAAGATCGGAG
CATCCCAAGCGGCAACTCGAGGCCGAGAGCATGGCCATTATTCTCAAAAA
GGAGCTGGACATTCCGGTCATCGAGATCGAGGATCCGAACGCTCAGCTCG
ATGGTGGCGATGTGCTTTTCACGGGTCGCGAATTCTTCGTTGGCATCTCC
AGTTTCACCAATGAGGAGGGAGCCCGGGCGGTGGCCATGGCCTATCCCGA
ATATCCAGTGACGCCGATTCGGGTCAACGGCACCAAGAGGCTGAAGTACT
ATGTGACCATGGCGGGGCCGGAAGTGCTGTGTGTGAGCAGTAGCCCCACC
TGCCAGGAGATCGTCAAGCGGATGGAGCGCGAGGCCATCTGCACCTACCA
GAAGTTGACTCTGCCCGAGGAGAGTGCGGCCAATATGCTGTACATCAATG
GAACGATCGTGCACAGATCCCCAACGGAAATTCCAGAAGCCTACAAGACT
TTAAAAGAGAAAATCGACATTCCAACACGCAACATAAATATAAGTGAATT
TAGCCAATATTCCAGTGGTCTGACCTCGTCGTGTTTGTTGCTGCGACGCT
GGAAGTCCATACGGAGCTTGTGAAAGCTTTCTAGACC

BS04288.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1764-PA 807 CG1764-RA 1..807 17..823 4010 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1764-RA 1395 CG1764-RA 104..912 16..824 4030 99.9 Plus
CG1764-RB 1780 CG1764-RB 475..1283 16..824 4030 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13295687..13296013 376..50 1635 100 Minus
X 23542271 X 13295158..13295383 697..472 1130 100 Minus
X 23542271 X 13294970..13295098 824..696 630 99.2 Minus
X 23542271 X 13295525..13295625 474..374 505 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:57:13 has no hits.

BS04288.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:44 Download gff for BS04288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1764-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:56 Download gff for BS04288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1764-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:18 Download gff for BS04288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1764-RB 465..1290 7..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:37 Download gff for BS04288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1764-RB 465..1290 7..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:37 Download gff for BS04288.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13294963..13295096 698..832 97 <- Minus
X 13295158..13295382 473..697 100 <- Minus
X 13295527..13295624 375..472 100 <- Minus
X 13295689..13296011 52..374 100 <- Minus
X 13296513..13296558 7..51 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:18 Download gff for BS04288.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13188996..13189129 698..832 97 <- Minus
arm_X 13189191..13189415 473..697 100 <- Minus
arm_X 13189560..13189657 375..472 100 <- Minus
arm_X 13189722..13190044 52..374 100 <- Minus
arm_X 13190546..13190591 7..51 93   Minus

BS04288.complete Sequence

839 bp (839 high quality bases) assembled on 2006-02-02

> BS04288.complete
GAAGTTATCAGTCGACATGTCGCCCAAGTACACACATGCGATTGTGGCCA
GAATCTCGGATGCCCTGCTGGAGAACGGAAAGTTCGACGTACAGCTGGCC
AAGCAGCAGCACGAGCAGTACTGCACCCTCCTGAGGACCATTGGTCTCGA
TGTGATCGAGCTGCCGCCGGATGACCAGCTGCCCGAGGGCGTATTTGTCG
AGAACAGTGCGGTGATCTGTAACGGAGTGGCCCTGATCGGAAGATCGGAG
CATCCCAAGCGGCAACTCGAGGCCGAGAGCATGGCCATTATTCTCAAAAA
GGAGCTGGACATTCCGGTCATCGAGATCGAGGATCCGAACGCTCAGCTCG
ATGGTGGCGATGTGCTTTTCACGGGTCGCGAATTCTTCGTTGGCATCTCC
AGTTTCACCAATGAGGAGGGAGCCCGGGCGGTGGCCATGGCCTATCCCGA
ATATCCAGTGACGCCGATTCGGGTCAACGGCACCAAGAGGCTGAAGTACT
ATGTGACCATGGCGGGGCCGGAAGTGCTGTGTGTGAGCAGTAGCCCCACC
TGCCAGGAGATCGTCAAGCGGATGGAGCGCGAGGCCATCTGCACCTACCA
GAAGTTGACTCTGCCCGAGGAGAGTGCGGCCAATATGCTGTACATCAATG
GAACGATCGTGCACAGATCCCCAACGGAAATTCCAGAAGCCTACAAGACT
TTAAAAGAGAAAATCGACATTCCAACACGCAACATAAATATAAGTGAATT
TAGCCAATATTCCAGTGGTCTGACCTCGTCGTGTTTGTTGCTGCGACGCT
GGAAGTCCATACGGAGCTTGTGAAAGCTTTCTAGACCAT

BS04288.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1764-RA 807 CG1764-PA 1..807 17..823 4020 99.9 Plus
CG1764-RB 807 CG1764-PB 1..807 17..823 4020 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1764-RA 1395 CG1764-RA 104..912 16..824 4030 99.9 Plus
CG1764-RB 1780 CG1764-RB 475..1283 16..824 4030 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13295687..13296013 376..50 1635 100 Minus
X 23542271 X 13295158..13295383 697..472 1130 100 Minus
X 23542271 X 13294970..13295098 824..696 630 99.2 Minus
X 23542271 X 13295525..13295625 474..374 505 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:55:49 has no hits.

BS04288.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:35 Download gff for BS04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:54 Download gff for BS04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RA 94..919 7..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:05 Download gff for BS04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RB 476..1281 17..822 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:36 Download gff for BS04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RA 94..919 7..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:09 Download gff for BS04288.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RB 476..1281 17..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:09 Download gff for BS04288.complete
Subject Subject Range Query Range Percent Splice Strand
X 13294972..13295096 698..822 99 <- Minus
X 13295158..13295382 473..697 100 <- Minus
X 13295527..13295624 375..472 100 <- Minus
X 13295689..13296011 52..374 100 <- Minus
X 13296513..13296547 17..51 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:05 Download gff for BS04288.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13189005..13189129 698..822 99 <- Minus
arm_X 13189191..13189415 473..697 100 <- Minus
arm_X 13189560..13189657 375..472 100 <- Minus
arm_X 13189722..13190044 52..374 100 <- Minus
arm_X 13190546..13190580 17..51 100   Minus

BS04288.pep Sequence

Translation from 16 to 822

> BS04288.pep
MSPKYTHAIVARISDALLENGKFDVQLAKQQHEQYCTLLRTIGLDVIELP
PDDQLPEGVFVENSAVICNGVALIGRSEHPKRQLEAESMAIILKKELDIP
VIEIEDPNAQLDGGDVLFTGREFFVGISSFTNEEGARAVAMAYPEYPVTP
IRVNGTKRLKYYVTMAGPEVLCVSSSPTCQEIVKRMEREAICTYQKLTLP
EESAANMLYINGTIVHRSPTEIPEAYKTLKEKIDIPTRNINISEFSQYSS
GLTSSCLLLRRWKSIRSL*

BS04288.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1764-PA 268 CG1764-PA 1..268 1..268 1371 100 Plus
CG1764-PB 268 CG1764-PB 1..268 1..268 1371 100 Plus