Clone Sequence Records
BS04292.3prime Sequence
723 bp (722 high quality bases) assembled on 2005-12-01
> BS04292.3prime
ATGGTCTAGAAAGCTTCTAACAGTTGCGGCAGTTGCGCCGCGAGCAGGGC
TCCTCTCGCCGATCGTGGAGGCGCACCAGGTCCTCCGGCTGACCGTAGGC
GATGTTCGGCAGGCATCGCGACTGGGTCAGTAGCAGGGAGAACTCGCGGT
TGCAGGCCGCGTTCTCGATCCGCTCCATGACCCGGCCAACCAGCAGCTCC
ACGGCCTCCTTGACGTTGGCGCCGGTGCAGGCGCTCGTCTCGATGTACGG
CAGCCGGTAGCGTCGGCAGAGGGCCGCCACCTGGTCGCGACTCACCACGC
GCAGCTGCAGCAGGTCGCACTTGTTGCCGCAGAGGACCACGTCGGGGTCC
TCGGAGTAGGCGTGCGTCCGCAGCTGCGACAGCCAGTTGGCCGTCTCCAG
GAAGCTCTTCTCGCTGGTCAGGTCGAAGATGAGCAGGAAACCCATGGCGT
CGCGGTAAAACGCCGTGGTTAGTGAACGGAAGCGCTCCTGTCCGGCGGTG
TCCCAGATCTGCAGGTGGATGCGGTGGCGGCGTCCGCGGGAGTTGTACAG
CAGCCGCTTTTCGCGGAAGTCGATGCCCACAGTGGAGATGAACTGGGTGT
GGAACCGGCCATCCGTGTACTGGTAGAGGAGGCAGGTCTTTCCCACGCCG
GAGTCGCCCAGGACGAGGAACTTGAGCAGGTAATCGTAGTCGATGTTGGC
GCCCGTCATGTCGACTGATAACT
BS04292.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14791-PC | 693 | Rab27-RC | 1..693 | 709..17 | 3440 | 99.8 | Minus |
CG14791-PB | 711 | Rab27-RB | 56..711 | 672..17 | 3255 | 99.8 | Minus |
CG9575-PA | 606 | Rab35-RA | 175..212 | 514..477 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:35:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab27-RC | 1564 | CG14791-RC | 779..1471 | 709..17 | 3450 | 99.9 | Minus |
Rab27-RB | 1466 | CG14791-RB | 718..1373 | 672..17 | 3265 | 99.8 | Minus |
RabX4-RA | 1416 | CG31118-RA | 625..724 | 514..415 | 185 | 79 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1473977..1474511 | 17..551 | 2675 | 100 | Plus |
X | 23542271 | X | 1474675..1474833 | 551..709 | 780 | 99.4 | Plus |
3R | 32079331 | 3R | 24827475..24827574 | 415..514 | 185 | 79 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:35:15 has no hits.
