Clone Sequence Records
BS04289.3prime Sequence
912 bp (807 high quality bases) assembled on 2005-12-01
> BS04289.3prime
ATGGTCTAGAAAGCTTTTATGCGGGCGTCTTGGTCATGGTGATGACAGCG
GATGGAACCAAGCCGAGCACTTCCAGCGGCTTCTCGTAGTCGTCCTCGGC
GAACAGCTTGCGCGGAAAGGTGGTCATCAGAGAGAAGGGCGACTCGATGC
CGGTCTTCATCTGGATGAACACACGTACGGCGGACAGCTGCTCCTTGACG
TTGAAGGTTTCCTGTAGTGTTGAGCCATCCTGCAGGCGCACCTGGATGCG
GGTTTCGGTGTAGTCTCGCGGCGGAGATTTCACACCGGCCGGTGGTGACG
AAACTGTGGTGGAGCTCACGGATGGAGCTGGCTCTGCGTTGCCCAATTCC
TTTTGTTCTCTAGCCTTGCGTGCTGCCTTGTCCGCCTCAATTTGAGCCTT
TACCCGATCGCGGGCCGCCTTCTCCTCGTCCTTTTCGCGCTTGCGCTGCT
CAACGATCTTCTTCATCTCCAACTCCTCCATGCGCCGCTTGGCCTCGGTC
ATGTCCTTGCCGGACTTGATGCGATTCTTTTCCCGTTGCAGAGCTTCGAT
TTTCTCGCGCTCCTCGCGTTCGATGCGTTTCTGCTTGAGCTTCTCCTCGA
TGAGGGCCAGCTGGGCCTTCTTCTCCTCCTCGGTGAGCGCCTTCTTTTCC
TCCTCCGATTCGGAGAATTTGGTGTGACCGGTTTTGGCGGCATGGTACTC
CACTTCGGTGTGATCTCTAAGAACTTTGCCGCATTCGTCGCACTTCAGGG
ACTTGGCTACCGGAGCAGAGGTTTCACCTGCGCCACTAGTGCTACTGGAA
GCTGCTGCGGCCGAGGAATCCACAGCCGCAGCTGGTTGAGCTGTGGAACC
AGGGGATTCGCCGGCACCTTGACGGGATGGTATTGGATCATCCACGTGGG
CCAGCAGCCACT
BS04289.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8209-PA | 996 | CG8209-RA | 101..996 | 912..17 | 4405 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8209-RA | 1295 | CG8209-RA | 220..1116 | 912..16 | 4440 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7976718..7977270 | 912..360 | 2720 | 99.5 | Minus |
3L | 28110227 | 3L | 7977325..7977670 | 361..16 | 1730 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 19:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5827..5868 | 633..592 | 120 | 76.2 | Minus |
BS04289.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:45 Download gff for
BS04289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8209-PA | 101..996 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:57 Download gff for
BS04289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8209-PA | 101..996 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:16:45 Download gff for
BS04289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8209-RA | 220..1122 | 9..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:30 Download gff for
BS04289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8209-RA | 220..1122 | 9..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:30 Download gff for
BS04289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7976718..7977270 | 360..912 | 99 | -> | Minus |
3L | 7977327..7977676 | 9..359 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:16:45 Download gff for
BS04289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7969818..7970370 | 360..912 | 99 | -> | Minus |
arm_3L | 7970427..7970776 | 9..359 | 99 | | Minus |
BS04289.5prime Sequence
904 bp (830 high quality bases) assembled on 2005-11-29
> BS04289.5prime
GAAGTTATCAGTCGACATGAGTGAAGTGCAGACATTGATGGATATGGGAT
TCCCTCGGGAACGTGTTGAATATGCACTGGAGGTGACCAGTAACAAGGGC
GTAGAACCGGCAATGGAGTGGCTGCTGGCCCACGTGGATGATCCAATACC
ATCCCGTCAAGGTGCCGGCGAATCCCCTGGTTCCACAGCTCAACCAGCTG
CGGCTGTGGATTCCTCGGCCGCAGCAGCTTCCAGTAGCACTAGTGGCGCA
