Clone Sequence Records
BS04288.3prime Sequence
837 bp (835 high quality bases) assembled on 2005-12-01
> BS04288.3prime
ATGGTCTAGAAAGCTTTCACAAGCTCCGTATGGACTTCCAGCGTCGCAGC
AACAAACACGACGAGGTCAGACCACTGGAATATTGGCTAAATTCACTTAT
ATTTATGTTGCGTGTTGGAATGTCGATTTTCTCTTTTAAAGTCTTGTAGG
CTTCTGGAATTTCCGTTGGGGATCTGTGCACGATCGTTCCATTGATGTAC
AGCATATTGGCCGCACTCTCCTCGGGCAGAGTCAACTTCTGGTAGGTGCA
GATGGCCTCGCGCTCCATCCGCTTGACGATCTCCTGGCAGGTGGGGCTAC
TGCTCACACACAGCACTTCCGGCCCCGCCATGGTCACATAGTACTTCAGC
CTCTTGGTGCCGTTGACCCGAATCGGCGTCACTGGATATTCGGGATAGGC
CATGGCCACCGCCCGGGCTCCCTCCTCATTGGTGAAACTGGAGATGCCAA
CGAAGAATTCGCGACCCGTGAAAAGCACATCGCCACCATCGAGCTGAGCG
TTCGGATCCTCGATCTCGATGACCGGAATGTCCAGCTCCTTTTTGAGAAT
AATGGCCATGCTCTCGGCCTCGAGTTGCCGCTTGGGATGCTCCGATCTTC
CGATCAGGGCCACTCCGTTACAGATCACCGCACTGTTCTCGACAAATACG
CCCTCGGGCAGCTGGTCATCCGGCGGCAGCTCGATCACATCGAGACCAAT
GGTCCTCAGGAGGGTGCAGTACTGCTCGTGCTGCTGCTTGGCCAGCTGTA
CGTCGAACTTTCCGTTCTCCAGCAGGGCATCCGAGATTCTGGCCACAATC
GCATGTGTGTACTTGGGCGACATGTCGACTGATAACT
BS04288.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1764-PA | 807 | CG1764-RA | 1..807 | 823..17 | 4010 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1764-RA | 1395 | CG1764-RA | 104..912 | 824..16 | 4030 | 99.9 | Minus |
CG1764-RB | 1780 | CG1764-RB | 475..1283 | 824..16 | 4030 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13295687..13296013 | 464..790 | 1635 | 100 | Plus |
X | 23542271 | X | 13295158..13295383 | 143..368 | 1130 | 100 | Plus |
X | 23542271 | X | 13294970..13295098 | 16..144 | 630 | 99.2 | Plus |
X | 23542271 | X | 13295525..13295625 | 366..466 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:48:05 has no hits.
BS04288.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:42 Download gff for
BS04288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-PA | 1..807 | 17..823 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:55 Download gff for
BS04288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-PA | 1..807 | 17..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:11 Download gff for
BS04288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-RB | 465..1290 | 8..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:17 Download gff for
BS04288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-RB | 465..1290 | 8..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:17 Download gff for
BS04288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13295158..13295382 | 143..367 | 100 | <- | Plus |
X | 13295527..13295624 | 368..465 | 100 | <- | Plus |
X | 13295689..13296011 | 466..788 | 100 | <- | Plus |
X | 13296513..13296558 | 789..833 | 93 | | Plus |
X | 13294963..13295096 | 8..142 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:11 Download gff for
BS04288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13188996..13189129 | 8..142 | 97 | <- | Plus |
arm_X | 13189191..13189415 | 143..367 | 100 | <- | Plus |
arm_X | 13189560..13189657 | 368..465 | 100 | <- | Plus |
arm_X | 13189722..13190044 | 466..788 | 100 | <- | Plus |
arm_X | 13190546..13190591 | 789..833 | 93 | | Plus |
BS04288.5prime Sequence
837 bp (836 high quality bases) assembled on 2005-11-29
> BS04288.5prime
GAAGTTATCAGTCGACATGTCGCCCAAGTACACACATGCGATTGTGGCCA
GAATCTCGGATGCCCTGCTGGAGAACGGAAAGTTCGACGTACAGCTGGCC
