Clone Sequence Records
BS04296.3prime Sequence
885 bp (785 high quality bases) assembled on 2005-12-01
> BS04296.3prime
ATGGTCTAGAAAGCTTCTAACCGGACAGATCTCCCTGATCGAAGATGCCC
TGGTCGTAGAGCTCGGCCACCACTCTCCGACCGCCGAAGAACCGGCCGTC
GAGTGCCTCCTTGCCCCGCATGGCCTCCGCTCCTGCCGAGAACTCCACGA
AGATCTTCACGATGATCTCCGCCTCGTCGTCGTCCTCGTTCTCCGTCTGC
TTCTCGTTGAAGATGATCACGCGACTGACGGTGCCGAATTTACTGCACTC
CTCCTGGATCTCCTCCTGCAGGGTCTCGTCCACATCCTCGGGTCCGACCA
TATTTCGCAGGATGATTACACGTGAGTCCACCGGCCGCATCAGTCGCTGC
ATTACCAACTGCCGCGCGCTCTGGCCCTTGATGGACATGTTCTCCTGCTG
CTGCAGCGTCTGCACGTCGCCCTCATCCATCAGCTTCTTCTGCAGCTCCT
CCTGCTGCTTCTCGTGCGCCTTCTTGATGTTCTCCGAGAGATTTGCTGCC
GTGACAGCGGCATTGTTTGCAGCGGCAGAGAGGGCGGCAGCAGCTGCAGC
TCCTTTGCTGGCCTCCGCTCCCGCCAGAGTGGCCACAGTGGGCACTAAGC
CCACGCCAACGCCGCCGACCGTCATGGGCAGGGTGGGTGTGGCCAGAAGG
GCGGGCGGCGGAAGAGTGGGCACTACCGCCTGTAGAGGTTGCAGGCCAGC
AGGAACCCCAAGCAAACTGGGAGCCACCGGAGTTGGTGCCTGGAATATTC
CGGGCGGCAGAAGAGCGGGAGCGGCTTGAGCCAAAGCAGGATGCAGAGCA
GCCGCGGATGTGGCTGCCGAAACCACTGGCATTGCACCCACCTTAGTGAC
CACTGCTCCAGCTGCCATGACAGGAGTGTTCTGCG
BS04296.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12085-PC | 1638 | pUf68-RC | 770..1638 | 885..17 | 4345 | 100 | Minus |
CG12085-PD | 1638 | pUf68-RD | 770..1638 | 885..17 | 4345 | 100 | Minus |
CG12085-PA | 1914 | pUf68-RA | 1046..1914 | 885..17 | 4345 | 100 | Minus |
CG12085-PB | 1638 | pUf68-RB | 770..1638 | 885..17 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pUf68-RJ | 2447 | CG12085-RJ | 1219..2090 | 885..14 | 4360 | 100 | Minus |
pUf68-RI | 3081 | CG12085-RI | 1853..2724 | 885..14 | 4360 | 100 | Minus |
pUf68-RH | 4455 | CG12085-RH | 3227..4098 | 885..14 | 4360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1497210..1498081 | 14..885 | 4360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:15:30 has no hits.
BS04296.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:53 Download gff for
BS04296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pUf68-PD | 770..1638 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:09 Download gff for
BS04296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12085-PB | 770..1638 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:58:27 Download gff for
BS04296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pUf68-RH | 3227..4098 | 14..885 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:48:01 Download gff for
BS04296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pUf68-RH | 3227..4098 | 14..885 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:48:01 Download gff for
BS04296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1497210..1498081 | 14..885 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:58:27 Download gff for
BS04296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1497210..1498081 | 14..885 | 100 | | Plus |
BS04296.5prime Sequence
826 bp (785 high quality bases) assembled on 2005-11-29
> BS04296.5prime
GAAGTTATCAGTCGACATGGAGCAGAGCATCAAGATGGTGTTGATGAAGC
AGACACTGGCCCACCAACAGCAGCAATTGGCCACTCAGCGCACGCAGGTT
CAGCGACAACAGGCACTGGCTCTCATGTGCAGAGTCTACGTGGGCAGCAT
TTCGTTTGAGCTCAAGGAGGACACAATTCGTGTGGCCTTCACTCCCTTCG
GCCCCATCAAATCAATCAACATGTCCTGGGATCCCATCACGCAAAAGCAC
AAGGGATTCGCGTTCGTGGAGTATGAGATACCGGAGGGCGCACAGCTGGC
GCTGGAACAGATGAACGGAGCCCTGATGGGGGGCAGGAACATCAAGGTAG
GCCGACCCAGTAACATGCCACAGGCGCAGCAGGTGATCGACGAGGTGCAG
GAGGAGGCCAAGAGCTTCAACCGCATCTACGTGGCCTCCATCCATCCCGA
CCTTTCCGAGGAGGACATCAAGAGCGTCTTCGAGGCCTTTGGCCCGATCC
TCTACTGCAAGCTGGCCCAGGGCACTTCCCTTCACACGCACAAGGGCTAC
GGCTTCATCGAGTACGCCAACAAACAGGCCATGGACGAGGCAATCGCCAG
CATGAATCTCTTTGATTTGGGAGGCCAGCTTCTGAGAGTGGGTCGATCTA
TTACGCCGCCGAATGCCCTGGCCTGTCCCACAACGAACTCCACGATGCCC
ACGGCTGCGGCAGTGGCTGCAGCGGCAGCAACGGCAAAGATCCAAGCCCT
