Clone BS04302 Report

Search the DGRC for BS04302

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:43
Well:2
Vector:pDNR-Dual
Associated Gene/Transcriptchic-RB
Protein status:BS04302.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04302.5prime Sequence

411 bp (410 high quality bases) assembled on 2005-11-29

> BS04302.5prime
GAAGTTATCAGTCGACATGAGCTGGCAAGATTATGTGGACAACCAACTCC
TGGCCTCGCAGTGCGTGACCAAGGCGTGCATCGCCGGCCACGACGGCAAC
ATTTGGGCGCAGTCCAGTGGCTTTGAGGTGACAAAAGAGGAGCTCTCCAA
ACTGATCAGCGGCTTTGACCAGCAGGACGGTCTCACCAGCAACGGCGTGA
CACTCGCCGGCCAGCGGTACATTTACCTTTCCGGCACAGACCGCGTGGTG
CGCGCCAAGCTCGGCCGGAGCGGAGTGCACTGCATGAAGACAACACAAGC
CGTGATCGTTTCCATCTACGAGGATCCCGTTCAGCCCCAGCAGGCCGCTT
CCGTGGTAGAGAAACTTGGAGATTATCTGATTACTTGCGGGTACTAGAAG
CTTTCTAGACC

BS04302.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9553-PA 381 chic-RA 1..381 17..397 1905 100 Plus
CG9553-PC 381 chic-RC 1..381 17..397 1905 100 Plus
CG9553-PB 381 chic-RB 1..381 17..397 1905 100 Plus
CG9553-PD 381 chic-RD 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
chic-RF 1275 CG9553-RF 324..705 16..397 1910 100 Plus
chic-RE 988 CG9553-RE 354..735 16..397 1910 100 Plus
chic-RD 2091 CG9553-RD 248..629 16..397 1910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5976611..5976784 299..126 870 100 Minus
2L 23513712 2L 5979408..5979523 131..16 580 100 Minus
2L 23513712 2L 5973577..5973676 397..298 500 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:17:51 has no hits.

BS04302.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:57 Download gff for BS04302.5prime
Subject Subject Range Query Range Percent Splice Strand
chic-PD 1..381 17..397 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:14 Download gff for BS04302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9553-PD 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:44:57 Download gff for BS04302.5prime
Subject Subject Range Query Range Percent Splice Strand
chic-RD 243..632 10..400 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:36 Download gff for BS04302.5prime
Subject Subject Range Query Range Percent Splice Strand
chic-RD 243..632 10..400 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:36 Download gff for BS04302.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5973574..5973674 300..400 99 <- Minus
2L 5976611..5976782 128..299 100 <- Minus
2L 5979412..5979528 10..127 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:44:57 Download gff for BS04302.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5973574..5973674 300..400 99 <- Minus
arm_2L 5976611..5976782 128..299 100 <- Minus
arm_2L 5979412..5979528 10..127 97   Minus

BS04302.3prime Sequence

411 bp (410 high quality bases) assembled on 2005-12-01

> BS04302.3prime
ATGGTCTAGAAAGCTTCTAGTACCCGCAAGTAATCAGATAATCTCCAAGT
TTCTCTACCACGGAAGCGGCCTGCTGGGGCTGAACGGGATCCTCGTAGAT
GGAAACGATCACGGCTTGTGTTGTCTTCATGCAGTGCACTCCGCTCCGGC
CGAGCTTGGCGCGCACCACGCGGTCTGTGCCGGAAAGGTAAATGTACCGC
TGGCCGGCGAGTGTCACGCCGTTGCTGGTGAGACCGTCCTGCTGGTCAAA
GCCGCTGATCAGTTTGGAGAGCTCCTCTTTTGTCACCTCAAAGCCACTGG
ACTGCGCCCAAATGTTGCCGTCGTGGCCGGCGATGCACGCCTTGGTCACG
CACTGCGAGGCCAGGAGTTGGTTGTCCACATAATCTTGCCAGCTCATGTC
GACTGATAACT

BS04302.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9553-PA 381 chic-RA 1..381 397..17 1905 100 Minus
CG9553-PC 381 chic-RC 1..381 397..17 1905 100 Minus
CG9553-PB 381 chic-RB 1..381 397..17 1905 100 Minus
CG9553-PD 381 chic-RD 1..381 397..17 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
chic-RF 1275 CG9553-RF 324..705 398..17 1910 100 Minus
chic-RE 988 CG9553-RE 354..735 398..17 1910 100 Minus
chic-RD 2091 CG9553-RD 248..629 398..17 1910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5976611..5976784 115..288 870 100 Plus
2L 23513712 2L 5979408..5979523 283..398 580 100 Plus
2L 23513712 2L 5973577..5973676 17..116 500 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:47:33 has no hits.

