Clone Sequence Records
BS04302.5prime Sequence
411 bp (410 high quality bases) assembled on 2005-11-29
> BS04302.5prime
GAAGTTATCAGTCGACATGAGCTGGCAAGATTATGTGGACAACCAACTCC
TGGCCTCGCAGTGCGTGACCAAGGCGTGCATCGCCGGCCACGACGGCAAC
ATTTGGGCGCAGTCCAGTGGCTTTGAGGTGACAAAAGAGGAGCTCTCCAA
ACTGATCAGCGGCTTTGACCAGCAGGACGGTCTCACCAGCAACGGCGTGA
CACTCGCCGGCCAGCGGTACATTTACCTTTCCGGCACAGACCGCGTGGTG
CGCGCCAAGCTCGGCCGGAGCGGAGTGCACTGCATGAAGACAACACAAGC
CGTGATCGTTTCCATCTACGAGGATCCCGTTCAGCCCCAGCAGGCCGCTT
CCGTGGTAGAGAAACTTGGAGATTATCTGATTACTTGCGGGTACTAGAAG
CTTTCTAGACC
BS04302.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9553-PA | 381 | chic-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
CG9553-PC | 381 | chic-RC | 1..381 | 17..397 | 1905 | 100 | Plus |
CG9553-PB | 381 | chic-RB | 1..381 | 17..397 | 1905 | 100 | Plus |
CG9553-PD | 381 | chic-RD | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chic-RF | 1275 | CG9553-RF | 324..705 | 16..397 | 1910 | 100 | Plus |
chic-RE | 988 | CG9553-RE | 354..735 | 16..397 | 1910 | 100 | Plus |
chic-RD | 2091 | CG9553-RD | 248..629 | 16..397 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5976611..5976784 | 299..126 | 870 | 100 | Minus |
2L | 23513712 | 2L | 5979408..5979523 | 131..16 | 580 | 100 | Minus |
2L | 23513712 | 2L | 5973577..5973676 | 397..298 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:17:51 has no hits.
BS04302.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:57 Download gff for
BS04302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chic-PD | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:14 Download gff for
BS04302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9553-PD | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:44:57 Download gff for
BS04302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chic-RD | 243..632 | 10..400 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:36 Download gff for
BS04302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chic-RD | 243..632 | 10..400 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:36 Download gff for
BS04302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5973574..5973674 | 300..400 | 99 | <- | Minus |
2L | 5976611..5976782 | 128..299 | 100 | <- | Minus |
2L | 5979412..5979528 | 10..127 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:44:57 Download gff for
BS04302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5973574..5973674 | 300..400 | 99 | <- | Minus |
arm_2L | 5976611..5976782 | 128..299 | 100 | <- | Minus |
arm_2L | 5979412..5979528 | 10..127 | 97 | | Minus |
BS04302.3prime Sequence
411 bp (410 high quality bases) assembled on 2005-12-01
> BS04302.3prime
ATGGTCTAGAAAGCTTCTAGTACCCGCAAGTAATCAGATAATCTCCAAGT
TTCTCTACCACGGAAGCGGCCTGCTGGGGCTGAACGGGATCCTCGTAGAT
GGAAACGATCACGGCTTGTGTTGTCTTCATGCAGTGCACTCCGCTCCGGC
CGAGCTTGGCGCGCACCACGCGGTCTGTGCCGGAAAGGTAAATGTACCGC
TGGCCGGCGAGTGTCACGCCGTTGCTGGTGAGACCGTCCTGCTGGTCAAA
GCCGCTGATCAGTTTGGAGAGCTCCTCTTTTGTCACCTCAAAGCCACTGG
ACTGCGCCCAAATGTTGCCGTCGTGGCCGGCGATGCACGCCTTGGTCACG
CACTGCGAGGCCAGGAGTTGGTTGTCCACATAATCTTGCCAGCTCATGTC
GACTGATAACT
BS04302.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9553-PA | 381 | chic-RA | 1..381 | 397..17 | 1905 | 100 | Minus |
CG9553-PC | 381 | chic-RC | 1..381 | 397..17 | 1905 | 100 | Minus |
CG9553-PB | 381 | chic-RB | 1..381 | 397..17 | 1905 | 100 | Minus |
CG9553-PD | 381 | chic-RD | 1..381 | 397..17 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chic-RF | 1275 | CG9553-RF | 324..705 | 398..17 | 1910 | 100 | Minus |
chic-RE | 988 | CG9553-RE | 354..735 | 398..17 | 1910 | 100 | Minus |
chic-RD | 2091 | CG9553-RD | 248..629 | 398..17 | 1910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5976611..5976784 | 115..288 | 870 | 100 | Plus |
2L | 23513712 | 2L | 5979408..5979523 | 283..398 | 580 | 100 | Plus |
2L | 23513712 | 2L | 5973577..5973676 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:47:33 has no hits.
