Clone Sequence Records
BS04303.complete Sequence
1538 bp assembled on 2009-12-07
GenBank Submission: KX799536
> BS04303.complete
GAAGTTATCAGTCGACATGCGCCGCGCTGCAAAGCGAGAGAGCGAAGCGG
CGCCTCCCAAAGAGGAACCACAGTCACCCTGCTCCTGGCCCAAAAACAAT
CTACCCAGCGAATGGGGCACCTCAGGGGGCACCCAAAGCCTGGGACCTCG
AGAATTCAGGGCGGGCGAGAATCCCCTCAAAGATAGCCGCATCTTCCATG
TGCTCTGGCGTAATCAGACCACCAAAAAGCACAAAACGTGGACTGGCAAC
GGAACGCTGGTGGTCACGGGATCCATAGTAACATTGAAGGATGACACCGG
CAAGGTTGTGGACACCATGACATACTTTAAGCAGCGGCAACTTCAGGAGA
ACGATCAGCTGGAAGTAGGCAGCAAGGATGTCGAGATTCAGGAGGAGATT
AAAACCGTCGAGGAGTGCCTTATTCAGCGCCAGTTGGAAATAGCCAACTG
GTGCCAAAAAATAGATGCCCAGAATGGTTGTACAGACACATCGCCACCAC
CTGCTGACAGTGCACCCGTTAGGTCTCATCTGCTCAAGAAGATCAAGCGC
GAGGCAGATGCCTTTGCTCCACCGCATTTGGAAATTAGCCAACATAGAGA
AGATAAACATGTCTCCTATGCAGCCGCCGATTCCAGCACTTCGATGGGAA
AGAAAATCTATGAACAAAACACTTTGAAGATAGAAAACCCTACCAAGGAG
TTCACCCAATCGGAATATCTGTGTCTATTAACTCCAGCTGAACTGCAGAA
AAAAATATTACTCTTTGTTTCTGAATATGCACAAACATCTAAAACAGAAT
CGTCTACGTTGAAGGAAATCTTCCAAATTGTATGTGATCATCCTGTGCTC
CTAAAAACTTTGGGTACGAATCCAGTGTTTAAGGAAATAATGGAGGTACT
GGACGCCATACTGCCGCCTTGGCCAAGCATGGGACTTTACGACTCCGCCA
AGTTCGAGTTTCTACACGTAATGCTGGATCACTTAGTGGCGGAGCGAGGC
GAGAAGTGCTGCATCTTGGCAAACAGTGAGGATTGCCTCACCCTGGTCAG
GGGATACTGTCAGAGTTATAGTTTGGACCATGCGCAGCTAGATGGTCCCC
AAAAAGTGAACTTATTTAATTCTCTTGCCGATGGAGAACCAATGATTGGC
TTGATTTTGACCAGTGACTTGTCGGCGCTTCGAGCTCTTCGCTGCAAACA
CCTAATTATTTATAATCACAATTCCAGGCAGCAAGCCAACCAACTGCTGG
CCGTTGGAGCAATGGATACCAAAATATATACTCTCATCACAGCCGGAGGT
TCTCCGGAGGAGTTGCAGTTCTATGGGCATATGGGTGATGATTCTATAGA
AGATCTTCAGAATTGCCGCAGCCAGCTTATACCGACCGCATCTAATAATC
TAGCGGACTGGACCAAAAGTGAGCCACCTTTTGACCGTGTTTTCTTTGAG
GAAACTGCTATATCGGATAGTCTGGATTGTATTCAACTGGTTTATTCAAG
AAAAGTGAGAGTAAAAACTTAAAAGCTTTCTAGACCAT
BS04303.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6985-RA | 1506 | CG6985-PA | 1..1506 | 17..1522 | 7530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6985-RA | 1757 | CG6985-RA | 167..1674 | 16..1523 | 7540 | 100 | Plus |
vret-RA | 2328 | CG4771-RA | 2284..2328 | 1523..1479 | 225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22741316..22742097 | 16..797 | 3910 | 100 | Plus |
3R | 32079331 | 3R | 22742155..22742754 | 797..1396 | 3000 | 100 | Plus |
3R | 32079331 | 3R | 22742924..22742998 | 1449..1523 | 375 | 100 | Plus |
3R | 32079331 | 3R | 22742814..22742868 | 1397..1451 | 275 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1451..1525 | 346..417 | 115 | 65.3 | Plus |
BS04303.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:29 Download gff for
BS04303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6985-RA | 88..1591 | 17..1520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:36 Download gff for
BS04303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6985-RA | 168..1671 | 17..1520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:44 Download gff for