BS04302.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:56 Download gff for BS04302.3prime
Subject Subject Range Query Range Percent Splice Strand
chic-PD 1..381 17..397 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:13 Download gff for BS04302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9553-PD 1..381 17..397 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:09 Download gff for BS04302.3prime
Subject Subject Range Query Range Percent Splice Strand
chic-RD 243..632 14..404 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:07 Download gff for BS04302.3prime
Subject Subject Range Query Range Percent Splice Strand
chic-RD 243..632 14..404 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:07 Download gff for BS04302.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5973574..5973674 14..114 99 <- Plus
2L 5976611..5976782 115..286 100 <- Plus
2L 5979412..5979528 287..404 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:09 Download gff for BS04302.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5973574..5973674 14..114 99 <- Plus
arm_2L 5976611..5976782 115..286 100 <- Plus
arm_2L 5979412..5979528 287..404 97   Plus

BS04302.complete Sequence

413 bp (413 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634920

> BS04302.complete
GAAGTTATCAGTCGACATGAGCTGGCAAGATTATGTGGACAACCAACTCC
TGGCCTCGCAGTGCGTGACCAAGGCGTGCATCGCCGGCCACGACGGCAAC
ATTTGGGCGCAGTCCAGTGGCTTTGAGGTGACAAAAGAGGAGCTCTCCAA
ACTGATCAGCGGCTTTGACCAGCAGGACGGTCTCACCAGCAACGGCGTGA
CACTCGCCGGCCAGCGGTACATTTACCTTTCCGGCACAGACCGCGTGGTG
CGCGCCAAGCTCGGCCGGAGCGGAGTGCACTGCATGAAGACAACACAAGC
CGTGATCGTTTCCATCTACGAGGATCCCGTTCAGCCCCAGCAGGCCGCTT
CCGTGGTAGAGAAACTTGGAGATTATCTGATTACTTGCGGGTACTAGAAG
CTTTCTAGACCAT

BS04302.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
chic-RF 381 CG9553-PF 1..381 17..397 1905 100 Plus
chic-RE 381 CG9553-PE 1..381 17..397 1905 100 Plus
chic-RD 381 CG9553-PD 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
chic-RF 1275 CG9553-RF 324..705 16..397 1910 100 Plus
chic-RE 988 CG9553-RE 354..735 16..397 1910 100 Plus
chic-RD 2091 CG9553-RD 248..629 16..397 1910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5976611..5976784 299..126 870 100 Minus
2L 23513712 2L 5979408..5979523 131..16 580 100 Minus
2L 23513712 2L 5973577..5973676 397..298 500 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:57:07 has no hits.

BS04302.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:25 Download gff for BS04302.complete
Subject Subject Range Query Range Percent Splice Strand
chic-RB 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:53 Download gff for BS04302.complete
Subject Subject Range Query Range Percent Splice Strand
chic-RB 336..725 10..400 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:43 Download gff for BS04302.complete
Subject Subject Range Query Range Percent Splice Strand
chic-RD 249..629 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:25 Download gff for BS04302.complete
Subject Subject Range Query Range Percent Splice Strand
chic-RB 336..725 10..400 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:52 Download gff for BS04302.complete
Subject Subject Range Query Range Percent Splice Strand
chic-RD 249..629 17..397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:52 Download gff for BS04302.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5973577..5973674 300..397 100 <- Minus
2L 5976611..5976782 128..299 100 <- Minus
2L 5979412..5979522 17..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:43 Download gff for BS04302.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5973577..5973674 300..397 100 <- Minus
arm_2L 5976611..5976782 128..299 100 <- Minus
arm_2L 5979412..5979522 17..127 100   Minus

BS04302.pep Sequence

Translation from 16 to 396

> BS04302.pep
MSWQDYVDNQLLASQCVTKACIAGHDGNIWAQSSGFEVTKEELSKLISGF
DQQDGLTSNGVTLAGQRYIYLSGTDRVVRAKLGRSGVHCMKTTQAVIVSI
YEDPVQPQQAASVVEKLGDYLITCGY*

BS04302.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
chic-PF 126 CG9553-PF 1..126 1..126 656 100 Plus
chic-PE 126 CG9553-PE 1..126 1..126 656 100 Plus
chic-PD 126 CG9553-PD 1..126 1..126 656 100 Plus
chic-PB 126 CG9553-PB 1..126 1..126 656 100 Plus
chic-PC 126 CG9553-PC 1..126 1..126 656 100 Plus