Clone BS04303 Report

Search the DGRC for BS04303

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:43
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG6985-RA
Protein status:BS04303.pep: full length peptide match
Sequenced Size:1538

Clone Sequence Records

BS04303.complete Sequence

1538 bp assembled on 2009-12-07

GenBank Submission: KX799536

> BS04303.complete
GAAGTTATCAGTCGACATGCGCCGCGCTGCAAAGCGAGAGAGCGAAGCGG
CGCCTCCCAAAGAGGAACCACAGTCACCCTGCTCCTGGCCCAAAAACAAT
CTACCCAGCGAATGGGGCACCTCAGGGGGCACCCAAAGCCTGGGACCTCG
AGAATTCAGGGCGGGCGAGAATCCCCTCAAAGATAGCCGCATCTTCCATG
TGCTCTGGCGTAATCAGACCACCAAAAAGCACAAAACGTGGACTGGCAAC
GGAACGCTGGTGGTCACGGGATCCATAGTAACATTGAAGGATGACACCGG
CAAGGTTGTGGACACCATGACATACTTTAAGCAGCGGCAACTTCAGGAGA
ACGATCAGCTGGAAGTAGGCAGCAAGGATGTCGAGATTCAGGAGGAGATT
AAAACCGTCGAGGAGTGCCTTATTCAGCGCCAGTTGGAAATAGCCAACTG
GTGCCAAAAAATAGATGCCCAGAATGGTTGTACAGACACATCGCCACCAC
CTGCTGACAGTGCACCCGTTAGGTCTCATCTGCTCAAGAAGATCAAGCGC
GAGGCAGATGCCTTTGCTCCACCGCATTTGGAAATTAGCCAACATAGAGA
AGATAAACATGTCTCCTATGCAGCCGCCGATTCCAGCACTTCGATGGGAA
AGAAAATCTATGAACAAAACACTTTGAAGATAGAAAACCCTACCAAGGAG
TTCACCCAATCGGAATATCTGTGTCTATTAACTCCAGCTGAACTGCAGAA
AAAAATATTACTCTTTGTTTCTGAATATGCACAAACATCTAAAACAGAAT
CGTCTACGTTGAAGGAAATCTTCCAAATTGTATGTGATCATCCTGTGCTC
CTAAAAACTTTGGGTACGAATCCAGTGTTTAAGGAAATAATGGAGGTACT
GGACGCCATACTGCCGCCTTGGCCAAGCATGGGACTTTACGACTCCGCCA
AGTTCGAGTTTCTACACGTAATGCTGGATCACTTAGTGGCGGAGCGAGGC
GAGAAGTGCTGCATCTTGGCAAACAGTGAGGATTGCCTCACCCTGGTCAG
GGGATACTGTCAGAGTTATAGTTTGGACCATGCGCAGCTAGATGGTCCCC
AAAAAGTGAACTTATTTAATTCTCTTGCCGATGGAGAACCAATGATTGGC
TTGATTTTGACCAGTGACTTGTCGGCGCTTCGAGCTCTTCGCTGCAAACA
CCTAATTATTTATAATCACAATTCCAGGCAGCAAGCCAACCAACTGCTGG
CCGTTGGAGCAATGGATACCAAAATATATACTCTCATCACAGCCGGAGGT
TCTCCGGAGGAGTTGCAGTTCTATGGGCATATGGGTGATGATTCTATAGA
AGATCTTCAGAATTGCCGCAGCCAGCTTATACCGACCGCATCTAATAATC
TAGCGGACTGGACCAAAAGTGAGCCACCTTTTGACCGTGTTTTCTTTGAG
GAAACTGCTATATCGGATAGTCTGGATTGTATTCAACTGGTTTATTCAAG
AAAAGTGAGAGTAAAAACTTAAAAGCTTTCTAGACCAT

BS04303.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6985-RA 1506 CG6985-PA 1..1506 17..1522 7530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6985-RA 1757 CG6985-RA 167..1674 16..1523 7540 100 Plus
vret-RA 2328 CG4771-RA 2284..2328 1523..1479 225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22741316..22742097 16..797 3910 100 Plus
3R 32079331 3R 22742155..22742754 797..1396 3000 100 Plus
3R 32079331 3R 22742924..22742998 1449..1523 375 100 Plus
3R 32079331 3R 22742814..22742868 1397..1451 275 100 Plus
Blast to na_te.dros performed 2014-11-28 02:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 1451..1525 346..417 115 65.3 Plus

