Clone BS04289 Report

Search the DGRC for BS04289

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG8209-RA
Protein status:BS04289.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04289.3prime Sequence

912 bp (807 high quality bases) assembled on 2005-12-01

> BS04289.3prime
ATGGTCTAGAAAGCTTTTATGCGGGCGTCTTGGTCATGGTGATGACAGCG
GATGGAACCAAGCCGAGCACTTCCAGCGGCTTCTCGTAGTCGTCCTCGGC
GAACAGCTTGCGCGGAAAGGTGGTCATCAGAGAGAAGGGCGACTCGATGC
CGGTCTTCATCTGGATGAACACACGTACGGCGGACAGCTGCTCCTTGACG
TTGAAGGTTTCCTGTAGTGTTGAGCCATCCTGCAGGCGCACCTGGATGCG
GGTTTCGGTGTAGTCTCGCGGCGGAGATTTCACACCGGCCGGTGGTGACG
AAACTGTGGTGGAGCTCACGGATGGAGCTGGCTCTGCGTTGCCCAATTCC
TTTTGTTCTCTAGCCTTGCGTGCTGCCTTGTCCGCCTCAATTTGAGCCTT
TACCCGATCGCGGGCCGCCTTCTCCTCGTCCTTTTCGCGCTTGCGCTGCT
CAACGATCTTCTTCATCTCCAACTCCTCCATGCGCCGCTTGGCCTCGGTC
ATGTCCTTGCCGGACTTGATGCGATTCTTTTCCCGTTGCAGAGCTTCGAT
TTTCTCGCGCTCCTCGCGTTCGATGCGTTTCTGCTTGAGCTTCTCCTCGA
TGAGGGCCAGCTGGGCCTTCTTCTCCTCCTCGGTGAGCGCCTTCTTTTCC
TCCTCCGATTCGGAGAATTTGGTGTGACCGGTTTTGGCGGCATGGTACTC
CACTTCGGTGTGATCTCTAAGAACTTTGCCGCATTCGTCGCACTTCAGGG
ACTTGGCTACCGGAGCAGAGGTTTCACCTGCGCCACTAGTGCTACTGGAA
GCTGCTGCGGCCGAGGAATCCACAGCCGCAGCTGGTTGAGCTGTGGAACC
AGGGGATTCGCCGGCACCTTGACGGGATGGTATTGGATCATCCACGTGGG
CCAGCAGCCACT

BS04289.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8209-PA 996 CG8209-RA 101..996 912..17 4405 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8209-RA 1295 CG8209-RA 220..1116 912..16 4440 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7976718..7977270 912..360 2720 99.5 Minus
3L 28110227 3L 7977325..7977670 361..16 1730 100 Minus
Blast to na_te.dros performed 2015-02-02 19:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5827..5868 633..592 120 76.2 Minus

BS04289.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:45 Download gff for BS04289.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8209-PA 101..996 17..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:57 Download gff for BS04289.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8209-PA 101..996 17..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:16:45 Download gff for BS04289.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 220..1122 9..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:30 Download gff for BS04289.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 220..1122 9..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:30 Download gff for BS04289.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7976718..7977270 360..912 99 -> Minus
3L 7977327..7977676 9..359 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:16:45 Download gff for BS04289.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7969818..7970370 360..912 99 -> Minus
arm_3L 7970427..7970776 9..359 99   Minus

BS04289.5prime Sequence

904 bp (830 high quality bases) assembled on 2005-11-29

> BS04289.5prime
GAAGTTATCAGTCGACATGAGTGAAGTGCAGACATTGATGGATATGGGAT
TCCCTCGGGAACGTGTTGAATATGCACTGGAGGTGACCAGTAACAAGGGC
GTAGAACCGGCAATGGAGTGGCTGCTGGCCCACGTGGATGATCCAATACC
ATCCCGTCAAGGTGCCGGCGAATCCCCTGGTTCCACAGCTCAACCAGCTG
CGGCTGTGGATTCCTCGGCCGCAGCAGCTTCCAGTAGCACTAGTGGCGCA
GGTGAAACCTCTGCTCCGGTAGCCAAGTCCCTGAAGTGCGACGAATGCGG
CAAAGTTCTTAGAGATCACACCGAAGTGGAGTACCATGCCGCCAAAACCG
GTCACACCAAATTCTCCGAATCGGAGGAGGAAAAGAAGGCGCTCACCGAG
GAGGAGAAGAAGGCCCAGCTGGCCCTCATCGAGGAGAAGCTCAAGCAGAA
ACGCATCGAACGCGAGGAGCGCGAGAAAATCGAAGCTCTGCAACGGGAAA
AGAATCGCATCAAGTCCGGCAAGGACATGACCGAGGCCAAGCGGCGCATG
GAGGAGTTGGAGATGAAGAAGATCGTTGAGCAGCGCAAGCGCGAAAAGGA
CGAGGAGAAGGCGGCCCGCGATCGGGTAAAGGCTCAAATTGAGGCGGACA
AGGCAGCACGCAAGGCTAGAGAACAAAAGGAATTGGGCAACGCAGAGCCA
GCTCCATCCGTGAGCTCCACCACAGTTTCGTCACCACCGGCCGGTGTGAA
ATCTCCGCCGCGAGACTACACCGAAACCCGCATCCAGGTGCGCCTGCAGG
ATGGCTCAACACTACAGGAAACCTTCAACGTCAAGGAGCAGCTGTCCGCC
GTACGTGTGTTCATCCAGATGAAGACGGGCATCGAGTCGCCCTTCTCTCT
GATG