GGACGCGGTGGCCAGCAATGCGGTTCTTGGTTTGTCGCAGAACACTCCTG
TCATGGCAGCTGGAGCAGTGGTCACT
BS04296.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12085-PA | 1914 | pUf68-RA | 276..1086 | 16..826 | 4055 | 100 | Plus |
CG12085-PC | 1638 | pUf68-RC | 1..810 | 17..826 | 4050 | 100 | Plus |
CG12085-PD | 1638 | pUf68-RD | 1..810 | 17..826 | 4050 | 100 | Plus |
CG12085-PB | 1638 | pUf68-RB | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pUf68-RJ | 2447 | CG12085-RJ | 449..1259 | 16..826 | 4055 | 100 | Plus |
pUf68-RI | 3081 | CG12085-RI | 1083..1893 | 16..826 | 4055 | 100 | Plus |
pUf68-RH | 4455 | CG12085-RH | 2457..3267 | 16..826 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1498293..1498798 | 636..131 | 2530 | 100 | Minus |
3L | 28110227 | 3L | 1498041..1498232 | 826..635 | 960 | 100 | Minus |
3L | 28110227 | 3L | 1499043..1499159 | 132..16 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:58:41 has no hits.
BS04296.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:54 Download gff for
BS04296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pUf68-PA | 269..1086 | 10..826 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:11 Download gff for
BS04296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12085-PA | 269..1086 | 10..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:45 Download gff for
BS04296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pUf68-RH | 2450..3267 | 10..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:37:28 Download gff for
BS04296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pUf68-RH | 2450..3267 | 10..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:37:28 Download gff for
BS04296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1498041..1498230 | 637..826 | 100 | <- | Minus |
3L | 1498293..1498796 | 133..636 | 100 | <- | Minus |
3L | 1499043..1499166 | 10..132 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:45 Download gff for
BS04296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1498041..1498230 | 637..826 | 100 | <- | Minus |
arm_3L | 1498293..1498796 | 133..636 | 100 | <- | Minus |
arm_3L | 1499043..1499166 | 10..132 | 98 | | Minus |
BS04296.complete Sequence
1670 bp (1670 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634919
> BS04296.complete
GAAGTTATCAGTCGACATGGAGCAGAGCATCAAGATGGTGTTGATGAAGC
AGACACTGGCCCACCAACAGCAGCAATTGGCCACTCAGCGCACGCAGGTT
CAGCGACAACAGGCACTGGCTCTCATGTGCAGAGTCTACGTGGGCAGCAT
TTCGTTTGAGCTCAAGGAGGACACAATTCGTGTGGCCTTCACTCCCTTCG
GCCCCATCAAATCAATCAACATGTCCTGGGATCCCATCACGCAAAAGCAC
AAGGGATTCGCGTTCGTGGAGTATGAGATACCGGAGGGCGCACAGCTGGC
GCTGGAACAGATGAACGGAGCCCTGATGGGGGGCAGGAACATCAAGGTAG
GCCGACCCAGTAACATGCCACAGGCGCAGCAGGTGATCGACGAGGTGCAG
GAGGAGGCCAAGAGCTTCAACCGCATCTACGTGGCCTCCATCCATCCCGA
CCTTTCCGAGGAGGACATCAAGAGCGTCTTCGAGGCCTTTGGCCCGATCC
TCTACTGCAAGCTGGCCCAGGGCACTTCCCTTCACACGCACAAGGGCTAC
GGCTTCATCGAGTACGCCAACAAACAGGCCATGGACGAGGCAATCGCCAG
CATGAATCTCTTTGATTTGGGAGGCCAGCTTCTGAGAGTGGGTCGATCTA
TTACGCCGCCGAATGCCCTGGCCTGTCCCACAACGAACTCCACGATGCCC
ACGGCTGCGGCAGTGGCTGCAGCGGCAGCAACGGCAAAGATCCAAGCCCT
GGACGCGGTGGCCAGCAATGCGGTTCTTGGTTTGTCGCAGAACACTCCTG
TCATGGCAGCTGGAGCAGTGGTCACTAAGGTGGGTGCAATGCCAGTGGTT
TCGGCAGCCACATCCGCGGCTGCTCTGCATCCTGCTTTGGCTCAAGCCGC
TCCCGCTCTTCTGCCGCCCGGAATATTCCAGGCACCAACTCCGGTGGCTC
CCAGTTTGCTTGGGGTTCCTGCTGGCCTGCAACCTCTACAGGCGGTAGTG
CCCACTCTTCCGCCGCCCGCCCTTCTGGCCACACCCACCCTGCCCATGAC
GGTCGGCGGCGTTGGCGTGGGCTTAGTGCCCACTGTGGCCACTCTGGCGG
GAGCGGAGGCCAGCAAAGGAGCTGCAGCTGCTGCCGCCCTCTCTGCCGCT
GCAAACAATGCCGCTGTCACGGCAGCAAATCTCTCGGAGAACATCAAGAA
GGCGCACGAGAAGCAGCAGGAGGAGCTGCAGAAGAAGCTGATGGATGAGG
GCGACGTGCAGACGCTGCAGCAGCAGGAGAACATGTCCATCAAGGGCCAG
AGCGCGCGGCAGTTGGTAATGCAGCGACTGATGCGGCCGGTGGACTCACG