BS04303.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:29 Download gff for BS04303.complete
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 88..1591 17..1520 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:36 Download gff for BS04303.complete
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 168..1671 17..1520 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:44 Download gff for BS04303.complete
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 88..1591 17..1520 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:20 Download gff for BS04303.complete
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 168..1671 17..1520 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:20 Download gff for BS04303.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22741317..22742096 17..796 100 -> Plus
3R 22742155..22742754 797..1396 100 -> Plus
3R 22742814..22742867 1397..1450 100 -> Plus
3R 22742926..22742995 1451..1520 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:36 Download gff for BS04303.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18568648..18568717 1451..1520 100   Plus
arm_3R 18567039..18567818 17..796 100 -> Plus
arm_3R 18567877..18568476 797..1396 100 -> Plus
arm_3R 18568536..18568589 1397..1450 100 -> Plus

BS04303.3prime Sequence

875 bp (806 high quality bases) assembled on 2005-12-01

> BS04303.3prime
ATGGTCTAGAAAGCTTTTAAGTTTTTACTCTCACTTTTCTTGAATAAACC
AGTTGAATACAATCCAGACTATCCGATATAGCAGTTTCCTCAAAGAAAAC
ACGGTCAAAAGGTGGCTCACTTTTGGTCCAGTCCGCTAGATTATTAGATG
CGGTCGGTATAAGCTGGCTGCGGCAATTCTGAAGATCTTCTATAGAATCA
TCACCCATATGCCCATAGAACTGCAACTCCTCCGGAGAACCTCCGGCTGT
GATGAGAGTATATATTTTGGTATCCATTGCTCCAACGGCCAGCAGTTGGT
TGGCTTGCTGCCTGGAATTGTGATTATAAATAATTAGGTGTTTGCAGCGA
AGAGCTCGAAGCGCCGACAAGTCACTGGTCAAAATCAAGCCAATCATTGG
TTCTCCATCGGCAAGAGAATTAAATAAGTTCACTTTTTGGGGACCATCTA
GCTGCGCATGGTCCAAACTATAACTCTGACAGTATCCCCTGACCAGGGTG
AGGCAATCCTCACTGTTTGCCAAGATGCAGCACTTCTCGCCTCGCTCCGC
CACTAAGTGATCCAGCATTACGTGTAGAAACTCGAACTTGGCGGAGTCGT
AAAGTCCCATGCTTGGCCAAGGCGGCAGTATGGCGTCCAGTACCTCCATT
ATTTCCTTAAACACTGGATTCGTACCCAAAGTTTTTAGGAGCACAGGATG
ATCACATACAATTTGGAAGATTTCCTTCAACGTAGACGATTCTGTTTTAG
ATGTTTGTGCATATTCAGAAACAAAGAGTAATATTTTTTTTCTGCAGTTC
AGCTGGAGTTAATAGACACAGATATTCCGATTGGGTGAACTCCTTGGTAG
GGTTTTCTATCTTCAAAGTGTTTTG

BS04303.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6985-PA 1506 CG6985-RA 733..1506 790..17 3870 100 Minus
CG6985-PA 1506 CG6985-RA 649..739 875..785 455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6985-RA 1757 CG6985-RA 816..1674 875..16 4275 99.9 Minus
vret-RA 2328 CG4771-RA 2284..2328 16..60 225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22742155..22742754 742..143 3000 100 Minus
3R 32079331 3R 22741965..22742097 875..742 620 99.3 Minus
3R 32079331 3R 22742924..22742998 90..16 375 100 Minus
3R 32079331 3R 22742814..22742868 142..88 275 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:33:27 has no hits.

