Clone BS04291 Report

Search the DGRC for BS04291

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG17270-RA
Protein status:BS04291.pep: full length peptide match
Sequenced Size:542

Clone Sequence Records

BS04291.5prime Sequence

264 bp (185 high quality bases) assembled on 2005-12-01

> BS04291.5prime
GAAGTTATCAGTCGACATGGCTGCCATGCAGTCTGGCGGACGACCCCGCG
AGCGATTGCTGTACGCCTTCCGGGGATGGATAGCATTCGTGGCCTTTATG
GACCTGGGCACGGCCTTTAGGAGCTACATAGAAAGACGCAGCTTCCTGGG
CGATCACAGCGACACCCAGTTCATAGAGGGGGACTACACCATATCGCGGA
TCATCGGGATGTACTGCCTGCTGANGGCCATCGCTCTCGTCCACTGCACC
CTCTACATTCACTA

BS04291.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17270-PA 510 CG17270-RA 1..248 17..264 1196 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17270-RB 1034 CG17270-RB 220..467 17..264 1214 99.2 Plus
CG17270-RA 1362 CG17270-RA 220..467 17..264 1214 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20817639..20817800 180..19 795 99.4 Minus
3R 32079331 3R 20817501..20817586 264..179 419 98.8 Minus
Blast to na_te.dros performed on 2015-02-13 09:07:37 has no hits.

BS04291.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:48 Download gff for BS04291.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17270-PA 1..247 17..263 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:02 Download gff for BS04291.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17270-PA 1..247 17..263 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:28:06 Download gff for BS04291.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 220..466 17..263 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:50:41 Download gff for BS04291.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 220..466 17..263 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:50:41 Download gff for BS04291.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20817640..20817800 19..179 99   Minus
3R 20817502..20817585 180..263 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:28:06 Download gff for BS04291.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16643224..16643307 180..263 98 <- Minus
arm_3R 16643362..16643522 19..179 99   Minus

BS04291.3prime Sequence

266 bp (224 high quality bases) assembled on 2005-12-01

> BS04291.3prime
ATGGTCTAGAAAGCTTCTATTGTTTTTTCGCTCGTCGTCTCTTGAAGCCC
GTCATTTGCTTGAGCAGCTGTGAGTTTTCGTCATCCAGATCCATATTTGG
CTCCCAGAGCCGCAGTCGTTTGGGTATGTAGATGAGGCCCAGTAGAGTTA
TAGAATTTAGCACACACGGGAAGATCACGTAGAAGTTAATGGTGCTTGAG
CGAAAGTAGAGTGCCTCGGTGGCATAGAAGACCATGGTGAGGGGGCATGA
GCAGCCGCCCATGCTG

BS04291.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17270-PA 510 CG17270-RA 284..510 243..17 1085 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17270-RB 1034 CG17270-RB 480..729 266..17 1175 98 Minus
CG17270-RA 1362 CG17270-RA 480..729 266..17 1175 98 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20817078..20817214 17..153 670 99.3 Plus
3R 32079331 3R 20817309..20817421 154..266 505 96.5 Plus
Blast to na_te.dros performed on 2015-02-12 17:08:29 has no hits.

BS04291.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:47 Download gff for BS04291.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17270-PA 261..510 17..266 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:00 Download gff for BS04291.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17270-PA 261..510 17..266 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:25 Download gff for BS04291.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 480..732 10..266 96   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:34 Download gff for BS04291.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 480..732 10..266 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:34 Download gff for BS04291.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20817309..20817421 154..266 96   Plus
3R 20817075..20817214 10..153 96 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:25 Download gff for BS04291.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16642797..16642936 10..153 96 <- Plus
arm_3R 16643031..16643143 154..266 96   Plus

BS04291.complete Sequence

542 bp assembled on 2009-08-24

GenBank Submission: KX797803

> BS04291.complete
GAAGTTATCAGTCGACATGGCTGCCATGCAGTCTGGCGGACGACCCCGCG
AGCGATTGCTGTACGCCTTCCGGGGATGGATAGCATTCGTGGCCTTTATG
GACCTGGGCACGGCCTTTAGGAGCTACATAGAAAGACGCAGCTTCCTGGG
CGATCACAGCGACACCCAGTTCATAGAGGGGGACTACACCATATCGCGGA
TCATCGGGATGTACTGCCTGCTGAAGGCCATCGCTCTCGTCCACTGCACC
CTCTACATTCACTACAAGCCGGTGGTCAGCATGGGCGGCTGCTCATTGGC
CCTCACCATGGTCTTCTATGCCACCGAGGCACTCTACTTTCGCTCAAGCA
CCATTAACTTCTACGTGATCTTCCCGTGTGTGCTAAATTCTATAACTCTA
CTGGGCCTCATCTACATACCCAAACGACTGCGGCTCTGGGAGCCAAATAT
GGATCTGGATGACGAAAACTCACAGCTGCTCAAGCAAATGACGGGCTTCA
AGAGACGACGAGCGAAAAAACAATAGAAGCTTTCTAGACCAT

BS04291.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17270-RB 510 CG17270-PB 1..510 17..526 2505 99.4 Plus
CG17270-RA 510 CG17270-PA 1..510 17..526 2505 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17270-RB 1034 CG17270-RB 220..729 17..526 2505 99.4 Plus
CG17270-RA 1362 CG17270-RA 220..729 17..526 2505 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20817639..20817800 180..19 795 99.4 Minus
3R 32079331 3R 20817078..20817214 526..390 670 99.3 Minus
3R 32079331 3R 20817309..20817427 389..271 580 99.2 Minus
3R 32079331 3R 20817494..20817586 271..179 465 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:31:59 has no hits.

BS04291.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:40 Download gff for BS04291.complete
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 215..712 17..514 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:21 Download gff for BS04291.complete
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 220..717 17..514 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:53 Download gff for BS04291.complete
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 220..717 17..514 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:53 Download gff for BS04291.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20817495..20817585 180..270 100 <- Minus
3R 20817640..20817802 17..179 98   Minus
3R 20817090..20817214 390..514 99 <- Minus
3R 20817309..20817427 271..389 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:21 Download gff for BS04291.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16643362..16643524 17..179 98   Minus
arm_3R 16642812..16642936 390..514 99 <- Minus
arm_3R 16643031..16643149 271..389 99 <- Minus
arm_3R 16643217..16643307 180..270 100 <- Minus

BS04291.pep Sequence

Translation from 16 to 525

> BS04291.pep
MAAMQSGGRPRERLLYAFRGWIAFVAFMDLGTAFRSYIERRSFLGDHSDT
QFIEGDYTISRIIGMYCLLKAIALVHCTLYIHYKPVVSMGGCSLALTMVF
YATEALYFRSSTINFYVIFPCVLNSITLLGLIYIPKRLRLWEPNMDLDDE
NSQLLKQMTGFKRRRAKKQ*

BS04291.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17270-PB 169 CG17270-PB 1..169 1..169 882 100 Plus
CG17270-PA 169 CG17270-PA 1..169 1..169 882 100 Plus