BS04292.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:49 Download gff for
BS04292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab27-PC | 1..693 | 17..709 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:03 Download gff for
BS04292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14791-PC | 1..693 | 17..709 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:11:25 Download gff for
BS04292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab27-RC | 735..1431 | 13..709 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:01:11 Download gff for
BS04292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab27-RC | 779..1475 | 13..709 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:01:11 Download gff for
BS04292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1473973..1474510 | 13..550 | 99 | <- | Plus |
X | 1474675..1474833 | 551..709 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:11:25 Download gff for
BS04292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1368006..1368543 | 13..550 | 99 | <- | Plus |
arm_X | 1368708..1368866 | 551..709 | 99 | | Plus |
BS04292.5prime Sequence
723 bp (722 high quality bases) assembled on 2005-12-01
> BS04292.5prime
GAAGTTATCAGTCGACATGACGGGCGCCAACATCGACTACGATTACCTGC
TCAAGTTCCTCGTCCTGGGCGACTCCGGCGTGGGAAAGACCTGCCTCCTC
TACCAGTACACGGATGGCCGGTTCCACACCCAGTTCATCTCCACTGTGGG
CATCGACTTCCGCGAAAAGCGGCTGCTGTACAACTCCCGCGGACGCCGCC
ACCGCATCCACCTGCAGATCTGGGACACCGCCGGACAGGAGCGCTTCCGT
TCACTAACCACGGCGTTTTACCGCGACGCCATGGGTTTCCTGCTCATCTT
CGACCTGACCAGCGAGAAGAGCTTCCTGGAGACGGCCAACTGGCTGTCGC
AGCTGCGGACGCACGCCTACTCCGAGGACCCCGACGTGGTCCTCTGCGGC
AACAAGTGCGACCTGCTGCAGCTGCGCGTGGTGAGTCGCGACCAGGTGGC
GGCCCTCTGCCGACGCTACCGGCTGCCGTACATCGAGACGAGCGCCTGCA
CCGGCGCCAACGTCAAGGAGGCCGTGGAGCTGCTGGTTGGCCGGGTCATG
GAGCGGATCGAGAACGCGGCCTGCAACCGCGAGTTCTCCCTGCTACTGAC
CCAGTCGCGATGCCTGCCGAACATCGCCTACGGTCAGCCGGAGGACCTGG
TGCGCCTCCACGATCGGCGAGAGGAGCCCTGCTCGCGGCGCAACTGCCGC
AACTGTTAGAAGCTTTCTAGACC
BS04292.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14791-PC | 693 | Rab27-RC | 1..693 | 17..709 | 3440 | 99.8 | Plus |
CG14791-PB | 711 | Rab27-RB | 56..711 | 54..709 | 3255 | 99.8 | Plus |
CG9575-PA | 606 | Rab35-RA | 175..212 | 212..249 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab27-RC | 1564 | CG14791-RC | 779..1471 | 17..709 | 3450 | 99.9 | Plus |
Rab27-RB | 1466 | CG14791-RB | 718..1373 | 54..709 | 3265 | 99.8 | Plus |
RabX4-RA | 1416 | CG31118-RA | 625..724 | 212..311 | 185 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1473977..1474511 | 709..175 | 2675 | 100 | Minus |
X | 23542271 | X | 1474675..1474833 | 175..17 | 780 | 99.4 | Minus |
3R | 32079331 | 3R | 24827475..24827574 | 311..212 | 185 | 79 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:23:38 has no hits.
BS04292.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:50 Download gff for
BS04292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab27-PC | 1..693 | 17..709 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:05 Download gff for
BS04292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14791-PC | 1..693 | 17..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:49:04 Download gff for
BS04292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab27-RC | 735..1431 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:29 Download gff for
BS04292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab27-RC | 779..1475 | 17..713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:29 Download gff for
BS04292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1473973..1474510 | 176..713 | 99 | <- | Minus |
X | 1474675..1474833 | 17..175 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:49:04 Download gff for