AAGCAGCAGCACGAGCAGTACTGCACCCTCCTGAGGACCATTGGTCTCGA
TGTGATCGAGCTGCCGCCGGATGACCAGCTGCCCGAGGGCGTATTTGTCG
AGAACAGTGCGGTGATCTGTAACGGAGTGGCCCTGATCGGAAGATCGGAG
CATCCCAAGCGGCAACTCGAGGCCGAGAGCATGGCCATTATTCTCAAAAA
GGAGCTGGACATTCCGGTCATCGAGATCGAGGATCCGAACGCTCAGCTCG
ATGGTGGCGATGTGCTTTTCACGGGTCGCGAATTCTTCGTTGGCATCTCC
AGTTTCACCAATGAGGAGGGAGCCCGGGCGGTGGCCATGGCCTATCCCGA
ATATCCAGTGACGCCGATTCGGGTCAACGGCACCAAGAGGCTGAAGTACT
ATGTGACCATGGCGGGGCCGGAAGTGCTGTGTGTGAGCAGTAGCCCCACC
TGCCAGGAGATCGTCAAGCGGATGGAGCGCGAGGCCATCTGCACCTACCA
GAAGTTGACTCTGCCCGAGGAGAGTGCGGCCAATATGCTGTACATCAATG
GAACGATCGTGCACAGATCCCCAACGGAAATTCCAGAAGCCTACAAGACT
TTAAAAGAGAAAATCGACATTCCAACACGCAACATAAATATAAGTGAATT
TAGCCAATATTCCAGTGGTCTGACCTCGTCGTGTTTGTTGCTGCGACGCT
GGAAGTCCATACGGAGCTTGTGAAAGCTTTCTAGACC
BS04288.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1764-PA | 807 | CG1764-RA | 1..807 | 17..823 | 4010 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:57:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1764-RA | 1395 | CG1764-RA | 104..912 | 16..824 | 4030 | 99.9 | Plus |
CG1764-RB | 1780 | CG1764-RB | 475..1283 | 16..824 | 4030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13295687..13296013 | 376..50 | 1635 | 100 | Minus |
X | 23542271 | X | 13295158..13295383 | 697..472 | 1130 | 100 | Minus |
X | 23542271 | X | 13294970..13295098 | 824..696 | 630 | 99.2 | Minus |
X | 23542271 | X | 13295525..13295625 | 474..374 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:57:13 has no hits.
BS04288.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:44 Download gff for
BS04288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:56 Download gff for
BS04288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:18 Download gff for
BS04288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-RB | 465..1290 | 7..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:37 Download gff for
BS04288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-RB | 465..1290 | 7..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:37 Download gff for
BS04288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13294963..13295096 | 698..832 | 97 | <- | Minus |
X | 13295158..13295382 | 473..697 | 100 | <- | Minus |
X | 13295527..13295624 | 375..472 | 100 | <- | Minus |
X | 13295689..13296011 | 52..374 | 100 | <- | Minus |
X | 13296513..13296558 | 7..51 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:18 Download gff for
BS04288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13188996..13189129 | 698..832 | 97 | <- | Minus |
arm_X | 13189191..13189415 | 473..697 | 100 | <- | Minus |
arm_X | 13189560..13189657 | 375..472 | 100 | <- | Minus |
arm_X | 13189722..13190044 | 52..374 | 100 | <- | Minus |
arm_X | 13190546..13190591 | 7..51 | 93 | | Minus |
BS04288.complete Sequence
839 bp (839 high quality bases) assembled on 2006-02-02
> BS04288.complete
GAAGTTATCAGTCGACATGTCGCCCAAGTACACACATGCGATTGTGGCCA
GAATCTCGGATGCCCTGCTGGAGAACGGAAAGTTCGACGTACAGCTGGCC
AAGCAGCAGCACGAGCAGTACTGCACCCTCCTGAGGACCATTGGTCTCGA
TGTGATCGAGCTGCCGCCGGATGACCAGCTGCCCGAGGGCGTATTTGTCG
AGAACAGTGCGGTGATCTGTAACGGAGTGGCCCTGATCGGAAGATCGGAG
CATCCCAAGCGGCAACTCGAGGCCGAGAGCATGGCCATTATTCTCAAAAA
GGAGCTGGACATTCCGGTCATCGAGATCGAGGATCCGAACGCTCAGCTCG
ATGGTGGCGATGTGCTTTTCACGGGTCGCGAATTCTTCGTTGGCATCTCC
