Clone BS04292 Report

Search the DGRC for BS04292

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptRab27-RC
Protein status:BS04292.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04292.3prime Sequence

723 bp (722 high quality bases) assembled on 2005-12-01

> BS04292.3prime
ATGGTCTAGAAAGCTTCTAACAGTTGCGGCAGTTGCGCCGCGAGCAGGGC
TCCTCTCGCCGATCGTGGAGGCGCACCAGGTCCTCCGGCTGACCGTAGGC
GATGTTCGGCAGGCATCGCGACTGGGTCAGTAGCAGGGAGAACTCGCGGT
TGCAGGCCGCGTTCTCGATCCGCTCCATGACCCGGCCAACCAGCAGCTCC
ACGGCCTCCTTGACGTTGGCGCCGGTGCAGGCGCTCGTCTCGATGTACGG
CAGCCGGTAGCGTCGGCAGAGGGCCGCCACCTGGTCGCGACTCACCACGC
GCAGCTGCAGCAGGTCGCACTTGTTGCCGCAGAGGACCACGTCGGGGTCC
TCGGAGTAGGCGTGCGTCCGCAGCTGCGACAGCCAGTTGGCCGTCTCCAG
GAAGCTCTTCTCGCTGGTCAGGTCGAAGATGAGCAGGAAACCCATGGCGT
CGCGGTAAAACGCCGTGGTTAGTGAACGGAAGCGCTCCTGTCCGGCGGTG
TCCCAGATCTGCAGGTGGATGCGGTGGCGGCGTCCGCGGGAGTTGTACAG
CAGCCGCTTTTCGCGGAAGTCGATGCCCACAGTGGAGATGAACTGGGTGT
GGAACCGGCCATCCGTGTACTGGTAGAGGAGGCAGGTCTTTCCCACGCCG
GAGTCGCCCAGGACGAGGAACTTGAGCAGGTAATCGTAGTCGATGTTGGC
GCCCGTCATGTCGACTGATAACT

BS04292.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14791-PC 693 Rab27-RC 1..693 709..17 3440 99.8 Minus
CG14791-PB 711 Rab27-RB 56..711 672..17 3255 99.8 Minus
CG9575-PA 606 Rab35-RA 175..212 514..477 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
Rab27-RC 1564 CG14791-RC 779..1471 709..17 3450 99.9 Minus
Rab27-RB 1466 CG14791-RB 718..1373 672..17 3265 99.8 Minus
RabX4-RA 1416 CG31118-RA 625..724 514..415 185 79 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1473977..1474511 17..551 2675 100 Plus
X 23542271 X 1474675..1474833 551..709 780 99.4 Plus
3R 32079331 3R 24827475..24827574 415..514 185 79 Plus
Blast to na_te.dros performed on 2015-02-06 13:35:15 has no hits.

BS04292.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:49 Download gff for BS04292.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab27-PC 1..693 17..709 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:03 Download gff for BS04292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14791-PC 1..693 17..709 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:11:25 Download gff for BS04292.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 735..1431 13..709 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:01:11 Download gff for BS04292.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 779..1475 13..709 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:01:11 Download gff for BS04292.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1473973..1474510 13..550 99 <- Plus
X 1474675..1474833 551..709 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:11:25 Download gff for BS04292.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1368006..1368543 13..550 99 <- Plus
arm_X 1368708..1368866 551..709 99   Plus

BS04292.5prime Sequence

723 bp (722 high quality bases) assembled on 2005-12-01

> BS04292.5prime
GAAGTTATCAGTCGACATGACGGGCGCCAACATCGACTACGATTACCTGC
TCAAGTTCCTCGTCCTGGGCGACTCCGGCGTGGGAAAGACCTGCCTCCTC
TACCAGTACACGGATGGCCGGTTCCACACCCAGTTCATCTCCACTGTGGG
CATCGACTTCCGCGAAAAGCGGCTGCTGTACAACTCCCGCGGACGCCGCC
ACCGCATCCACCTGCAGATCTGGGACACCGCCGGACAGGAGCGCTTCCGT
TCACTAACCACGGCGTTTTACCGCGACGCCATGGGTTTCCTGCTCATCTT
CGACCTGACCAGCGAGAAGAGCTTCCTGGAGACGGCCAACTGGCTGTCGC
AGCTGCGGACGCACGCCTACTCCGAGGACCCCGACGTGGTCCTCTGCGGC
AACAAGTGCGACCTGCTGCAGCTGCGCGTGGTGAGTCGCGACCAGGTGGC
GGCCCTCTGCCGACGCTACCGGCTGCCGTACATCGAGACGAGCGCCTGCA
CCGGCGCCAACGTCAAGGAGGCCGTGGAGCTGCTGGTTGGCCGGGTCATG
GAGCGGATCGAGAACGCGGCCTGCAACCGCGAGTTCTCCCTGCTACTGAC
CCAGTCGCGATGCCTGCCGAACATCGCCTACGGTCAGCCGGAGGACCTGG
TGCGCCTCCACGATCGGCGAGAGGAGCCCTGCTCGCGGCGCAACTGCCGC
AACTGTTAGAAGCTTTCTAGACC

BS04292.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14791-PC 693 Rab27-RC 1..693 17..709 3440 99.8 Plus
CG14791-PB 711 Rab27-RB 56..711 54..709 3255 99.8 Plus
CG9575-PA 606 Rab35-RA 175..212 212..249 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Rab27-RC 1564 CG14791-RC 779..1471 17..709 3450 99.9 Plus
Rab27-RB 1466 CG14791-RB 718..1373 54..709 3265 99.8 Plus
RabX4-RA 1416 CG31118-RA 625..724 212..311 185 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1473977..1474511 709..175 2675 100 Minus
X 23542271 X 1474675..1474833 175..17 780 99.4 Minus
3R 32079331 3R 24827475..24827574 311..212 185 79 Minus
Blast to na_te.dros performed on 2015-02-02 12:23:38 has no hits.