BS04302.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:56 Download gff for
BS04302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chic-PD | 1..381 | 17..397 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:13 Download gff for
BS04302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9553-PD | 1..381 | 17..397 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:09 Download gff for
BS04302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chic-RD | 243..632 | 14..404 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:07 Download gff for
BS04302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chic-RD | 243..632 | 14..404 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:07 Download gff for
BS04302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5973574..5973674 | 14..114 | 99 | <- | Plus |
2L | 5976611..5976782 | 115..286 | 100 | <- | Plus |
2L | 5979412..5979528 | 287..404 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:09 Download gff for
BS04302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5973574..5973674 | 14..114 | 99 | <- | Plus |
arm_2L | 5976611..5976782 | 115..286 | 100 | <- | Plus |
arm_2L | 5979412..5979528 | 287..404 | 97 | | Plus |
BS04302.complete Sequence
413 bp (413 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634920
> BS04302.complete
GAAGTTATCAGTCGACATGAGCTGGCAAGATTATGTGGACAACCAACTCC
TGGCCTCGCAGTGCGTGACCAAGGCGTGCATCGCCGGCCACGACGGCAAC
ATTTGGGCGCAGTCCAGTGGCTTTGAGGTGACAAAAGAGGAGCTCTCCAA
ACTGATCAGCGGCTTTGACCAGCAGGACGGTCTCACCAGCAACGGCGTGA
CACTCGCCGGCCAGCGGTACATTTACCTTTCCGGCACAGACCGCGTGGTG
CGCGCCAAGCTCGGCCGGAGCGGAGTGCACTGCATGAAGACAACACAAGC
CGTGATCGTTTCCATCTACGAGGATCCCGTTCAGCCCCAGCAGGCCGCTT
CCGTGGTAGAGAAACTTGGAGATTATCTGATTACTTGCGGGTACTAGAAG
CTTTCTAGACCAT
BS04302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chic-RF | 381 | CG9553-PF | 1..381 | 17..397 | 1905 | 100 | Plus |
chic-RE | 381 | CG9553-PE | 1..381 | 17..397 | 1905 | 100 | Plus |
chic-RD | 381 | CG9553-PD | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:57:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chic-RF | 1275 | CG9553-RF | 324..705 | 16..397 | 1910 | 100 | Plus |
chic-RE | 988 | CG9553-RE | 354..735 | 16..397 | 1910 | 100 | Plus |
chic-RD | 2091 | CG9553-RD | 248..629 | 16..397 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5976611..5976784 | 299..126 | 870 | 100 | Minus |
2L | 23513712 | 2L | 5979408..5979523 | 131..16 | 580 | 100 | Minus |
2L | 23513712 | 2L | 5973577..5973676 | 397..298 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:57:07 has no hits.
BS04302.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:25 Download gff for
BS04302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chic-RB | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:53 Download gff for
BS04302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chic-RB | 336..725 | 10..400 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:43 Download gff for
BS04302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chic-RD | 249..629 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:25 Download gff for
BS04302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chic-RB | 336..725 | 10..400 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:52 Download gff for
BS04302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chic-RD | 249..629 | 17..397 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:52 Download gff for
BS04302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5973577..5973674 | 300..397 | 100 | <- | Minus |
2L | 5976611..5976782 | 128..299 | 100 | <- | Minus |
2L | 5979412..5979522 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:43 Download gff for
BS04302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5973577..5973674 | 300..397 | 100 | <- | Minus |
arm_2L | 5976611..5976782 | 128..299 | 100 | <- | Minus |
arm_2L | 5979412..5979522 | 17..127 | 100 | | Minus |
BS04302.pep Sequence
Translation from 16 to 396
> BS04302.pep
MSWQDYVDNQLLASQCVTKACIAGHDGNIWAQSSGFEVTKEELSKLISGF
DQQDGLTSNGVTLAGQRYIYLSGTDRVVRAKLGRSGVHCMKTTQAVIVSI
YEDPVQPQQAASVVEKLGDYLITCGY*
BS04302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chic-PF | 126 | CG9553-PF | 1..126 | 1..126 | 656 | 100 | Plus |
chic-PE | 126 | CG9553-PE | 1..126 | 1..126 | 656 | 100 | Plus |
chic-PD | 126 | CG9553-PD | 1..126 | 1..126 | 656 | 100 | Plus |
chic-PB | 126 | CG9553-PB | 1..126 | 1..126 | 656 | 100 | Plus |
chic-PC | 126 | CG9553-PC | 1..126 | 1..126 | 656 | 100 | Plus |