Clone BS04296 Report

Search the DGRC for BS04296

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptpUf68-RF
Protein status:BS04296.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04296.3prime Sequence

885 bp (785 high quality bases) assembled on 2005-12-01

> BS04296.3prime
ATGGTCTAGAAAGCTTCTAACCGGACAGATCTCCCTGATCGAAGATGCCC
TGGTCGTAGAGCTCGGCCACCACTCTCCGACCGCCGAAGAACCGGCCGTC
GAGTGCCTCCTTGCCCCGCATGGCCTCCGCTCCTGCCGAGAACTCCACGA
AGATCTTCACGATGATCTCCGCCTCGTCGTCGTCCTCGTTCTCCGTCTGC
TTCTCGTTGAAGATGATCACGCGACTGACGGTGCCGAATTTACTGCACTC
CTCCTGGATCTCCTCCTGCAGGGTCTCGTCCACATCCTCGGGTCCGACCA
TATTTCGCAGGATGATTACACGTGAGTCCACCGGCCGCATCAGTCGCTGC
ATTACCAACTGCCGCGCGCTCTGGCCCTTGATGGACATGTTCTCCTGCTG
CTGCAGCGTCTGCACGTCGCCCTCATCCATCAGCTTCTTCTGCAGCTCCT
CCTGCTGCTTCTCGTGCGCCTTCTTGATGTTCTCCGAGAGATTTGCTGCC
GTGACAGCGGCATTGTTTGCAGCGGCAGAGAGGGCGGCAGCAGCTGCAGC
TCCTTTGCTGGCCTCCGCTCCCGCCAGAGTGGCCACAGTGGGCACTAAGC
CCACGCCAACGCCGCCGACCGTCATGGGCAGGGTGGGTGTGGCCAGAAGG
GCGGGCGGCGGAAGAGTGGGCACTACCGCCTGTAGAGGTTGCAGGCCAGC
AGGAACCCCAAGCAAACTGGGAGCCACCGGAGTTGGTGCCTGGAATATTC
CGGGCGGCAGAAGAGCGGGAGCGGCTTGAGCCAAAGCAGGATGCAGAGCA
GCCGCGGATGTGGCTGCCGAAACCACTGGCATTGCACCCACCTTAGTGAC
CACTGCTCCAGCTGCCATGACAGGAGTGTTCTGCG

BS04296.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12085-PC 1638 pUf68-RC 770..1638 885..17 4345 100 Minus
CG12085-PD 1638 pUf68-RD 770..1638 885..17 4345 100 Minus
CG12085-PA 1914 pUf68-RA 1046..1914 885..17 4345 100 Minus
CG12085-PB 1638 pUf68-RB 770..1638 885..17 4345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
pUf68-RJ 2447 CG12085-RJ 1219..2090 885..14 4360 100 Minus
pUf68-RI 3081 CG12085-RI 1853..2724 885..14 4360 100 Minus
pUf68-RH 4455 CG12085-RH 3227..4098 885..14 4360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1497210..1498081 14..885 4360 100 Plus
Blast to na_te.dros performed on 2015-02-03 13:15:30 has no hits.

BS04296.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:53 Download gff for BS04296.3prime
Subject Subject Range Query Range Percent Splice Strand
pUf68-PD 770..1638 17..885 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:09 Download gff for BS04296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12085-PB 770..1638 17..885 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:58:27 Download gff for BS04296.3prime
Subject Subject Range Query Range Percent Splice Strand
pUf68-RH 3227..4098 14..885 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:48:01 Download gff for BS04296.3prime
Subject Subject Range Query Range Percent Splice Strand
pUf68-RH 3227..4098 14..885 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:48:01 Download gff for BS04296.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1497210..1498081 14..885 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:58:27 Download gff for BS04296.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1497210..1498081 14..885 100   Plus

BS04296.5prime Sequence

826 bp (785 high quality bases) assembled on 2005-11-29

> BS04296.5prime
GAAGTTATCAGTCGACATGGAGCAGAGCATCAAGATGGTGTTGATGAAGC
AGACACTGGCCCACCAACAGCAGCAATTGGCCACTCAGCGCACGCAGGTT
CAGCGACAACAGGCACTGGCTCTCATGTGCAGAGTCTACGTGGGCAGCAT
TTCGTTTGAGCTCAAGGAGGACACAATTCGTGTGGCCTTCACTCCCTTCG
GCCCCATCAAATCAATCAACATGTCCTGGGATCCCATCACGCAAAAGCAC
AAGGGATTCGCGTTCGTGGAGTATGAGATACCGGAGGGCGCACAGCTGGC
GCTGGAACAGATGAACGGAGCCCTGATGGGGGGCAGGAACATCAAGGTAG
GCCGACCCAGTAACATGCCACAGGCGCAGCAGGTGATCGACGAGGTGCAG
GAGGAGGCCAAGAGCTTCAACCGCATCTACGTGGCCTCCATCCATCCCGA
CCTTTCCGAGGAGGACATCAAGAGCGTCTTCGAGGCCTTTGGCCCGATCC
TCTACTGCAAGCTGGCCCAGGGCACTTCCCTTCACACGCACAAGGGCTAC
GGCTTCATCGAGTACGCCAACAAACAGGCCATGGACGAGGCAATCGCCAG
CATGAATCTCTTTGATTTGGGAGGCCAGCTTCTGAGAGTGGGTCGATCTA
TTACGCCGCCGAATGCCCTGGCCTGTCCCACAACGAACTCCACGATGCCC
ACGGCTGCGGCAGTGGCTGCAGCGGCAGCAACGGCAAAGATCCAAGCCCT
GGACGCGGTGGCCAGCAATGCGGTTCTTGGTTTGTCGCAGAACACTCCTG
TCATGGCAGCTGGAGCAGTGGTCACT

