Clone Sequence Records
BS04293.3prime Sequence
504 bp (503 high quality bases) assembled on 2005-12-01
> BS04293.3prime
ATGGTCTAGAAAGCTTCTACGTATACTCACCGAGTCCGCGGGCAGCCACA
TCGGTGGCCACCAGTATCGAGTGCCGGCCATTGCGGAAGCTCGAGAGCAC
AAAGTCGCGCTCCTGCTGCGACTTATCGCCGTGGATGGCGCATGCGCGCC
AGCCCTGGCGGGAGATATTGCGCGTGATCTCGTCCACACGCTTCTTGGTT
TCCACGAAAATGATGGTCTTGGTCTCGTTCTCCGCCGAGATGTCTGTTAG
CAGCTTGATCAGCTTCATCAATTTCTCATTCTCATCGCACACGTCCACGA
TCTGGAGGATGTTGTGATTGGCGCTCAGCGAAAGCGAACCAATGTTCACC
TGTATGTAGTTATTAAGGAATTCCTCGGCCAGCTGGCGCACCTCTTTGGG
CCAGGTAGCTGACCACATGAGTACCTGACGGTCCGGTCGGATCTGCTGCA
TGATCTTTCTGATCTGGGGCTCGAAGCCCATGTCGAGCATGTCGACTGAT
AACT
BS04293.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-PB | 474 | CG10077-RB | 1..474 | 490..17 | 2370 | 100 | Minus |
| CG10077-PA | 2457 | CG10077-RA | 946..1405 | 490..31 | 2300 | 100 | Minus |
| CG10279-PD | 1728 | Rm62-RD | 892..924 | 484..452 | 165 | 100 | Minus |
| CG10279-PC | 1737 | Rm62-RC | 901..933 | 484..452 | 165 | 100 | Minus |
| CG10279-PB | 1737 | Rm62-RB | 901..933 | 484..452 | 165 | 100 | Minus |
| CG10279-PE | 1737 | Rm62-RE | 901..933 | 484..452 | 165 | 100 | Minus |
| CG10279-PF | 1737 | Rm62-RF | 901..933 | 484..452 | 165 | 100 | Minus |
| CG10279-PA | 2160 | Rm62-RA | 1324..1356 | 484..452 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-RC | 3634 | CG10077-RC | 1206..1679 | 490..17 | 2370 | 100 | Minus |
| CG10077-RD | 3420 | CG10077-RD | 1070..1529 | 490..31 | 2300 | 100 | Minus |
| CG10077-RA | 3543 | CG10077-RA | 1193..1652 | 490..31 | 2300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6953759..6954232 | 17..490 | 2370 | 100 | Plus |
| 3R | 32079331 | 3R | 6004034..6004244 | 281..491 | 395 | 79.1 | Plus |
| X | 23542271 | X | 7929009..7929112 | 388..491 | 265 | 83.7 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:43:15 has no hits.
BS04293.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:51 Download gff for
BS04293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-PB | 1..474 | 17..490 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:06 Download gff for
BS04293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-PB | 1..474 | 17..490 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:30 Download gff for
BS04293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RC | 1202..1684 | 10..495 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:38:00 Download gff for
BS04293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RC | 1202..1684 | 10..495 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:38:00 Download gff for
BS04293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6953754..6954236 | 10..495 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:30 Download gff for
BS04293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6946854..6947336 | 10..495 | 98 | | Plus |
BS04293.5prime Sequence
504 bp (503 high quality bases) assembled on 2005-11-29
> BS04293.5prime
GAAGTTATCAGTCGACATGCTCGACATGGGCTTCGAGCCCCAGATCAGAA
AGATCATGCAGCAGATCCGACCGGACCGTCAGGTACTCATGTGGTCAGCT
ACCTGGCCCAAAGAGGTGCGCCAGCTGGCCGAGGAATTCCTTAATAACTA
CATACAGGTGAACATTGGTTCGCTTTCGCTGAGCGCCAATCACAACATCC
TCCAGATCGTGGACGTGTGCGATGAGAATGAGAAATTGATGAAGCTGATC
AAGCTGCTAACAGACATCTCGGCGGAGAACGAGACCAAGACCATCATTTT
CGTGGAAACCAAGAAGCGTGTGGACGAGATCACGCGCAATATCTCCCGCC
AGGGCTGGCGCGCATGCGCCATCCACGGCGATAAGTCGCAGCAGGAGCGC
GACTTTGTGCTCTCGAGCTTCCGCAATGGCCGGCACTCGATACTGGTGGC
CACCGATGTGGCTGCCCGCGGACTCGGTGAGTATACGTAGAAGCTTTCTA
GACC
BS04293.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-PB | 474 | CG10077-RB | 1..474 | 17..490 | 2370 | 100 | Plus |
| CG10077-PA | 2457 | CG10077-RA | 946..1405 | 17..476 | 2300 | 100 | Plus |
| CG10279-PD | 1728 | Rm62-RD | 892..924 | 23..55 | 165 | 100 | Plus |
| CG10279-PC | 1737 | Rm62-RC | 901..933 | 23..55 | 165 | 100 | Plus |
| CG10279-PB | 1737 | Rm62-RB | 901..933 | 23..55 | 165 | 100 | Plus |
| CG10279-PE | 1737 | Rm62-RE | 901..933 | 23..55 | 165 | 100 | Plus |
| CG10279-PF | 1737 | Rm62-RF | 901..933 | 23..55 | 165 | 100 | Plus |
| CG10279-PA | 2160 | Rm62-RA | 1324..1356 | 23..55 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-RC | 3634 | CG10077-RC | 1206..1679 | 17..490 | 2370 | 100 | Plus |
| CG10077-RD | 3420 | CG10077-RD | 1070..1529 | 17..476 | 2300 | 100 | Plus |
| CG10077-RA | 3543 | CG10077-RA | 1193..1652 | 17..476 | 2300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6953759..6954232 | 490..17 | 2370 | 100 | Minus |
| 3R | 32079331 | 3R | 6004034..6004244 | 226..16 | 395 | 79.1 | Minus |
| X | 23542271 | X | 7929009..7929112 | 119..16 | 265 | 83.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:47:01 has no hits.