GGTGAAACCTCTGCTCCGGTAGCCAAGTCCCTGAAGTGCGACGAATGCGG
CAAAGTTCTTAGAGATCACACCGAAGTGGAGTACCATGCCGCCAAAACCG
GTCACACCAAATTCTCCGAATCGGAGGAGGAAAAGAAGGCGCTCACCGAG
GAGGAGAAGAAGGCCCAGCTGGCCCTCATCGAGGAGAAGCTCAAGCAGAA
ACGCATCGAACGCGAGGAGCGCGAGAAAATCGAAGCTCTGCAACGGGAAA
AGAATCGCATCAAGTCCGGCAAGGACATGACCGAGGCCAAGCGGCGCATG
GAGGAGTTGGAGATGAAGAAGATCGTTGAGCAGCGCAAGCGCGAAAAGGA
CGAGGAGAAGGCGGCCCGCGATCGGGTAAAGGCTCAAATTGAGGCGGACA
AGGCAGCACGCAAGGCTAGAGAACAAAAGGAATTGGGCAACGCAGAGCCA
GCTCCATCCGTGAGCTCCACCACAGTTTCGTCACCACCGGCCGGTGTGAA
ATCTCCGCCGCGAGACTACACCGAAACCCGCATCCAGGTGCGCCTGCAGG
ATGGCTCAACACTACAGGAAACCTTCAACGTCAAGGAGCAGCTGTCCGCC
GTACGTGTGTTCATCCAGATGAAGACGGGCATCGAGTCGCCCTTCTCTCT
GATG
BS04289.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8209-PA | 996 | CG8209-RA | 1..888 | 17..904 | 4340 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8209-RA | 1295 | CG8209-RA | 120..1007 | 17..904 | 4380 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7976668..7977270 | 67..669 | 2970 | 99.5 | Plus |
3L | 28110227 | 3L | 7977325..7977561 | 668..904 | 1170 | 99.6 | Plus |
3L | 28110227 | 3L | 7976525..7976574 | 17..66 | 250 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 05:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5827..5868 | 396..437 | 120 | 76.2 | Plus |
BS04289.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:46 Download gff for
BS04289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8209-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:04:58 Download gff for
BS04289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8209-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:03 Download gff for
BS04289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8209-RA | 113..1007 | 9..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:58:50 Download gff for
BS04289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8209-RA | 113..1007 | 9..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:58:50 Download gff for
BS04289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7976518..7976574 | 9..66 | 93 | -> | Plus |
3L | 7976668..7977270 | 67..669 | 99 | -> | Plus |
3L | 7977327..7977561 | 670..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:03 Download gff for
BS04289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7969618..7969674 | 9..66 | 93 | -> | Plus |
arm_3L | 7969768..7970370 | 67..669 | 99 | -> | Plus |
arm_3L | 7970427..7970661 | 670..904 | 99 | | Plus |
BS04289.complete Sequence
1028 bp (1028 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634916
> BS04289.complete
GAAGTTATCAGTCGACATGAGTGAAGTGCAGACATTGATGGATATGGGAT
TCCCTCGGGAACGTGTTGAATATGCACTGGAGGTGACCAGTAACAAGGGC
GTAGAACCGGCAATGGAGTGGCTGCTGGCCCACGTGGATGATCCAATACC
ATCCCGTCAAGGTGCCGGCGAATCCCCTGGTTCCACAGCTCAACCAGCTG
CGGCTGTGGATTCCTCGGCCGCAGCAGCTTCCAGTAGCACTAGTGGCGCA
GGTGAAACCTCTGCTCCGGTAGCCAAGTCCCTGAAGTGCGACGAATGCGG
CAAAGTTCTTAGAGATCACACCGAAGTGGAGTACCATGCCGCCAAAACCG
GTCACACCAAATTCTCCGAATCGGAGGAGGAAAAGAAGGCGCTCACCGAG
GAGGAGAAGAAGGCCCAGCTGGCCCTCATCGAGGAGAAGCTCAAGCAGAA
ACGCATCGAACGCGAGGAGCGCGAGAAAATCGAAGCTCTGCAACGGGAAA