TGTAATCATCCTGCGAAATATGGTCGGACCCGAGGATGTGGACGAGACCC
TGCAGGAGGAGATCCAGGAGGAGTGCAGTAAATTCGGCACCGTCAGTCGC
GTGATCATCTTCAACGAGAAGCAGACGGAGAACGAGGACGACGACGAGGC
GGAGATCATCGTGAAGATCTTCGTGGAGTTCTCGGCAGGAGCGGAGGCCA
TGCGGGGCAAGGAGGCACTCGACGGCCGGTTCTTCGGCGGTCGGAGAGTG
GTGGCCGAGCTCTACGACCAGGGCATCTTCGATCAGGGAGATCTGTCCGG
TTAGAAGCTTTCTAGACCAT
BS04296.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pUf68-RA | 1914 | CG12085-PA | 276..1914 | 16..1654 | 8195 | 100 | Plus |
pUf68-RJ | 1638 | CG12085-PJ | 1..1638 | 17..1654 | 8190 | 100 | Plus |
pUf68-RI | 1638 | CG12085-PI | 1..1638 | 17..1654 | 8190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pUf68-RJ | 2447 | CG12085-RJ | 449..2090 | 16..1657 | 8210 | 100 | Plus |
pUf68-RI | 3081 | CG12085-RI | 1083..2724 | 16..1657 | 8210 | 100 | Plus |
pUf68-RH | 4455 | CG12085-RH | 2457..4098 | 16..1657 | 8210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1497210..1498232 | 1657..635 | 5115 | 100 | Minus |
3L | 28110227 | 3L | 1498293..1498798 | 636..131 | 2530 | 100 | Minus |
3L | 28110227 | 3L | 1499043..1499159 | 132..16 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:39:08 has no hits.
BS04296.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:24 Download gff for
BS04296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pUf68-RA | 269..1914 | 10..1654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:40 Download gff for
BS04296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pUf68-RA | 398..2046 | 10..1657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:12 Download gff for
BS04296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pUf68-RH | 2458..4095 | 17..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:24 Download gff for
BS04296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pUf68-RA | 377..2025 | 10..1657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:48 Download gff for
BS04296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pUf68-RH | 2458..4095 | 17..1654 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:48 Download gff for
BS04296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1497213..1498230 | 637..1654 | 100 | <- | Minus |
3L | 1498293..1498796 | 133..636 | 100 | <- | Minus |
3L | 1499043..1499158 | 17..132 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:12 Download gff for
BS04296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1497213..1498230 | 637..1654 | 100 | <- | Minus |
arm_3L | 1498293..1498796 | 133..636 | 100 | <- | Minus |
arm_3L | 1499043..1499158 | 17..132 | 100 | | Minus |
BS04296.pep Sequence
Translation from 16 to 1653
> BS04296.pep
MEQSIKMVLMKQTLAHQQQQLATQRTQVQRQQALALMCRVYVGSISFELK
EDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMN
GALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEED
IKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFD
LGGQLLRVGRSITPPNALACPTTNSTMPTAAAVAAAAATAKIQALDAVAS
NAVLGLSQNTPVMAAGAVVTKVGAMPVVSAATSAAALHPALAQAAPALLP
PGIFQAPTPVAPSLLGVPAGLQPLQAVVPTLPPPALLATPTLPMTVGGVG
VGLVPTVATLAGAEASKGAAAAAALSAAANNAAVTAANLSENIKKAHEKQ
QEELQKKLMDEGDVQTLQQQENMSIKGQSARQLVMQRLMRPVDSRVIILR
NMVGPEDVDETLQEEIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVK
IFVEFSAGAEAMRGKEALDGRFFGGRRVVAELYDQGIFDQGDLSG*
BS04296.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pUf68-PJ | 545 | CG12085-PJ | 1..545 | 1..545 | 2716 | 100 | Plus |
pUf68-PI | 545 | CG12085-PI | 1..545 | 1..545 | 2716 | 100 | Plus |
pUf68-PH | 545 | CG12085-PH | 1..545 | 1..545 | 2716 | 100 | Plus |
pUf68-PG | 545 | CG12085-PG | 1..545 | 1..545 | 2716 | 100 | Plus |
pUf68-PF | 545 | CG12085-PF | 1..545 | 1..545 | 2716 | 100 | Plus |