BS04303.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:59 Download gff for BS04303.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6985-PA 649..1506 17..875 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:16 Download gff for BS04303.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6985-PA 649..1506 17..875 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:01:58 Download gff for BS04303.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 816..1674 16..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:43:54 Download gff for BS04303.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 816..1674 16..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:43:54 Download gff for BS04303.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22741965..22742096 743..875 99 -> Minus
3R 22742155..22742754 143..742 100 -> Minus
3R 22742814..22742867 89..142 100 -> Minus
3R 22742926..22742998 16..88 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:01:58 Download gff for BS04303.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18567687..18567818 743..875 99 -> Minus
arm_3R 18567877..18568476 143..742 100 -> Minus
arm_3R 18568536..18568589 89..142 100 -> Minus
arm_3R 18568648..18568720 16..88 100   Minus

BS04303.5prime Sequence

809 bp (743 high quality bases) assembled on 2005-12-01

> BS04303.5prime
GAAGTTATCAGTCGACATGCGCCGCGCTGCAAAGCGAGAGAGCGAAGCGG
CGCCTCCCAAAGAGGAACCACAGTCACCCTGCTCCTGGCCCAAAAACAAT
CTACCCAGCGAATGGGGCACCTCAGGGGGCACCCAAAGCCTGGGACCTCG
AGAATTCAGGGCGGGCGAGAATCCCCTCAAAGATAGCCGCATCTTCCATG
TGCTCTGGCGTAATCAGACCACCAAAAAGCACAAAACGTGGACTGGCAAC
GGAACGCTGGTGGTCACGGGATCCATAGTAACATTGAAGGATGACACCGG
CAAGGTTGTGGACACCATGACATACTTTAAGCAGCGGCAACTTCAGGAGA
ACGATCAGCTGGAAGTAGGCAGCAAGGATGTCGAGATTCAGGAGGAGATT
AAAACCGTCGAGGAGTGCCTTATTCAGCGCCAGTTGGAAATAGCCAACTG
GTGCCAAAAAATAGATGCCCAGAATGGTTGTACAGACACATCGCCACCAC
CTGCTGACAGTGCACCCGTTAGGTCTCATCTGCTCAAGAAGATCAAGCGC
GAGGCAGATGCCTTTGCTCCACCGCATTTGGAAATTAGCCAACATAGAGA
AGATAAACATGTCTCCTATGCAGCCGCCGATTCCAGCACTTCGATGGGAA
AGAAAATCTATGAACAAAACACTTTGAAGATAGAAAACCCTACCAAGGAG
TTCACCCAATCGGAATATCTGTGTCTATTAACTCCAGCTGAACTGCAGAA
AAAAATATTACTCTTTGTTTCTGAATATGCACAAACATCTAAAACAGAAT
CGTCTACGT

BS04303.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6985-PA 1506 CG6985-RA 1..793 17..809 3965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6985-RA 1757 CG6985-RA 167..960 16..809 3970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22741316..22742097 16..797 3910 100 Plus
Blast to na_te.dros performed 2015-02-12 05:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 1451..1525 346..417 115 65.3 Plus

BS04303.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:00 Download gff for BS04303.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6985-PA 1..793 17..809 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:17 Download gff for BS04303.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6985-PA 1..793 17..809 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:31:45 Download gff for BS04303.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 161..960 8..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:27 Download gff for BS04303.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 161..960 8..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:27 Download gff for BS04303.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22741310..22742096 8..796 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:31:45 Download gff for BS04303.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18567032..18567818 8..796 99 -> Plus

BS04303.pep Sequence

Translation from 16 to 1521

> BS04303.pep
MRRAAKRESEAAPPKEEPQSPCSWPKNNLPSEWGTSGGTQSLGPREFRAG
ENPLKDSRIFHVLWRNQTTKKHKTWTGNGTLVVTGSIVTLKDDTGKVVDT
MTYFKQRQLQENDQLEVGSKDVEIQEEIKTVEECLIQRQLEIANWCQKID
AQNGCTDTSPPPADSAPVRSHLLKKIKREADAFAPPHLEISQHREDKHVS
YAAADSSTSMGKKIYEQNTLKIENPTKEFTQSEYLCLLTPAELQKKILLF
VSEYAQTSKTESSTLKEIFQIVCDHPVLLKTLGTNPVFKEIMEVLDAILP
PWPSMGLYDSAKFEFLHVMLDHLVAERGEKCCILANSEDCLTLVRGYCQS
YSLDHAQLDGPQKVNLFNSLADGEPMIGLILTSDLSALRALRCKHLIIYN
HNSRQQANQLLAVGAMDTKIYTLITAGGSPEELQFYGHMGDDSIEDLQNC
RSQLIPTASNNLADWTKSEPPFDRVFFEETAISDSLDCIQLVYSRKVRVK
T*

BS04303.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6985-PA 501 CG6985-PA 1..501 1..501 2629 100 Plus