BS04293.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:52 Download gff for
BS04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-PB | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:08 Download gff for
BS04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-PB | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:52:30 Download gff for
BS04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RC | 1202..1684 | 12..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:01 Download gff for
BS04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RC | 1202..1684 | 12..497 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:01 Download gff for
BS04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6953754..6954236 | 12..497 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:52:30 Download gff for
BS04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6946854..6947336 | 12..497 | 98 | | Minus |
BS04293.complete Sequence
506 bp (506 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634918
> BS04293.complete
GAAGTTATCAGTCGACATGCTCGACATGGGCTTCGAGCCCCAGATCAGAA
AGATCATGCAGCAGATCCGACCGGACCGTCAGGTACTCATGTGGTCAGCT
ACCTGGCCCAAAGAGGTGCGCCAGCTGGCCGAGGAATTCCTTAATAACTA
CATACAGGTGAACATTGGTTCGCTTTCGCTGAGCGCCAATCACAACATCC
TCCAGATCGTGGACGTGTGCGATGAGAATGAGAAATTGATGAAGCTGATC
AAGCTGCTAACAGACATCTCGGCGGAGAACGAGACCAAGACCATCATTTT
CGTGGAAACCAAGAAGCGTGTGGACGAGATCACGCGCAATATCTCCCGCC
AGGGCTGGCGCGCATGCGCCATCCACGGCGATAAGTCGCAGCAGGAGCGC
GACTTTGTGCTCTCGAGCTTCCGCAATGGCCGGCACTCGATACTGGTGGC
CACCGATGTGGCTGCCCGCGGACTCGGTGAGTATACGTAGAAGCTTTCTA
GACCAT
BS04293.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-RC | 1419 | CG10077-PC | 946..1419 | 17..490 | 2370 | 100 | Plus |
| CG10077-RD | 2457 | CG10077-PD | 946..1405 | 17..476 | 2300 | 100 | Plus |
| CG10077-RA | 2457 | CG10077-PA | 946..1405 | 17..476 | 2300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-RC | 3634 | CG10077-RC | 1206..1679 | 17..490 | 2370 | 100 | Plus |
| CG10077-RD | 3420 | CG10077-RD | 1070..1529 | 17..476 | 2300 | 100 | Plus |
| CG10077-RA | 3543 | CG10077-RA | 1193..1652 | 17..476 | 2300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6953759..6954232 | 490..17 | 2370 | 100 | Minus |
| 3R | 32079331 | 3R | 6004034..6004244 | 226..16 | 395 | 79.1 | Minus |
| X | 23542271 | X | 7929009..7929112 | 119..16 | 265 | 83.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:21:50 has no hits.
BS04293.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:34 Download gff for
BS04293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RB | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:39 Download gff for
BS04293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RB | 15..497 | 12..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:16 Download gff for
BS04293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RC | 1206..1679 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:34 Download gff for
BS04293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RB | 15..497 | 12..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:50 Download gff for
BS04293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RC | 1206..1679 | 17..490 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:50 Download gff for
BS04293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6953759..6954232 | 17..490 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:16 Download gff for
BS04293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6946859..6947332 | 17..490 | 100 | | Minus |
BS04293.pep Sequence
Translation from 16 to 489
> BS04293.pep
MLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNI
GSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKK
RVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAA
RGLGEYT*
BS04293.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-PC | 472 | CG10077-PC | 316..472 | 1..157 | 802 | 100 | Plus |
| CG10077-PD | 818 | CG10077-PD | 316..468 | 1..153 | 779 | 100 | Plus |
| CG10077-PA | 818 | CG10077-PA | 316..468 | 1..153 | 779 | 100 | Plus |
| Rm62-PJ | 458 | CG10279-PJ | 296..453 | 1..156 | 557 | 71.5 | Plus |
| Rm62-PK | 485 | CG10279-PK | 296..454 | 1..157 | 548 | 71.1 | Plus |