AGTTTCACCAATGAGGAGGGAGCCCGGGCGGTGGCCATGGCCTATCCCGA
ATATCCAGTGACGCCGATTCGGGTCAACGGCACCAAGAGGCTGAAGTACT
ATGTGACCATGGCGGGGCCGGAAGTGCTGTGTGTGAGCAGTAGCCCCACC
TGCCAGGAGATCGTCAAGCGGATGGAGCGCGAGGCCATCTGCACCTACCA
GAAGTTGACTCTGCCCGAGGAGAGTGCGGCCAATATGCTGTACATCAATG
GAACGATCGTGCACAGATCCCCAACGGAAATTCCAGAAGCCTACAAGACT
TTAAAAGAGAAAATCGACATTCCAACACGCAACATAAATATAAGTGAATT
TAGCCAATATTCCAGTGGTCTGACCTCGTCGTGTTTGTTGCTGCGACGCT
GGAAGTCCATACGGAGCTTGTGAAAGCTTTCTAGACCAT
BS04288.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1764-RA | 807 | CG1764-PA | 1..807 | 17..823 | 4020 | 99.9 | Plus |
CG1764-RB | 807 | CG1764-PB | 1..807 | 17..823 | 4020 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1764-RA | 1395 | CG1764-RA | 104..912 | 16..824 | 4030 | 99.9 | Plus |
CG1764-RB | 1780 | CG1764-RB | 475..1283 | 16..824 | 4030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13295687..13296013 | 376..50 | 1635 | 100 | Minus |
X | 23542271 | X | 13295158..13295383 | 697..472 | 1130 | 100 | Minus |
X | 23542271 | X | 13294970..13295098 | 824..696 | 630 | 99.2 | Minus |
X | 23542271 | X | 13295525..13295625 | 474..374 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:55:49 has no hits.
BS04288.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:35 Download gff for
BS04288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-RA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:54 Download gff for
BS04288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-RA | 94..919 | 7..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:05 Download gff for
BS04288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-RB | 476..1281 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:36 Download gff for
BS04288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-RA | 94..919 | 7..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:09 Download gff for
BS04288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-RB | 476..1281 | 17..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:09 Download gff for
BS04288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13294972..13295096 | 698..822 | 99 | <- | Minus |
X | 13295158..13295382 | 473..697 | 100 | <- | Minus |
X | 13295527..13295624 | 375..472 | 100 | <- | Minus |
X | 13295689..13296011 | 52..374 | 100 | <- | Minus |
X | 13296513..13296547 | 17..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:05 Download gff for
BS04288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13189005..13189129 | 698..822 | 99 | <- | Minus |
arm_X | 13189191..13189415 | 473..697 | 100 | <- | Minus |
arm_X | 13189560..13189657 | 375..472 | 100 | <- | Minus |
arm_X | 13189722..13190044 | 52..374 | 100 | <- | Minus |
arm_X | 13190546..13190580 | 17..51 | 100 | | Minus |
BS04288.pep Sequence
Translation from 16 to 822
> BS04288.pep
MSPKYTHAIVARISDALLENGKFDVQLAKQQHEQYCTLLRTIGLDVIELP
PDDQLPEGVFVENSAVICNGVALIGRSEHPKRQLEAESMAIILKKELDIP
VIEIEDPNAQLDGGDVLFTGREFFVGISSFTNEEGARAVAMAYPEYPVTP
IRVNGTKRLKYYVTMAGPEVLCVSSSPTCQEIVKRMEREAICTYQKLTLP
EESAANMLYINGTIVHRSPTEIPEAYKTLKEKIDIPTRNINISEFSQYSS
GLTSSCLLLRRWKSIRSL*
BS04288.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1764-PA | 268 | CG1764-PA | 1..268 | 1..268 | 1371 | 100 | Plus |
CG1764-PB | 268 | CG1764-PB | 1..268 | 1..268 | 1371 | 100 | Plus |