BS04296.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12085-PA 1914 pUf68-RA 276..1086 16..826 4055 100 Plus
CG12085-PC 1638 pUf68-RC 1..810 17..826 4050 100 Plus
CG12085-PD 1638 pUf68-RD 1..810 17..826 4050 100 Plus
CG12085-PB 1638 pUf68-RB 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
pUf68-RJ 2447 CG12085-RJ 449..1259 16..826 4055 100 Plus
pUf68-RI 3081 CG12085-RI 1083..1893 16..826 4055 100 Plus
pUf68-RH 4455 CG12085-RH 2457..3267 16..826 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1498293..1498798 636..131 2530 100 Minus
3L 28110227 3L 1498041..1498232 826..635 960 100 Minus
3L 28110227 3L 1499043..1499159 132..16 585 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:58:41 has no hits.

BS04296.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:54 Download gff for BS04296.5prime
Subject Subject Range Query Range Percent Splice Strand
pUf68-PA 269..1086 10..826 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:11 Download gff for BS04296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12085-PA 269..1086 10..826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:45 Download gff for BS04296.5prime
Subject Subject Range Query Range Percent Splice Strand
pUf68-RH 2450..3267 10..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:37:28 Download gff for BS04296.5prime
Subject Subject Range Query Range Percent Splice Strand
pUf68-RH 2450..3267 10..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:37:28 Download gff for BS04296.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1498041..1498230 637..826 100 <- Minus
3L 1498293..1498796 133..636 100 <- Minus
3L 1499043..1499166 10..132 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:45 Download gff for BS04296.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1498041..1498230 637..826 100 <- Minus
arm_3L 1498293..1498796 133..636 100 <- Minus
arm_3L 1499043..1499166 10..132 98   Minus

BS04296.complete Sequence

1670 bp (1670 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634919

> BS04296.complete
GAAGTTATCAGTCGACATGGAGCAGAGCATCAAGATGGTGTTGATGAAGC
AGACACTGGCCCACCAACAGCAGCAATTGGCCACTCAGCGCACGCAGGTT
CAGCGACAACAGGCACTGGCTCTCATGTGCAGAGTCTACGTGGGCAGCAT
TTCGTTTGAGCTCAAGGAGGACACAATTCGTGTGGCCTTCACTCCCTTCG
GCCCCATCAAATCAATCAACATGTCCTGGGATCCCATCACGCAAAAGCAC
AAGGGATTCGCGTTCGTGGAGTATGAGATACCGGAGGGCGCACAGCTGGC
GCTGGAACAGATGAACGGAGCCCTGATGGGGGGCAGGAACATCAAGGTAG
GCCGACCCAGTAACATGCCACAGGCGCAGCAGGTGATCGACGAGGTGCAG
GAGGAGGCCAAGAGCTTCAACCGCATCTACGTGGCCTCCATCCATCCCGA
CCTTTCCGAGGAGGACATCAAGAGCGTCTTCGAGGCCTTTGGCCCGATCC
TCTACTGCAAGCTGGCCCAGGGCACTTCCCTTCACACGCACAAGGGCTAC
GGCTTCATCGAGTACGCCAACAAACAGGCCATGGACGAGGCAATCGCCAG
CATGAATCTCTTTGATTTGGGAGGCCAGCTTCTGAGAGTGGGTCGATCTA
TTACGCCGCCGAATGCCCTGGCCTGTCCCACAACGAACTCCACGATGCCC
ACGGCTGCGGCAGTGGCTGCAGCGGCAGCAACGGCAAAGATCCAAGCCCT
GGACGCGGTGGCCAGCAATGCGGTTCTTGGTTTGTCGCAGAACACTCCTG
TCATGGCAGCTGGAGCAGTGGTCACTAAGGTGGGTGCAATGCCAGTGGTT
TCGGCAGCCACATCCGCGGCTGCTCTGCATCCTGCTTTGGCTCAAGCCGC
TCCCGCTCTTCTGCCGCCCGGAATATTCCAGGCACCAACTCCGGTGGCTC
CCAGTTTGCTTGGGGTTCCTGCTGGCCTGCAACCTCTACAGGCGGTAGTG
CCCACTCTTCCGCCGCCCGCCCTTCTGGCCACACCCACCCTGCCCATGAC
GGTCGGCGGCGTTGGCGTGGGCTTAGTGCCCACTGTGGCCACTCTGGCGG
GAGCGGAGGCCAGCAAAGGAGCTGCAGCTGCTGCCGCCCTCTCTGCCGCT
GCAAACAATGCCGCTGTCACGGCAGCAAATCTCTCGGAGAACATCAAGAA
GGCGCACGAGAAGCAGCAGGAGGAGCTGCAGAAGAAGCTGATGGATGAGG
GCGACGTGCAGACGCTGCAGCAGCAGGAGAACATGTCCATCAAGGGCCAG
AGCGCGCGGCAGTTGGTAATGCAGCGACTGATGCGGCCGGTGGACTCACG
TGTAATCATCCTGCGAAATATGGTCGGACCCGAGGATGTGGACGAGACCC
TGCAGGAGGAGATCCAGGAGGAGTGCAGTAAATTCGGCACCGTCAGTCGC
GTGATCATCTTCAACGAGAAGCAGACGGAGAACGAGGACGACGACGAGGC
GGAGATCATCGTGAAGATCTTCGTGGAGTTCTCGGCAGGAGCGGAGGCCA
TGCGGGGCAAGGAGGCACTCGACGGCCGGTTCTTCGGCGGTCGGAGAGTG
GTGGCCGAGCTCTACGACCAGGGCATCTTCGATCAGGGAGATCTGTCCGG
TTAGAAGCTTTCTAGACCAT