BS04292.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:50 Download gff for BS04292.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab27-PC 1..693 17..709 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:05 Download gff for BS04292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14791-PC 1..693 17..709 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:49:04 Download gff for BS04292.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 735..1431 17..713 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:29 Download gff for BS04292.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 779..1475 17..713 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:29 Download gff for BS04292.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1473973..1474510 176..713 99 <- Minus
X 1474675..1474833 17..175 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:49:04 Download gff for BS04292.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1368006..1368543 176..713 99 <- Minus
arm_X 1368708..1368866 17..175 99   Minus

BS04292.complete Sequence

725 bp assembled on 2007-10-17

GenBank Submission: FJ634917

> BS04292.complete
GAAGTTATCAGTCGACATGACGGGCGCCAACATCGACTACGATTACCTGC
TCAAGTTCCTCGTCCTGGGCGACTCCGGCGTGGGAAAGACCTGCCTCCTC
TACCAGTACACGGATGGCCGGTTCCACACCCAGTTCATCTCCACTGTGGG
CATCGACTTCCGCGAAAAGCGGCTGCTGTACAACTCCCGCGGACGCCGCC
ACCGCATCCACCTGCAGATCTGGGACACCGCCGGACAGGAGCGCTTCCGT
TCACTAACCACGGCGTTTTACCGCGACGCCATGGGTTTCCTGCTCATCTT
CGACCTGACCAGCGAGAAGAGCTTCCTGGAGACGGCCAACTGGCTGTCGC
AGCTGCGGACGCACGCCTACTCCGAGGACCCCGACGTGGTCCTCTGCGGC
AACAAGTGCGACCTGCTGCAGCTGCGCGTGGTGAGTCGCGACCAGGTGGC
GGCCCTCTGCCGACGCTACCGGCTGCCGTACATCGAGACGAGCGCCTGCA
CCGGCGCCAACGTCAAGGAGGCCGTGGAGCTGCTGGTTGGCCGGGTCATG
GAGCGGATCGAGAACGCGGCCTGCAACCGCGAGTTCTCCCTGCTACTGAC
CCAGTCGCGATGCCTGCCGAACATCGCCTACGGTCAGCCGGAGGACCTGG
TGCGCCTCCACGATCGGCGAGAGGAGCCCTGCTCGCGGCGCAACTGCCGC
AACTGTTAGAAGCTTTCTAGACCAT

BS04292.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rab27-RC 693 CG14791-PC 1..693 17..709 3450 99.9 Plus
Rab27-RB 711 CG14791-PB 56..711 54..709 3265 99.8 Plus
RabX4-RA 642 CG31118-PA 175..274 212..311 185 79 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rab27-RC 1564 CG14791-RC 779..1471 17..709 3450 99.9 Plus
Rab27-RB 1466 CG14791-RB 718..1373 54..709 3265 99.8 Plus
RabX4-RA 1416 CG31118-RA 625..724 212..311 185 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1473977..1474511 709..175 2675 100 Minus
X 23542271 X 1474675..1474833 175..17 780 99.4 Minus
3R 32079331 3R 24827475..24827574 311..212 185 79 Minus
Blast to na_te.dros performed on 2014-11-27 13:58:51 has no hits.

BS04292.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:54 Download gff for BS04292.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 1..693 17..709 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:51:59 Download gff for BS04292.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 735..1431 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:20 Download gff for BS04292.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 735..1427 17..709 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:29 Download gff for BS04292.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 735..1427 17..709 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:39 Download gff for BS04292.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 779..1471 17..709 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:39 Download gff for BS04292.complete
Subject Subject Range Query Range Percent Splice Strand
X 1473977..1474510 176..709 100 <- Minus
X 1474675..1474833 17..175 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:20 Download gff for BS04292.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1368010..1368543 176..709 100 <- Minus
arm_X 1368708..1368866 17..175 99   Minus

BS04292.pep Sequence

Translation from 16 to 708

> BS04292.pep
MTGANIDYDYLLKFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFRE
KRLLYNSRGRRHRIHLQIWDTAGQERFRSLTTAFYRDAMGFLLIFDLTSE
KSFLETANWLSQLRTHAYSEDPDVVLCGNKCDLLQLRVVSRDQVAALCRR
YRLPYIETSACTGANVKEAVELLVGRVMERIENAACNREFSLLLTQSRCL
PNIAYGQPEDLVRLHDRREEPCSRRNCRNC*

BS04292.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rab27-PC 230 CG14791-PC 1..230 1..230 1215 100 Plus
Rab27-PB 236 CG14791-PB 19..236 13..230 1147 99.5 Plus
Rab8-PC 207 CG8287-PC 5..174 8..182 417 46.3 Plus
Rab8-PA 207 CG8287-PA 5..174 8..182 417 46.3 Plus
Rab10-PA 204 CG17060-PA 6..173 8..180 407 45.1 Plus