BS04303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6985-RA | 88..1591 | 17..1520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:20 Download gff for
BS04303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6985-RA | 168..1671 | 17..1520 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:20 Download gff for
BS04303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22741317..22742096 | 17..796 | 100 | -> | Plus |
3R | 22742155..22742754 | 797..1396 | 100 | -> | Plus |
3R | 22742814..22742867 | 1397..1450 | 100 | -> | Plus |
3R | 22742926..22742995 | 1451..1520 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:36 Download gff for
BS04303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18568648..18568717 | 1451..1520 | 100 | | Plus |
arm_3R | 18567039..18567818 | 17..796 | 100 | -> | Plus |
arm_3R | 18567877..18568476 | 797..1396 | 100 | -> | Plus |
arm_3R | 18568536..18568589 | 1397..1450 | 100 | -> | Plus |
BS04303.3prime Sequence
875 bp (806 high quality bases) assembled on 2005-12-01
> BS04303.3prime
ATGGTCTAGAAAGCTTTTAAGTTTTTACTCTCACTTTTCTTGAATAAACC
AGTTGAATACAATCCAGACTATCCGATATAGCAGTTTCCTCAAAGAAAAC
ACGGTCAAAAGGTGGCTCACTTTTGGTCCAGTCCGCTAGATTATTAGATG
CGGTCGGTATAAGCTGGCTGCGGCAATTCTGAAGATCTTCTATAGAATCA
TCACCCATATGCCCATAGAACTGCAACTCCTCCGGAGAACCTCCGGCTGT
GATGAGAGTATATATTTTGGTATCCATTGCTCCAACGGCCAGCAGTTGGT
TGGCTTGCTGCCTGGAATTGTGATTATAAATAATTAGGTGTTTGCAGCGA
AGAGCTCGAAGCGCCGACAAGTCACTGGTCAAAATCAAGCCAATCATTGG
TTCTCCATCGGCAAGAGAATTAAATAAGTTCACTTTTTGGGGACCATCTA
GCTGCGCATGGTCCAAACTATAACTCTGACAGTATCCCCTGACCAGGGTG
AGGCAATCCTCACTGTTTGCCAAGATGCAGCACTTCTCGCCTCGCTCCGC
CACTAAGTGATCCAGCATTACGTGTAGAAACTCGAACTTGGCGGAGTCGT
AAAGTCCCATGCTTGGCCAAGGCGGCAGTATGGCGTCCAGTACCTCCATT
ATTTCCTTAAACACTGGATTCGTACCCAAAGTTTTTAGGAGCACAGGATG
ATCACATACAATTTGGAAGATTTCCTTCAACGTAGACGATTCTGTTTTAG
ATGTTTGTGCATATTCAGAAACAAAGAGTAATATTTTTTTTCTGCAGTTC
AGCTGGAGTTAATAGACACAGATATTCCGATTGGGTGAACTCCTTGGTAG
GGTTTTCTATCTTCAAAGTGTTTTG
BS04303.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6985-PA | 1506 | CG6985-RA | 733..1506 | 790..17 | 3870 | 100 | Minus |
CG6985-PA | 1506 | CG6985-RA | 649..739 | 875..785 | 455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6985-RA | 1757 | CG6985-RA | 816..1674 | 875..16 | 4275 | 99.9 | Minus |
vret-RA | 2328 | CG4771-RA | 2284..2328 | 16..60 | 225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22742155..22742754 | 742..143 | 3000 | 100 | Minus |
3R | 32079331 | 3R | 22741965..22742097 | 875..742 | 620 | 99.3 | Minus |
3R | 32079331 | 3R | 22742924..22742998 | 90..16 | 375 | 100 | Minus |
3R | 32079331 | 3R | 22742814..22742868 | 142..88 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:33:27 has no hits.