BS04292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1368006..1368543 | 176..713 | 99 | <- | Minus |
arm_X | 1368708..1368866 | 17..175 | 99 | | Minus |
BS04292.complete Sequence
725 bp assembled on 2007-10-17
GenBank Submission: FJ634917
> BS04292.complete
GAAGTTATCAGTCGACATGACGGGCGCCAACATCGACTACGATTACCTGC
TCAAGTTCCTCGTCCTGGGCGACTCCGGCGTGGGAAAGACCTGCCTCCTC
TACCAGTACACGGATGGCCGGTTCCACACCCAGTTCATCTCCACTGTGGG
CATCGACTTCCGCGAAAAGCGGCTGCTGTACAACTCCCGCGGACGCCGCC
ACCGCATCCACCTGCAGATCTGGGACACCGCCGGACAGGAGCGCTTCCGT
TCACTAACCACGGCGTTTTACCGCGACGCCATGGGTTTCCTGCTCATCTT
CGACCTGACCAGCGAGAAGAGCTTCCTGGAGACGGCCAACTGGCTGTCGC
AGCTGCGGACGCACGCCTACTCCGAGGACCCCGACGTGGTCCTCTGCGGC
AACAAGTGCGACCTGCTGCAGCTGCGCGTGGTGAGTCGCGACCAGGTGGC
GGCCCTCTGCCGACGCTACCGGCTGCCGTACATCGAGACGAGCGCCTGCA
CCGGCGCCAACGTCAAGGAGGCCGTGGAGCTGCTGGTTGGCCGGGTCATG
GAGCGGATCGAGAACGCGGCCTGCAACCGCGAGTTCTCCCTGCTACTGAC
CCAGTCGCGATGCCTGCCGAACATCGCCTACGGTCAGCCGGAGGACCTGG
TGCGCCTCCACGATCGGCGAGAGGAGCCCTGCTCGCGGCGCAACTGCCGC
AACTGTTAGAAGCTTTCTAGACCAT
BS04292.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab27-RC | 693 | CG14791-PC | 1..693 | 17..709 | 3450 | 99.9 | Plus |
Rab27-RB | 711 | CG14791-PB | 56..711 | 54..709 | 3265 | 99.8 | Plus |
RabX4-RA | 642 | CG31118-PA | 175..274 | 212..311 | 185 | 79 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab27-RC | 1564 | CG14791-RC | 779..1471 | 17..709 | 3450 | 99.9 | Plus |
Rab27-RB | 1466 | CG14791-RB | 718..1373 | 54..709 | 3265 | 99.8 | Plus |
RabX4-RA | 1416 | CG31118-RA | 625..724 | 212..311 | 185 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1473977..1474511 | 709..175 | 2675 | 100 | Minus |
X | 23542271 | X | 1474675..1474833 | 175..17 | 780 | 99.4 | Minus |
3R | 32079331 | 3R | 24827475..24827574 | 311..212 | 185 | 79 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:58:51 has no hits.
BS04292.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:54 Download gff for
BS04292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab27-RC | 1..693 | 17..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:51:59 Download gff for
BS04292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab27-RC | 735..1431 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:20 Download gff for
BS04292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab27-RC | 735..1427 | 17..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:29 Download gff for
BS04292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab27-RC | 735..1427 | 17..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:39 Download gff for
BS04292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab27-RC | 779..1471 | 17..709 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:39 Download gff for
BS04292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1473977..1474510 | 176..709 | 100 | <- | Minus |
X | 1474675..1474833 | 17..175 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:20 Download gff for
BS04292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1368010..1368543 | 176..709 | 100 | <- | Minus |
arm_X | 1368708..1368866 | 17..175 | 99 | | Minus |
BS04292.pep Sequence
Translation from 16 to 708
> BS04292.pep
MTGANIDYDYLLKFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFRE
KRLLYNSRGRRHRIHLQIWDTAGQERFRSLTTAFYRDAMGFLLIFDLTSE
KSFLETANWLSQLRTHAYSEDPDVVLCGNKCDLLQLRVVSRDQVAALCRR
YRLPYIETSACTGANVKEAVELLVGRVMERIENAACNREFSLLLTQSRCL
PNIAYGQPEDLVRLHDRREEPCSRRNCRNC*
BS04292.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab27-PC | 230 | CG14791-PC | 1..230 | 1..230 | 1215 | 100 | Plus |
Rab27-PB | 236 | CG14791-PB | 19..236 | 13..230 | 1147 | 99.5 | Plus |
Rab8-PC | 207 | CG8287-PC | 5..174 | 8..182 | 417 | 46.3 | Plus |
Rab8-PA | 207 | CG8287-PA | 5..174 | 8..182 | 417 | 46.3 | Plus |
Rab10-PA | 204 | CG17060-PA | 6..173 | 8..180 | 407 | 45.1 | Plus |