AGAATCGCATCAAGTCCGGCAAGGACATGACCGAGGCCAAGCGGCGCATG
GAGGAGTTGGAGATGAAGAAGATCGTTGAGCAGCGCAAGCGCGAAAAGGA
CGAGGAGAAGGCGGCCCGCGATCGGGTAAAGGCTCAAATTGAGGCGGACA
AGGCAGCACGCAAGGCTAGAGAACAAAAGGAATTGGGCAACGCAGAGCCA
GCTCCATCCGTGAGCTCCACCACAGTTTCGTCACCACCGGCCGGTGTGAA
ATCTCCGCCGCGAGACTACACCGAAACCCGCATCCAGGTGCGCCTGCAGG
ATGGCTCAACACTACAGGAAACCTTCAACGTCAAGGAGCAGCTGTCCGCC
GTACGTGTGTTCATCCAGATGAAGACCGGCATCGAGTCGCCCTTCTCTCT
GATGACCACCTTTCCGCGCAAGCTGTTCGCCGAGGACGACTACGAGAAGC
CGCTGGAAGTGCTCGGCTTGGTTCCATCCGCTGTCATCACCATGACCAAG
ACGCCCGCATAAAAGCTTTCTAGACCAT
BS04289.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8209-RA | 996 | CG8209-PA | 1..996 | 17..1012 | 4935 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8209-RA | 1295 | CG8209-RA | 120..1116 | 17..1013 | 4940 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7976668..7977270 | 67..669 | 2970 | 99.5 | Plus |
3L | 28110227 | 3L | 7977325..7977670 | 668..1013 | 1730 | 100 | Plus |
3L | 28110227 | 3L | 7976525..7976574 | 17..66 | 250 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5827..5868 | 396..437 | 120 | 76.2 | Plus |
BS04289.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:23 Download gff for
BS04289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8209-RA | 1..996 | 17..1012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:51 Download gff for
BS04289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8209-RA | 216..1225 | 9..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:37 Download gff for
BS04289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8209-RA | 120..1113 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:23 Download gff for
BS04289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8209-RA | 216..1225 | 9..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:09 Download gff for
BS04289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8209-RA | 120..1113 | 17..1010 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:09 Download gff for
BS04289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7976525..7976574 | 17..66 | 100 | -> | Plus |
3L | 7977327..7977667 | 670..1010 | 100 | | Plus |
3L | 7976668..7977270 | 67..669 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:37 Download gff for
BS04289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7969625..7969674 | 17..66 | 100 | -> | Plus |
arm_3L | 7969768..7970370 | 67..669 | 99 | -> | Plus |
arm_3L | 7970427..7970767 | 670..1010 | 100 | | Plus |
BS04289.pep Sequence
Translation from 16 to 1011
> BS04289.pep
MSEVQTLMDMGFPRERVEYALEVTSNKGVEPAMEWLLAHVDDPIPSRQGA
GESPGSTAQPAAAVDSSAAAASSSTSGAGETSAPVAKSLKCDECGKVLRD
HTEVEYHAAKTGHTKFSESEEEKKALTEEEKKAQLALIEEKLKQKRIERE
EREKIEALQREKNRIKSGKDMTEAKRRMEELEMKKIVEQRKREKDEEKAA
RDRVKAQIEADKAARKAREQKELGNAEPAPSVSSTTVSSPPAGVKSPPRD
YTETRIQVRLQDGSTLQETFNVKEQLSAVRVFIQMKTGIESPFSLMTTFP
RKLFAEDDYEKPLEVLGLVPSAVITMTKTPA*
BS04289.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8209-PA | 331 | CG8209-PA | 1..331 | 1..331 | 1649 | 100 | Plus |
CG8042-PA | 656 | CG8042-PA | 206..474 | 46..324 | 278 | 32.3 | Plus |