BS04303.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:44:59 Download gff for
BS04303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6985-PA | 649..1506 | 17..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:16 Download gff for
BS04303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6985-PA | 649..1506 | 17..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:01:58 Download gff for
BS04303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6985-RA | 816..1674 | 16..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:43:54 Download gff for
BS04303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6985-RA | 816..1674 | 16..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:43:54 Download gff for
BS04303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22741965..22742096 | 743..875 | 99 | -> | Minus |
3R | 22742155..22742754 | 143..742 | 100 | -> | Minus |
3R | 22742814..22742867 | 89..142 | 100 | -> | Minus |
3R | 22742926..22742998 | 16..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:01:58 Download gff for
BS04303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18567687..18567818 | 743..875 | 99 | -> | Minus |
arm_3R | 18567877..18568476 | 143..742 | 100 | -> | Minus |
arm_3R | 18568536..18568589 | 89..142 | 100 | -> | Minus |
arm_3R | 18568648..18568720 | 16..88 | 100 | | Minus |
BS04303.5prime Sequence
809 bp (743 high quality bases) assembled on 2005-12-01
> BS04303.5prime
GAAGTTATCAGTCGACATGCGCCGCGCTGCAAAGCGAGAGAGCGAAGCGG
CGCCTCCCAAAGAGGAACCACAGTCACCCTGCTCCTGGCCCAAAAACAAT
CTACCCAGCGAATGGGGCACCTCAGGGGGCACCCAAAGCCTGGGACCTCG
AGAATTCAGGGCGGGCGAGAATCCCCTCAAAGATAGCCGCATCTTCCATG
TGCTCTGGCGTAATCAGACCACCAAAAAGCACAAAACGTGGACTGGCAAC
GGAACGCTGGTGGTCACGGGATCCATAGTAACATTGAAGGATGACACCGG
CAAGGTTGTGGACACCATGACATACTTTAAGCAGCGGCAACTTCAGGAGA
ACGATCAGCTGGAAGTAGGCAGCAAGGATGTCGAGATTCAGGAGGAGATT
AAAACCGTCGAGGAGTGCCTTATTCAGCGCCAGTTGGAAATAGCCAACTG
GTGCCAAAAAATAGATGCCCAGAATGGTTGTACAGACACATCGCCACCAC
CTGCTGACAGTGCACCCGTTAGGTCTCATCTGCTCAAGAAGATCAAGCGC
GAGGCAGATGCCTTTGCTCCACCGCATTTGGAAATTAGCCAACATAGAGA
AGATAAACATGTCTCCTATGCAGCCGCCGATTCCAGCACTTCGATGGGAA
AGAAAATCTATGAACAAAACACTTTGAAGATAGAAAACCCTACCAAGGAG
TTCACCCAATCGGAATATCTGTGTCTATTAACTCCAGCTGAACTGCAGAA
AAAAATATTACTCTTTGTTTCTGAATATGCACAAACATCTAAAACAGAAT
CGTCTACGT
BS04303.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6985-PA | 1506 | CG6985-RA | 1..793 | 17..809 | 3965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6985-RA | 1757 | CG6985-RA | 167..960 | 16..809 | 3970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:22:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22741316..22742097 | 16..797 | 3910 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 05:22:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1451..1525 | 346..417 | 115 | 65.3 | Plus |
BS04303.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:00 Download gff for
BS04303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6985-PA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:17 Download gff for
BS04303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6985-PA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:31:45 Download gff for
BS04303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6985-RA | 161..960 | 8..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:27 Download gff for
BS04303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6985-RA | 161..960 | 8..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:27 Download gff for
BS04303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22741310..22742096 | 8..796 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:31:45 Download gff for
BS04303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18567032..18567818 | 8..796 | 99 | -> | Plus |
BS04303.pep Sequence
Translation from 16 to 1521
> BS04303.pep
MRRAAKRESEAAPPKEEPQSPCSWPKNNLPSEWGTSGGTQSLGPREFRAG
ENPLKDSRIFHVLWRNQTTKKHKTWTGNGTLVVTGSIVTLKDDTGKVVDT
MTYFKQRQLQENDQLEVGSKDVEIQEEIKTVEECLIQRQLEIANWCQKID
AQNGCTDTSPPPADSAPVRSHLLKKIKREADAFAPPHLEISQHREDKHVS
YAAADSSTSMGKKIYEQNTLKIENPTKEFTQSEYLCLLTPAELQKKILLF
VSEYAQTSKTESSTLKEIFQIVCDHPVLLKTLGTNPVFKEIMEVLDAILP
PWPSMGLYDSAKFEFLHVMLDHLVAERGEKCCILANSEDCLTLVRGYCQS
YSLDHAQLDGPQKVNLFNSLADGEPMIGLILTSDLSALRALRCKHLIIYN
HNSRQQANQLLAVGAMDTKIYTLITAGGSPEELQFYGHMGDDSIEDLQNC
RSQLIPTASNNLADWTKSEPPFDRVFFEETAISDSLDCIQLVYSRKVRVK
T*
BS04303.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6985-PA | 501 | CG6985-PA | 1..501 | 1..501 | 2629 | 100 | Plus |