Clone Sequence Records
BS04291.5prime Sequence
264 bp (185 high quality bases) assembled on 2005-12-01
> BS04291.5prime
GAAGTTATCAGTCGACATGGCTGCCATGCAGTCTGGCGGACGACCCCGCG
AGCGATTGCTGTACGCCTTCCGGGGATGGATAGCATTCGTGGCCTTTATG
GACCTGGGCACGGCCTTTAGGAGCTACATAGAAAGACGCAGCTTCCTGGG
CGATCACAGCGACACCCAGTTCATAGAGGGGGACTACACCATATCGCGGA
TCATCGGGATGTACTGCCTGCTGANGGCCATCGCTCTCGTCCACTGCACC
CTCTACATTCACTA
BS04291.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17270-PA | 510 | CG17270-RA | 1..248 | 17..264 | 1196 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17270-RB | 1034 | CG17270-RB | 220..467 | 17..264 | 1214 | 99.2 | Plus |
CG17270-RA | 1362 | CG17270-RA | 220..467 | 17..264 | 1214 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20817639..20817800 | 180..19 | 795 | 99.4 | Minus |
3R | 32079331 | 3R | 20817501..20817586 | 264..179 | 419 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:07:37 has no hits.
BS04291.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:48 Download gff for
BS04291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17270-PA | 1..247 | 17..263 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:02 Download gff for
BS04291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17270-PA | 1..247 | 17..263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:28:06 Download gff for
BS04291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17270-RA | 220..466 | 17..263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:50:41 Download gff for
BS04291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17270-RA | 220..466 | 17..263 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:50:41 Download gff for
BS04291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20817640..20817800 | 19..179 | 99 | | Minus |
3R | 20817502..20817585 | 180..263 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:28:06 Download gff for
BS04291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16643224..16643307 | 180..263 | 98 | <- | Minus |
arm_3R | 16643362..16643522 | 19..179 | 99 | | Minus |
BS04291.3prime Sequence
266 bp (224 high quality bases) assembled on 2005-12-01
> BS04291.3prime
ATGGTCTAGAAAGCTTCTATTGTTTTTTCGCTCGTCGTCTCTTGAAGCCC
GTCATTTGCTTGAGCAGCTGTGAGTTTTCGTCATCCAGATCCATATTTGG
CTCCCAGAGCCGCAGTCGTTTGGGTATGTAGATGAGGCCCAGTAGAGTTA
TAGAATTTAGCACACACGGGAAGATCACGTAGAAGTTAATGGTGCTTGAG
CGAAAGTAGAGTGCCTCGGTGGCATAGAAGACCATGGTGAGGGGGCATGA
GCAGCCGCCCATGCTG
BS04291.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17270-PA | 510 | CG17270-RA | 284..510 | 243..17 | 1085 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17270-RB | 1034 | CG17270-RB | 480..729 | 266..17 | 1175 | 98 | Minus |
CG17270-RA | 1362 | CG17270-RA | 480..729 | 266..17 | 1175 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20817078..20817214 | 17..153 | 670 | 99.3 | Plus |
3R | 32079331 | 3R | 20817309..20817421 | 154..266 | 505 | 96.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:08:29 has no hits.
BS04291.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:47 Download gff for
BS04291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17270-PA | 261..510 | 17..266 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:00 Download gff for
BS04291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17270-PA | 261..510 | 17..266 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:25 Download gff for
BS04291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17270-RA | 480..732 | 10..266 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:34 Download gff for
BS04291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17270-RA | 480..732 | 10..266 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:34 Download gff for
BS04291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20817309..20817421 | 154..266 | 96 | | Plus |
3R | 20817075..20817214 | 10..153 | 96 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:25 Download gff for
BS04291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16642797..16642936 | 10..153 | 96 | <- | Plus |
arm_3R | 16643031..16643143 | 154..266 | 96 | | Plus |
BS04291.complete Sequence
542 bp assembled on 2009-08-24
GenBank Submission: KX797803
> BS04291.complete
GAAGTTATCAGTCGACATGGCTGCCATGCAGTCTGGCGGACGACCCCGCG
AGCGATTGCTGTACGCCTTCCGGGGATGGATAGCATTCGTGGCCTTTATG
GACCTGGGCACGGCCTTTAGGAGCTACATAGAAAGACGCAGCTTCCTGGG
CGATCACAGCGACACCCAGTTCATAGAGGGGGACTACACCATATCGCGGA
TCATCGGGATGTACTGCCTGCTGAAGGCCATCGCTCTCGTCCACTGCACC
CTCTACATTCACTACAAGCCGGTGGTCAGCATGGGCGGCTGCTCATTGGC
CCTCACCATGGTCTTCTATGCCACCGAGGCACTCTACTTTCGCTCAAGCA
CCATTAACTTCTACGTGATCTTCCCGTGTGTGCTAAATTCTATAACTCTA
CTGGGCCTCATCTACATACCCAAACGACTGCGGCTCTGGGAGCCAAATAT
GGATCTGGATGACGAAAACTCACAGCTGCTCAAGCAAATGACGGGCTTCA
AGAGACGACGAGCGAAAAAACAATAGAAGCTTTCTAGACCAT
BS04291.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17270-RB | 510 | CG17270-PB | 1..510 | 17..526 | 2505 | 99.4 | Plus |
CG17270-RA | 510 | CG17270-PA | 1..510 | 17..526 | 2505 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17270-RB | 1034 | CG17270-RB | 220..729 | 17..526 | 2505 | 99.4 | Plus |
CG17270-RA | 1362 | CG17270-RA | 220..729 | 17..526 | 2505 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20817639..20817800 | 180..19 | 795 | 99.4 | Minus |
3R | 32079331 | 3R | 20817078..20817214 | 526..390 | 670 | 99.3 | Minus |
3R | 32079331 | 3R | 20817309..20817427 | 389..271 | 580 | 99.2 | Minus |
3R | 32079331 | 3R | 20817494..20817586 | 271..179 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:31:59 has no hits.
BS04291.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:40 Download gff for
BS04291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17270-RA | 215..712 | 17..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:21 Download gff for
BS04291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17270-RA | 220..717 | 17..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:53 Download gff for
BS04291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17270-RA | 220..717 | 17..514 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:53 Download gff for
BS04291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20817495..20817585 | 180..270 | 100 | <- | Minus |
3R | 20817640..20817802 | 17..179 | 98 | | Minus |
3R | 20817090..20817214 | 390..514 | 99 | <- | Minus |
3R | 20817309..20817427 | 271..389 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:21 Download gff for
BS04291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16643362..16643524 | 17..179 | 98 | | Minus |
arm_3R | 16642812..16642936 | 390..514 | 99 | <- | Minus |
arm_3R | 16643031..16643149 | 271..389 | 99 | <- | Minus |
arm_3R | 16643217..16643307 | 180..270 | 100 | <- | Minus |
BS04291.pep Sequence
Translation from 16 to 525
> BS04291.pep
MAAMQSGGRPRERLLYAFRGWIAFVAFMDLGTAFRSYIERRSFLGDHSDT
QFIEGDYTISRIIGMYCLLKAIALVHCTLYIHYKPVVSMGGCSLALTMVF
YATEALYFRSSTINFYVIFPCVLNSITLLGLIYIPKRLRLWEPNMDLDDE
NSQLLKQMTGFKRRRAKKQ*
BS04291.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17270-PB | 169 | CG17270-PB | 1..169 | 1..169 | 882 | 100 | Plus |
CG17270-PA | 169 | CG17270-PA | 1..169 | 1..169 | 882 | 100 | Plus |