BS04289.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8209-PA 996 CG8209-RA 1..888 17..904 4340 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8209-RA 1295 CG8209-RA 120..1007 17..904 4380 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7976668..7977270 67..669 2970 99.5 Plus
3L 28110227 3L 7977325..7977561 668..904 1170 99.6 Plus
3L 28110227 3L 7976525..7976574 17..66 250 100 Plus
Blast to na_te.dros performed 2015-02-12 05:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5827..5868 396..437 120 76.2 Plus

BS04289.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:46 Download gff for BS04289.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8209-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:58 Download gff for BS04289.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8209-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:03 Download gff for BS04289.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 113..1007 9..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:58:50 Download gff for BS04289.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 113..1007 9..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:58:50 Download gff for BS04289.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7976518..7976574 9..66 93 -> Plus
3L 7976668..7977270 67..669 99 -> Plus
3L 7977327..7977561 670..904 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:03 Download gff for BS04289.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7969618..7969674 9..66 93 -> Plus
arm_3L 7969768..7970370 67..669 99 -> Plus
arm_3L 7970427..7970661 670..904 99   Plus

BS04289.complete Sequence

1028 bp (1028 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634916

> BS04289.complete
GAAGTTATCAGTCGACATGAGTGAAGTGCAGACATTGATGGATATGGGAT
TCCCTCGGGAACGTGTTGAATATGCACTGGAGGTGACCAGTAACAAGGGC
GTAGAACCGGCAATGGAGTGGCTGCTGGCCCACGTGGATGATCCAATACC
ATCCCGTCAAGGTGCCGGCGAATCCCCTGGTTCCACAGCTCAACCAGCTG
CGGCTGTGGATTCCTCGGCCGCAGCAGCTTCCAGTAGCACTAGTGGCGCA
GGTGAAACCTCTGCTCCGGTAGCCAAGTCCCTGAAGTGCGACGAATGCGG
CAAAGTTCTTAGAGATCACACCGAAGTGGAGTACCATGCCGCCAAAACCG
GTCACACCAAATTCTCCGAATCGGAGGAGGAAAAGAAGGCGCTCACCGAG
GAGGAGAAGAAGGCCCAGCTGGCCCTCATCGAGGAGAAGCTCAAGCAGAA
ACGCATCGAACGCGAGGAGCGCGAGAAAATCGAAGCTCTGCAACGGGAAA
AGAATCGCATCAAGTCCGGCAAGGACATGACCGAGGCCAAGCGGCGCATG
GAGGAGTTGGAGATGAAGAAGATCGTTGAGCAGCGCAAGCGCGAAAAGGA
CGAGGAGAAGGCGGCCCGCGATCGGGTAAAGGCTCAAATTGAGGCGGACA
AGGCAGCACGCAAGGCTAGAGAACAAAAGGAATTGGGCAACGCAGAGCCA
GCTCCATCCGTGAGCTCCACCACAGTTTCGTCACCACCGGCCGGTGTGAA
ATCTCCGCCGCGAGACTACACCGAAACCCGCATCCAGGTGCGCCTGCAGG
ATGGCTCAACACTACAGGAAACCTTCAACGTCAAGGAGCAGCTGTCCGCC
GTACGTGTGTTCATCCAGATGAAGACCGGCATCGAGTCGCCCTTCTCTCT
GATGACCACCTTTCCGCGCAAGCTGTTCGCCGAGGACGACTACGAGAAGC
CGCTGGAAGTGCTCGGCTTGGTTCCATCCGCTGTCATCACCATGACCAAG
ACGCCCGCATAAAAGCTTTCTAGACCAT

BS04289.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8209-RA 996 CG8209-PA 1..996 17..1012 4935 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8209-RA 1295 CG8209-RA 120..1116 17..1013 4940 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7976668..7977270 67..669 2970 99.5 Plus
3L 28110227 3L 7977325..7977670 668..1013 1730 100 Plus
3L 28110227 3L 7976525..7976574 17..66 250 100 Plus
Blast to na_te.dros performed 2014-11-27 16:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5827..5868 396..437 120 76.2 Plus

BS04289.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:23 Download gff for BS04289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 1..996 17..1012 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:51 Download gff for BS04289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 216..1225 9..1020 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:37 Download gff for BS04289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 120..1113 17..1010 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:23 Download gff for BS04289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 216..1225 9..1020 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:09 Download gff for BS04289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 120..1113 17..1010 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:09 Download gff for BS04289.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7976525..7976574 17..66 100 -> Plus
3L 7977327..7977667 670..1010 100   Plus
3L 7976668..7977270 67..669 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:37 Download gff for BS04289.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7969625..7969674 17..66 100 -> Plus
arm_3L 7969768..7970370 67..669 99 -> Plus
arm_3L 7970427..7970767 670..1010 100   Plus

BS04289.pep Sequence

Translation from 16 to 1011

> BS04289.pep
MSEVQTLMDMGFPRERVEYALEVTSNKGVEPAMEWLLAHVDDPIPSRQGA
GESPGSTAQPAAAVDSSAAAASSSTSGAGETSAPVAKSLKCDECGKVLRD
HTEVEYHAAKTGHTKFSESEEEKKALTEEEKKAQLALIEEKLKQKRIERE
EREKIEALQREKNRIKSGKDMTEAKRRMEELEMKKIVEQRKREKDEEKAA
RDRVKAQIEADKAARKAREQKELGNAEPAPSVSSTTVSSPPAGVKSPPRD
YTETRIQVRLQDGSTLQETFNVKEQLSAVRVFIQMKTGIESPFSLMTTFP
RKLFAEDDYEKPLEVLGLVPSAVITMTKTPA*

BS04289.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8209-PA 331 CG8209-PA 1..331 1..331 1649 100 Plus
CG8042-PA 656 CG8042-PA 206..474 46..324 278 32.3 Plus