BS04296.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
pUf68-RA 1914 CG12085-PA 276..1914 16..1654 8195 100 Plus
pUf68-RJ 1638 CG12085-PJ 1..1638 17..1654 8190 100 Plus
pUf68-RI 1638 CG12085-PI 1..1638 17..1654 8190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
pUf68-RJ 2447 CG12085-RJ 449..2090 16..1657 8210 100 Plus
pUf68-RI 3081 CG12085-RI 1083..2724 16..1657 8210 100 Plus
pUf68-RH 4455 CG12085-RH 2457..4098 16..1657 8210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1497210..1498232 1657..635 5115 100 Minus
3L 28110227 3L 1498293..1498798 636..131 2530 100 Minus
3L 28110227 3L 1499043..1499159 132..16 585 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:39:08 has no hits.

BS04296.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:24 Download gff for BS04296.complete
Subject Subject Range Query Range Percent Splice Strand
pUf68-RA 269..1914 10..1654 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:40 Download gff for BS04296.complete
Subject Subject Range Query Range Percent Splice Strand
pUf68-RA 398..2046 10..1657 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:12 Download gff for BS04296.complete
Subject Subject Range Query Range Percent Splice Strand
pUf68-RH 2458..4095 17..1654 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:24 Download gff for BS04296.complete
Subject Subject Range Query Range Percent Splice Strand
pUf68-RA 377..2025 10..1657 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:48 Download gff for BS04296.complete
Subject Subject Range Query Range Percent Splice Strand
pUf68-RH 2458..4095 17..1654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:48 Download gff for BS04296.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1497213..1498230 637..1654 100 <- Minus
3L 1498293..1498796 133..636 100 <- Minus
3L 1499043..1499158 17..132 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:12 Download gff for BS04296.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1497213..1498230 637..1654 100 <- Minus
arm_3L 1498293..1498796 133..636 100 <- Minus
arm_3L 1499043..1499158 17..132 100   Minus

BS04296.pep Sequence

Translation from 16 to 1653

> BS04296.pep
MEQSIKMVLMKQTLAHQQQQLATQRTQVQRQQALALMCRVYVGSISFELK
EDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMN
GALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEED
IKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFD
LGGQLLRVGRSITPPNALACPTTNSTMPTAAAVAAAAATAKIQALDAVAS
NAVLGLSQNTPVMAAGAVVTKVGAMPVVSAATSAAALHPALAQAAPALLP
PGIFQAPTPVAPSLLGVPAGLQPLQAVVPTLPPPALLATPTLPMTVGGVG
VGLVPTVATLAGAEASKGAAAAAALSAAANNAAVTAANLSENIKKAHEKQ
QEELQKKLMDEGDVQTLQQQENMSIKGQSARQLVMQRLMRPVDSRVIILR
NMVGPEDVDETLQEEIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVK
IFVEFSAGAEAMRGKEALDGRFFGGRRVVAELYDQGIFDQGDLSG*

BS04296.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
pUf68-PJ 545 CG12085-PJ 1..545 1..545 2716 100 Plus
pUf68-PI 545 CG12085-PI 1..545 1..545 2716 100 Plus
pUf68-PH 545 CG12085-PH 1..545 1..545 2716 100 Plus
pUf68-PG 545 CG12085-PG 1..545 1..545 2716 100 Plus
pUf68-PF 545 CG12085-PF 1..545 1..545 2716 100 Plus